Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Ah.02g113740 Vesicle transport v-SNARE 11 (AtVTI11) (Protein SHOOT GRAVITROPISM 4) (Vesicle soluble NSF attachment protein receptor VTI1a) (AtVTI1a) (Vesicle transport v-SNARE protein VTI1a) AmaHy_arrow1_Scaffold_2 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG7G8420 LG-7 - View
Acer truncatum Atru.chr11.1721 chr11 + View
Acer truncatum Atru.chr9.337 chr9 - View
Actinidia chinensis Actinidia06103 Lachesis_group11 - View
Actinidia chinensis Actinidia33228 Lachesis_group12 + View
Actinidia chinensis Actinidia04869 Lachesis_group1 - View
Arabidopsis lyrata AL5G19000 scaffold_5 - View
Avicennia marina MSTRG.23002 ScioBoG_3703_HRSCAF_3719 + View
Aquilegia oxysepala Aqoxy3G03487 CHR03 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.HT9PNM K08493 - vesicle transport through interaction with t-SNAREs 1 (VTI1) arahy.Tifrunner.gnm1.Arahy.08 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.WIHA4V PTHR21230:SF33 - VESICLE TRANSPORT V-SNARE 12 arahy.Tifrunner.gnm1.Arahy.20 - View
Arabidopsis thaliana AT5G39510 Vesicle transport v-SNARE family protein Encodes a member of SNARE gene family. Homologous with yeast VTI1 and is involved in vesicle transport. Mutant alleles such as sgr4/zig are defective in the shoots response to gravity resulting in a zigzag growth pattern of the stem. Involved in protein trafficking to lytic vacuoles. Can conditionally substitute VTI12 in protein storage vacuole trafficking when plants are devoid of VTI12. SHOOT GRAVITROPSIM 4 (SGR4)%3B FUNCTIONS IN: receptor activity%3B INVOLVED IN: gravitropism%2C Golgi to vacuole transport%2C protein targeting to vacuole%3B LOCATED IN: in 7 components%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Vesicle transport v-SNARE%2C N-terminal (InterPro:IPR007705)%3B BEST Arabidopsis thaliana protein match is: vesicle transport V-snare 13 (TAIR:AT3G29100.1)%3B Has 744 Blast hits to 742 proteins in 201 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 276%3B Fungi - 144%3B Plants - 174%3B Viruses - 0%3B Other Eukaryotes - 150 (source: NCBI BLink). Chr5 + View
Arabidopsis thaliana AT1G26670 Vesicle transport v-SNARE family protein member of VTI1 Gene Family. Normally localizes to the transgolgi network and plasma membrane. A dominant mutation (zip1) alters the subcellular localization of VTI12 and suppresses loss of function mutation (zag1) of VTI11. Interacts with members of the SYP family. Involved in protein trafficking to protein storage vacuoles. VTI1B%3B CONTAINS InterPro DOMAIN/s: Vesicle transport v-SNARE%2C N-terminal (InterPro:IPR007705)%3B BEST Arabidopsis thaliana protein match is: Vesicle transport v-SNARE family protein (TAIR:AT5G39510.1)%3B Has 841 Blast hits to 839 proteins in 213 species: Archae - 2%3B Bacteria - 11%3B Metazoa - 288%3B Fungi - 144%3B Plants - 215%3B Viruses - 0%3B Other Eukaryotes - 181 (source: NCBI BLink). Chr1 + View
Brassica carinata BcaB03g14083 ChrB03 + View
Brassica napus C07p19490 C07 + View
Capsicum annuum CAN.G479.62 PGAv.1.6.scaffold479 + View
Corylus avellana Haze_11960 Similar to VTI12: Vesicle transport v-SNARE 12 (Arabidopsis thaliana OX%3D3702) 9 + View
