Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Ah.02g114080 AmaHy_arrow1_Scaffold_2 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG3G18510 LG-3 - View
Acer truncatum Atru.chr9.564 chr9 - View
Actinidia chinensis Actinidia04822 Lachesis_group1 + View
Actinidia chinensis Actinidia16130 Lachesis_group13 + View
Arabidopsis lyrata AL6G18370 scaffold_6 + View
Arabidopsis lyrata AL8G37660 scaffold_8 - View
Avicennia marina MSTRG.22957 ScioBoG_3703_HRSCAF_3719 - View
Avicennia marina MSTRG.11337 ScioBoG_14204_HRSCAF_14270 - View
Aquilegia oxysepala Aqoxy3G03684 CHR03 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.J8WCL7 PTHR23273:SF4 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT arahy.Tifrunner.gnm1.Arahy.11 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.E3U0AR PTHR23273:SF4 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT arahy.Tifrunner.gnm1.Arahy.01 - View
Arabidopsis thaliana AT5G61000 Replication factor-A protein 1-like protein RPA70D%3B FUNCTIONS IN: DNA binding%2C nucleic acid binding%3B INVOLVED IN: DNA replication%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Replication factor-a protein 1 Rpa1 (InterPro:IPR004591)%2C Nucleic acid-binding%2C OB-fold-like (InterPro:IPR016027)%2C Nucleic acid-binding%2C OB-fold (InterPro:IPR012340)%2C Nucleic acid binding%2C OB-fold%2C tRNA/helicase-type (InterPro:IPR004365)%2C Replication factor A%2C C-terminal (InterPro:IPR013955)%2C Replication factor-A protein 1%2C N-terminal (InterPro:IPR007199)%3B BEST Arabidopsis thaliana protein match is: RPA70-kDa subunit B (TAIR:AT5G08020.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 - View
Arabidopsis thaliana AT5G08020 RPA70-kDa subunit B Encodes a homolog of Replication Protein A. rpa70b mutants are hypersensitive to UV-B radiation and MMS treatments suggesting a role for this protein in DNA damage repair. RPA70-kDa subunit B (RPA70B)%3B FUNCTIONS IN: DNA binding%2C nucleic acid binding%3B INVOLVED IN: DNA repair%2C response to UV-B%2C DNA replication%3B LOCATED IN: nucleus%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Replication factor-a protein 1 Rpa1 (InterPro:IPR004591)%2C Nucleic acid-binding%2C OB-fold-like (InterPro:IPR016027)%2C Nucleic acid-binding%2C OB-fold (InterPro:IPR012340)%2C Nucleic acid binding%2C OB-fold%2C tRNA/helicase-type (InterPro:IPR004365)%2C Replication factor A%2C C-terminal (InterPro:IPR013955)%2C Replication factor-A protein 1%2C N-terminal (InterPro:IPR007199)%3B BEST Arabidopsis thaliana protein match is: Replication factor-A protein 1-related (TAIR:AT5G61000.1)%3B Has 1056 Blast hits to 1045 proteins in 226 species: Archae - 10%3B Bacteria - 0%3B Metazoa - 213%3B Fungi - 147%3B Plants - 535%3B Viruses - 0%3B Other Eukaryotes - 151 (source: NCBI BLink). Chr5 + View
Brassica carinata BcaC06g33184 ChrC06 + View
Brassica carinata BcaB08g37297 ChrB08 - View
Brassica napus C07p44760 C07 - View
Brassica napus A09p07190 A09 - View
Brassica napus C09p08030 C09 - View
Brassica napus A03p46710 A03 - View
Brassica oleracea BolC9t53717H C9 - View
Brassica oleracea BolC7t44999H C7 - View
Brassica rapa BraA09t36368Z A09 - View
Brassica rapa BraA03t13794Z A03 - View
Beta vulgaris EL10Ac5g11138 PF01336//PF04057//PF08646//PF16900 - OB-fold nucleic acid binding domain (tRNA_anti-codon) // Replication factor-A protein 1, N-terminal domain (Rep-A_N) // Replication factor-A C terminal domain (Rep_fac-A_C) // Replication protein A OB domain (REPA_OB_2) Chr5_EL10_PGA_scaffold2 + View
Camellia sinensis var. sinensis CSS0043196 PREDICTED: replication protein A 70 kDa DNA-binding subunit B [Sesamum indicum] Chr15 + View
Camellia sinensis var. sinensis CSS0005493 PREDICTED: replication protein A 70 kDa DNA-binding subunit B [Sesamum indicum] Chr2 - View
Camellia sinensis var. sinensis CSS0009813 PREDICTED: replication protein A 70 kDa DNA-binding subunit B [Sesamum indicum] Contig581 + View
