Gene: Carub.0008s2169
General Information
Structural Information
- Species Capsella rubella
- Gene Identifier Carub.0008s2169
- Transcript Identifier Carub.0008s2169.1
- Gene Type Coding gene
- Location scaffold_8 : 10810777-10813812 : negative
Gene Family Information
- ID HOM05D000824
- #Genes/#Species 721/99
- Phylogenetic origin
- ID ORTHO05D003555
- #Genes/#Species 215/97
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- id Carub.0008s2169.v1.1
- pacid 39252921
- synonym Carubv10026014m.g
Descriptions
- Description PF01336//PF04057//PF08646//PF16900 - OB-fold nucleic acid binding domain (tRNA_anti-codon) // Replication factor-A protein 1, N-terminal domain (Rep-A_N) // Replication factor-A C terminal domain (Rep_fac-A_C) // Replication protein A OB domain (REPA_OB_2)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006260 | IEA | InterPro | DNA replication | |
| GO:0006281 | IEA | InterPro | DNA repair | |
| GO:0006310 | IEA | InterPro | DNA recombination |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | Os03g0214100 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | InterPro | nucleus | |
| GO:0005662 | ISO | PLAZA Integrative Orthology | DNA replication factor A complex | Os03g0214100 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR004365 | OB-fold nucleic acid binding domain, AA-tRNA synthetase-type |
| IPR012340 | Nucleic acid-binding, OB-fold |
| IPR031657 | Replication protein A, OB domain |
| IPR013955 | Replication factor A, C-terminal |
| IPR004591 | Replication factor A protein 1 |
| IPR007199 | Replication factor-A protein 1, N-terminal |
| Mapman id | Description |
|---|---|
| 13.2.3.5.1 | Cell cycle organisation.DNA replication.elongation.single-stranded-DNA binding RPA complex.component RPA1 |
| 13.3.5.4.4.1 | Cell cycle organisation.mitosis and meiosis.meiotic recombination.DNA strand exchange.RPA presynaptic filament assembly factor complex.component RPA1 |