Corylus avellana Haze_14499 Similar to VTI13: Vesicle transport v-SNARE 13 (Arabidopsis thaliana OX%3D3702) 5 + View
Coffea canephora Cc07_g03640 Vesicle transport v-SNARE 13 chr7 - View
Coffea canephora Cc11_g12590 26S proteasome non-ATPase regulatory subunit 11 chr11 + View
Carpinus fangiana Cfa007591 Cfa03 - View
Carpinus fangiana Cfa008931 Cfa03 + View
Cardamine hirsuta CARHR025290 Vesicle transport v-SNARE family protein Chr1 - View
Carya illinoinensis CiPaw.06G088400 K08493 - vesicle transport through interaction with t-SNAREs 1 (VTI1) Chr06 - View
Carya illinoinensis CiPaw.04G014900 K08493 - vesicle transport through interaction with t-SNAREs 1 (VTI1) Chr04 + View
Carica papaya Cpa.g.sc1.64 supercontig_1 - View
Carica papaya Cpa.g.sc13.295 supercontig_13 - View
Chenopodium quinoa AUR62021635 VTI13: Vesicle transport v-SNARE 13 C_Quinoa_Scaffold_1675 + View
Chenopodium quinoa AUR62008460 VTI13: Vesicle transport v-SNARE 13 C_Quinoa_Scaffold_3422 - View
Capsella rubella Carub.0001s2435 PTHR21230:SF33 - VESICLE TRANSPORT V-SNARE 12 scaffold_1 - View
Capsella rubella Carub.0005s0783 K08493 - vesicle transport through interaction with t-SNAREs 1 (VTI1) scaffold_5 - View
Cucumis sativus L. CsaV3_5G038260 Vesicle transport v-SNARE family protein chr5 - View
Daucus carota DCAR_016577 hypothetical protein DCARv2_Chr5 - View
Daucus carota DCAR_025386 hypothetical protein DCARv2_Chr7 - View
Daucus carota DCAR_030992 hypothetical protein DCARv2_Chr9 + View
Davidia involucrata Dinv16688 GWHABJS00000018 - View
Davidia involucrata Dinv33787 GWHABJS00000014 - View
Davidia involucrata Dinv10656 GWHABJS00000006 + View
Durio zibethinus Duzib187G0269 NW_019167860.1 - View
Durio zibethinus Duzib084G0084 NW_019167827.1 + View
Durio zibethinus Duzib147G0027 NW_019168470.1 + View
Durio zibethinus Duzib251G0860 NW_019167971.1 + View
Durio zibethinus Duzib264G1151 NW_019167960.1 - View
Eucalyptus grandis Eucgr.B00538 Chr02 - View
Eucalyptus grandis Eucgr.B03195 Chr02 + View
Erythranthe guttata Migut.L01246 scaffold_12 + View
Eutrema salsugineum Thhalv10008719m.g K08493 - vesicle transport through interaction with t-SNAREs 1 (VTI1) scaffold_5 + View
Eutrema salsugineum Thhalv10019111m.g K08493 - vesicle transport through interaction with t-SNAREs 1 (VTI1) scaffold_9 - View
Fragaria x ananassa FAN07G1147 K03036 - 26S proteasome regulatory subunit N6 (PSMD11, RPN6) Fvb4-4 - View
Fragaria x ananassa FAN08G3559 PTHR21230//PTHR21230:SF32 - VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED // SUBFAMILY NOT NAMED Fvb5-3 - View
Fragaria x ananassa FAN22G1706 K03036 - 26S proteasome regulatory subunit N6 (PSMD11, RPN6) Fvb4-1 + View
Fragaria x ananassa FAN13G2310 K08493 - vesicle transport through interaction with t-SNAREs 1 (VTI1) Fvb5-2 + View
Fragaria x ananassa FAN12G3169 K03036 - 26S proteasome regulatory subunit N6 (PSMD11, RPN6) Fvb4-3 - View
Fragaria x ananassa FAN18G2500 PTHR21230//PTHR21230:SF32 - VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED // SUBFAMILY NOT NAMED Fvb5-1 + View
Fragaria vesca FvH4_5g14550 K08493 - vesicle transport through interaction with t-SNAREs 1 (VTI1) Fvb5 + View