Capsicum annuum CAN.G1228.20 PGAv.1.6.scaffold1228 - View
Cannabis sativa CANSAT80G1236 NC_044372.1 - View
Cicer arietinum L. Ca_21769_v3 Ca_LG7_v3 - View
Corylus avellana Haze_07734 Similar to RPA1B: Replication protein A 70 kDa DNA-binding subunit B (Arabidopsis thaliana OX%3D3702) 4 + View
Citrus clementina Ciclev10019317m.g scaffold_3 + View
Carpinus fangiana Cfa019342 Cfa08 + View
Cardamine hirsuta CARHR274710 70 kDa subunit of replication protein A Chr8 - View
Cardamine hirsuta CARHR205160 70 kDa subunit of replication protein A Chr6 - View
Carya illinoinensis CiPaw.11G054100 KOG0851 - Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins Chr11 + View
Citrullus lanatus ClCG06G015600 Replication protein A 70 kDa DNA-binding subunit CG_Chr06 - View
Cucumis melo MELO3C017228.2 Replication protein A 70 kDa DNA-binding subunit chr02 - View
Chenopodium quinoa AUR62008537 RPA1B: Replication protein A 70 kDa DNA-binding subunit B C_Quinoa_Scaffold_3422 + View
Chenopodium quinoa AUR62021554 RPA1B: Replication protein A 70 kDa DNA-binding subunit B C_Quinoa_Scaffold_1675 - View
Capsella rubella Carub.0006s0691 KOG0851 - Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins scaffold_6 + View
Capsella rubella Carub.0008s2169 PF01336//PF04057//PF08646//PF16900 - OB-fold nucleic acid binding domain (tRNA_anti-codon) // Replication factor-A protein 1, N-terminal domain (Rep-A_N) // Replication factor-A C terminal domain (Rep_fac-A_C) // Replication protein A OB domain (REPA_OB_2) scaffold_8 - View
Cucumis sativus L. CsaV3_1G002970 Replication protein A subunit chr1 + View
Daucus carota DCAR_011568 hypothetical protein DCARv2_Chr3 - View
Daucus carota DCAR_023168 hypothetical protein DCARv2_Chr6 + View
Davidia involucrata Dinv22775 GWHABJS00000019 - View
Davidia involucrata Dinv17419 GWHABJS00000006 - View
Durio zibethinus Duzib084G0695 NW_019167827.1 + View
Durio zibethinus Duzib205G0152 NW_019168381.1 + View
Erigeron canadensis ECA247G3309 Conyza_canadensis_scaffold:7 - View
Eucalyptus grandis Eucgr.B00599 Chr02 + View
Eutrema salsugineum Thhalv10003822m.g KOG0851 - Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins scaffold_6 + View
Eutrema salsugineum Thhalv10013014m.g PF04057 - Replication factor-A protein 1, N-terminal domain (Rep-A_N) scaffold_2 + View
Fragaria x ananassa FAN08G1674 PTHR23273:SF4 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT Fvb5-3 + View
Fragaria x ananassa FAN13G2002 PTHR23273//PTHR23273:SF4 - REPLICATION FACTOR A 1, RFA1 // REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT Fvb5-2 - View
Fragaria x ananassa FAN18G4284 PTHR23273:SF4 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT Fvb5-1 - View
Fragaria vesca FvH4_5g13771 PTHR23273//PTHR23273:SF4 - REPLICATION FACTOR A 1, RFA1 // REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT Fvb5 - View
Gossypium hirsutum Gohir.D03G096700 PTHR23273:SF4 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT D03 + View
Gossypium hirsutum Gohir.A03G070300 PTHR23273:SF4 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A03 + View
Glycine max Glyma.17G078700 PTHR23273:SF4 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT Gm17 + View
Glycine max Glyma.05G020600 PTHR23273:SF4 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT Gm05 - View
Gossypium raimondii Gorai.003G101500 Chr03 + View
Hydrangea macrophylla Hma1.2p1_0060F.1_g033050 Hma1.2p1_0060F.1 - View
Lupinus albus Lalb_Chr13g0302831 PTHR23273//PTHR23273:SF4 - REPLICATION FACTOR A 1, RFA1 // REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT Lalb_Chr13 - View
Lupinus albus Lalb_Chr12g0197221 PTHR23273//PTHR23273:SF4 - REPLICATION FACTOR A 1, RFA1 // REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT Lalb_Chr12 + View
Lotus japonicus Lj4g0021262 PF01336//PF04057//PF08646//PF16900 - OB-fold nucleic acid binding domain (tRNA_anti-codon) // Replication factor-A protein 1, N-terminal domain (Rep-A_N) // Replication factor-A C terminal domain (Rep_fac-A_C) // Replication protein A OB domain (REPA_OB_2) chr4 - View
