Gene: AT5G61000

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G61000
  • Transcript Identifier AT5G61000.1
  • Gene Type Coding gene
  • Location Chr5 : 24549682-24552641 : negative

Gene Family Information

  • ID HOM05D000824
  • #Genes/#Species 721/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G61000.1
  • symbol RPA70D
  • uniprot Q9FME0

Descriptions

  • Description Replication factor-A protein 1-like protein
  • Computational description RPA70D; FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: DNA replication; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Replication factor-a protein 1 Rpa1 (InterPro:IPR004591), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Replication factor A, C-terminal (InterPro:IPR013955), Replication factor-A protein 1, N-terminal (InterPro:IPR007199); BEST Arabidopsis thaliana protein match is: RPA70-kDa subunit B (TAIR:AT5G08020.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006310
IEA
GOA DatabaseDNA recombination
GO:0006310
IEA
InterProDNA recombination
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0006281
IEA
InterProDNA repair
GO:0006260
IEA
GOA DatabaseDNA replication
GO:0006260
IEA
InterProDNA replication
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0051321
IBA
Gene Ontologymeiotic cell cycle1
GO:0006289
IBA
Gene Ontologynucleotide-excision repair1
GO:0007004
IBA
Gene Ontologytelomere maintenance via telomerase1
GO:0000724
IBA
Gene Ontologydouble-strand break repair via homologous recombination1
GO:0006268
IBA
Gene OntologyDNA unwinding involved in DNA replication1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding Os03g0214100
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0043047
IBA
Gene Ontologysingle-stranded telomeric DNA binding1
GO:0003684
IBA
Gene Ontologydamaged DNA binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005634
IEA
InterPronucleus
GO:0005662
IBA
Gene OntologyDNA replication factor A complex1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013955 Replication factor A, C-terminal
IPR012340 Nucleic acid-binding, OB-fold
IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
IPR007199 Replication factor-A protein 1, N-terminal
IPR031657 Replication protein A, OB domain
IPR004591 Replication factor A protein 1
Mapman id Description
13.2.3.5.1 Cell cycle organisation.DNA replication.elongation.single-stranded-DNA binding RPA complex.component RPA1
13.3.5.4.4.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.DNA strand exchange.RPA presynaptic filament assembly factor complex.component RPA1