Fragaria vesca FvH4_4g30750 K03036 - 26S proteasome regulatory subunit N6 (PSMD11, RPN6) Fvb4 + View
Gossypium hirsutum Gohir.A05G368700 K08493 - vesicle transport through interaction with t-SNAREs 1 (VTI1) A05 - View
Gossypium hirsutum Gohir.D12G166300 K03036 - 26S proteasome regulatory subunit N6 (PSMD11, RPN6) D12 + View
Gossypium hirsutum Gohir.D11G035500 PTHR21230//PTHR21230:SF32//PTHR21230:SF33 - VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED // SUBFAMILY NOT NAMED // VESICLE TRANSPORT V-SNARE 12 D11 + View
Gossypium hirsutum Gohir.A11G032100 PTHR21230//PTHR21230:SF32 - VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED // SUBFAMILY NOT NAMED A11 + View
Gossypium hirsutum Gohir.A12G163300 K03036 - 26S proteasome regulatory subunit N6 (PSMD11, RPN6) A12 + View
Glycine max Glyma.01G052800 K08493 - vesicle transport through interaction with t-SNAREs 1 (VTI1) Gm01 - View
Glycine max Glyma.06G196300 K08493 - vesicle transport through interaction with t-SNAREs 1 (VTI1) Gm06 - View
Glycine max Glyma.04G166200 PTHR21230:SF33 - VESICLE TRANSPORT V-SNARE 12 Gm04 + View
Glycine max Glyma.02G111400 K08493 - vesicle transport through interaction with t-SNAREs 1 (VTI1) Gm02 - View
Gossypium raimondii Gorai.007G038300 Chr07 + View
Gossypium raimondii Gorai.012G051800 Chr12 + View
Gossypium raimondii Gorai.008G179100 Chr08 + View
Lupinus albus Lalb_Chr06g0175171 PTHR21230:SF33 - VESICLE TRANSPORT V-SNARE 12 Lalb_Chr06 + View
Lotus japonicus Lj2g0016475 PTHR21230//PTHR21230:SF32 - VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED // SUBFAMILY NOT NAMED chr2 - View
Lonicera japonica Lj5C108G5 GWHAAZE00000005 + View
Lonicera japonica Lj3C1033T11 GWHAAZE00000003 + View
Lactuca sativa Lsat_1_v5_gn_4_10620 Lsat_1_v8_lg_4 - View
Lactuca sativa Lsat_1_v5_gn_1_14341 PTHR21230:SF33 - VESICLE TRANSPORT V-SNARE 12 Lsat_1_v8_lg_1 - View
Malus domestica MD16G1067200 non-ATPase subunit 9 Chr16 + View
Malus domestica MD06G1197400 Vesicle transport v-SNARE family protein Chr06 - View
Malus domestica MD14G1204800 Vesicle transport v-SNARE family protein Chr14 - View
Malus domestica MD13G1068400 non-ATPase subunit 9 Chr13 + View
Manihot esculenta Manes.14G081600 Chromosome14 - View
Manihot esculenta Manes.01G032500 Chromosome01 + View
Nicotiana tabacum Nitab4.5_0001211g0220 Vesicle transport v-SNARE, N-terminal, t-SNARE Nitab4.5_0001211 + View
Olea europaea Oeu010228.1 chr18 - View
Petunia axillaris Peaxi162Scf00274g00346 Vesicle transport v-SNARE family protein Peaxi162Scf00274 + View
Petunia axillaris Peaxi162Scf00106g00424 Vesicle transport v-SNARE family protein Peaxi162Scf00106 - View
Punica granatum PGR083G0504 NC_045133.1 - View
Punica granatum PGR102G2715 NC_045129.1 - View
Prunus persica Prupe.5G198100 K08493 - vesicle transport through interaction with t-SNAREs 1 (VTI1) Pp05 - View
Prunus persica Prupe.1G279400 PTHR21230//PTHR21230:SF32 - VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED // SUBFAMILY NOT NAMED Pp01 - View
Pisum sativum Psat5g199400 Vesicle transport v-SNARE protein N-terminus chr5LG3 - View
Papaver somniferum PSO478G4939 NC_039361.1 + View
Populus trichocarpa Potri.008G091000 PTHR21230:SF33 - VESICLE TRANSPORT V-SNARE 12 Chr08 - View