Lonicera japonica Lj9C471T8 GWHAAZE00000009 + View
Lonicera japonica Lj5A102T96 GWHAAZE00000005 - View
Lactuca sativa Lsat_1_v5_gn_1_14461 PF01336//PF04057//PF08646//PF16900 - OB-fold nucleic acid binding domain (tRNA_anti-codon) // Replication factor-A protein 1, N-terminal domain (Rep-A_N) // Replication factor-A C terminal domain (Rep_fac-A_C) // Replication protein A OB domain (REPA_OB_2) Lsat_1_v8_lg_1 + View
Malus domestica MD14G1212400 RPA70-kDa subunit B Chr14 + View
Malus domestica MD06G1225500 RPA70-kDa subunit B Chr06 + View
Manihot esculenta Manes.06G084200 Chromosome06 - View
Medicago truncatula Medtr4g109580 replication protein A 70 kDa protein chr4 + View
Nelumbo nucifera Nn4g23436 chr4 + View
Nelumbo nucifera Nn3g17458 chr3 + View
Olea europaea Oeu061166.1 chr10 - View
Oryza sativa ssp. japonica Os03g0214100 Replication protein A1. chr03 + View
Petunia axillaris Peaxi162Scf00201g00330 Replication protein A 70 kDa DNA-binding subunit B Peaxi162Scf00201 + View
Punica granatum PGR083G2843 NC_045133.1 + View
Prunus persica Prupe.5G205700 PTHR23273:SF4 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT Pp05 + View
Populus trichocarpa Potri.015G057300 PTHR23273:SF4 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT Chr15 + View
Phaseolus vulgaris Phvul.003G184400 PTHR23273:SF4 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT Chr03 - View
Quercus lobata QL10p019699 10 + View
Rosa chinensis RcHm_v2.0_Chr7g0183161 RcHm_v2.0_Chr7 + View
Rhododendron simsii Rhsim08G0145600 chr08 - View
Striga asiatica SGA_v2.0_scaffold25G10955 scaffold25 - View
Striga asiatica SGA_v2.0_scaffold28G11745 scaffold28 - View
Simmondsia chinensis Sc04g0004360 GWHAASQ00000004 + View
Sechium edule Sed0022878 LG08 + View
Sechium edule Sed0027547 LG12 + View
Sequoiadendron giganteum SEGI_23378 chr6 + View
Solanum lycopersicum Solyc03g115050.3 Replication protein A subunit (AHRD V3.3 *** A0A1U8FVY4_CAPAN) SL4.0ch03 - View
Schrenkiella parvula Sp2g24310 PTHR23273:SF4 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT ch2-4 - View
Schrenkiella parvula Sp6g34920 KOG0851 - Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins ch6-6 - View
Solanum pennellii Sopen03g034120 Encodes a homolog of Replication Protein A. rpa70b mutants are hypersensitive to UV-B radiation and MMS treatments suggesting a role for this protein in DNA damage repair. | RPA70-kDa subunit B (RPA70B) | FUNCTIONS IN: DNA binding, nucleic acid binding | INVOLVED IN: DNA repair, response to UV-B, DNA replication | LOCATED IN: nucleus | EXPRESSED IN: 19 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Replication factor-a protein 1 Rpa1 , Nucleic acid-binding, OB-fold-like , Nucleic acid-binding, OB-fold , Nucleic acid binding, OB-fold, tRNA/helicase-type , Replication factor A, C-terminal , Replication factor-A protein 1, N-terminal | BEST Arabidopsis thaliana protein match is: Replication factor-A protein 1-related Spenn-ch03 - View
Solanum tuberosum PGSC0003DMG400024634 70 kDa subunit of replication protein A ST4.03ch03 - View
Selenicereus undatus Hund09917 Scaffold_10417 + View
Selenicereus undatus Hund02583 Scaffold_33678 - View
Trochodendron aralioides TAR629G0759 group0 - View
Trochodendron aralioides TAR371G0671 group13 + View
Theobroma cacao Thecc.03G102500 Replication protein A 70 kDa DNA-binding subunit Chromosome_3 + View
Tarenaya hassleriana THA.LOC104804633 replication protein A 70 kDa DNA-binding subunit B NW_010960188.1 - View
Trifolium pratense TPR.G2021 Tp57577_TGAC_v2_LG5 - View
Tripterygium wilfordii TWI81G1098 NC_052251.1 + View
Vigna mungo VMungo1215G1142 CM024074.1 + View
Vitis vinifera GSVIVG01007849001 chr17 + View
Zea mays Zm00001eb400180 Zm00001e038720 Replication protein A 70 kDa DNA-binding subunit Replication protein A 70 kDa DNA-binding subunit B 9 - View