Populus trichocarpa Potri.017G087700 K08493 - vesicle transport through interaction with t-SNAREs 1 (VTI1) Chr17 - View
Populus trichocarpa Potri.010G164200 K03036 - 26S proteasome regulatory subunit N6 (PSMD11, RPN6) Chr10 + View
Phaseolus vulgaris Phvul.004G031600 Chr04 - View
Phaseolus vulgaris Phvul.009G185300 K08493 - vesicle transport through interaction with t-SNAREs 1 (VTI1) Chr09 + View
Quercus lobata QL03p069708 3 - View
Quercus lobata QL10p017679 10 - View
Rosa chinensis RcHm_v2.0_Chr7g0182011 RcHm_v2.0_Chr7 - View
Rosa chinensis RcHm_v2.0_Chr4g0439141 RcHm_v2.0_Chr4 + View
Rhododendron simsii Rhsim08G0071700 chr08 - View
Salvia bowleyana SalBow7G3661 GWHASIU00000005 - View
Salix brachista Sabra17G0077500 GWHAAZH00000017 - View
Salix brachista Sabra10G0124700 GWHAAZH00000010 + View
Simmondsia chinensis Sc10g0003410 GWHAASQ00000010 + View
Simmondsia chinensis Sc11g0002150 GWHAASQ00000011 - View
Solanum lycopersicum Solyc03g115760.3 Vesicle transport v-SNARE protein (AHRD V3.3 *** A0A0K0XR76_TOBAC) SL4.0ch03 + View
Schrenkiella parvula Sp2g17740 K08493 - vesicle transport through interaction with t-SNAREs 1 (VTI1) ch2-4 - View
Schrenkiella parvula Sp1g22140 PTHR21230:SF33 - VESICLE TRANSPORT V-SNARE 12 ch1-1 - View
Schrenkiella parvula Sp5g24520 K08493 - vesicle transport through interaction with t-SNAREs 1 (VTI1) ch5-6 + View
Solanum pennellii Sopen03g034740 Encodes a member of SNARE gene family. Homologous with yeast VTI1 and is involved in vesicle transport. Mutant alleles such as sgr4/zig are defective in the shoots response to gravity resulting in a zigzag growth pattern of the stem. Involved in protein trafficking to lytic vacuoles. Can conditionally substitute VTI12 in protein storage vacuole trafficking when plants are devoid of VTI12. | SHOOT GRAVITROPSIM 4 (SGR4) | FUNCTIONS IN: receptor activity | INVOLVED IN: gravitropism, Golgi to vacuole transport, protein targeting to vacuole | LOCATED IN: in 7 components | EXPRESSED IN: 26 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Vesicle transport v-SNARE, N-terminal | BEST Arabidopsis thaliana protein match is: vesicle transport V-snare 13 Spenn-ch03 + View
Solanum tuberosum PGSC0003DMG400019502 Vesicle transport v-SNARE 11 ST4.03ch03 + View
Selenicereus undatus Hund09824 Scaffold_10417 - View
Selenicereus undatus Hund02626 Scaffold_33678 + View
Trochodendron aralioides TAR371G0661 group13 - View
Theobroma cacao Thecc.02G339600 26S proteasome non-ATPase regulatory subunit 11 Chromosome_2 + View
Theobroma cacao Thecc.04G087500 Vesicle transport v-SNARE family protein Chromosome_4 - View
Theobroma cacao Thecc.03G093800 Chromosome_3 - View
Tarenaya hassleriana THA.LOC104822906 vesicle transport v-SNARE 12 NW_010966822.1 + View
Tarenaya hassleriana THA.LOC104805482 vesicle transport v-SNARE 11-like NW_010961290.1 - View
Tarenaya hassleriana THA.LOC104823052 vesicle transport v-SNARE 13 NW_010960187.1 + View
Trifolium pratense TPR.G12201 Tp57577_TGAC_v2_LG3 - View
Tripterygium wilfordii TWI60G1196 NC_052246.1 - View
Vigna mungo VMungo1309G0761 CM024072.1 - View
Vitis vinifera GSVIVG01007964001 chr17 - View
Vitis vinifera GSVIVG01011463001 chr14 - View