Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AUR62017561 TAF6: Transcription initiation factor TFIID subunit 6 C_Quinoa_Scaffold_3458 - View
AUR62020321 TAF6: Transcription initiation factor TFIID subunit 6 C_Quinoa_Scaffold_1373 - View
AUR62015100 TAF6: Transcription initiation factor TFIID subunit 6 C_Quinoa_Scaffold_2888 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG3G11260 LG-3 - View
Acer truncatum Atru.chr6.3305 chr6 + View
Acer truncatum Atru.chr2.3540 chr2 + View
Actinidia chinensis Actinidia00113 Lachesis_group10 + View
Actinidia chinensis Actinidia10787 Lachesis_group15 - View
Actinidia chinensis Actinidia35374 Lachesis_group2 - View
Arabidopsis lyrata AL8G30834 scaffold_8 - View
Avicennia marina MSTRG.6966 ScioBoG_102840_HRSCAF_103099 + View
Amaranthus hybridus Ah.04g166260 AmaHy_arrow1_Scaffold_4 + View
Aquilegia oxysepala Aqoxy1G04095 CHR01 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.DAYY2D K02153 - V-type H+-transporting ATPase subunit e (ATPeV0E, ATP6H) arahy.Tifrunner.gnm1.Arahy.07 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.FLZ4J4 KOG2549 - Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) arahy.Tifrunner.gnm1.Arahy.01 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.UV2YJP PTHR12263:SF4 - ATPASE, V0 COMPLEX, SUBUNIT E arahy.Tifrunner.gnm1.Arahy.17 - View
Arabidopsis thaliana AT5G55290 ATPase, V0 complex, subunit E ATPase%2C V0 complex%2C subunit E%3B FUNCTIONS IN: hydrogen ion transmembrane transporter activity%3B INVOLVED IN: ATP hydrolysis coupled proton transport%3B LOCATED IN: vacuole%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C V0 complex%2C subunit E (InterPro:IPR008389)%3B BEST Arabidopsis thaliana protein match is: ATPase%2C V0 complex%2C subunit E (TAIR:AT4G26710.2)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). Chr5 - View
Arabidopsis thaliana AT4G26710 ATPase, V0 complex, subunit E ATPase%2C V0 complex%2C subunit E%3B FUNCTIONS IN: hydrogen ion transmembrane transporter activity%3B INVOLVED IN: ATP hydrolysis coupled proton transport%3B LOCATED IN: vacuole%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C V0 complex%2C subunit E (InterPro:IPR008389)%3B BEST Arabidopsis thaliana protein match is: ATPase%2C V0 complex%2C subunit E (TAIR:AT5G55290.2)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr4 + View
Brassica carinata BcaB05g22197 ChrB05 - View
Brassica carinata BcaC03g14248 ChrC03 + View
Brassica napus C01p22800 C01 - View
Brassica napus A02p09760 A02 + View
Brassica napus A01p17980 A01 - View
Brassica napus C02p16290 C02 + View
Brassica napus A03p56890 A03 - View
Brassica napus C07p55180 C07 + View
Brassica oleracea BolC1t02210H C1 - View
Brassica rapa BraA02t06040Z A02 + View
Brassica rapa BraA01t01753Z A01 - View
Brassica rapa BraA03t10716Z A03 + View
Beta vulgaris EL10Ac4g07675 K03131 - transcription initiation factor TFIID subunit 6 (TAF6) Chr4_EL10_PGA_scaffold1 - View
Camellia sinensis var. sinensis CSS0039282 PREDICTED: V-type proton ATPase subunit e-like [Glycine max] Chr7 + View
Camellia sinensis var. sinensis CSS0048655 PREDICTED: V-type proton ATPase subunit e [Glycine max] Chr5 + View
Capsicum annuum CAN.G337.48 PGAv.1.6.scaffold337 - View
Cannabis sativa CANSAT11G2616 NC_044377.1 - View
Cicer arietinum L. Ca_14770_v3 Ca_LG5_v3 + View
Corylus avellana Haze_09753 Similar to TAF6: Transcription initiation factor TFIID subunit 6 (Arabidopsis thaliana OX%3D3702) 4 + View
Corylus avellana Haze_12731 Similar to TAF6: Transcription initiation factor TFIID subunit 6 (Arabidopsis thaliana OX%3D3702) 5 - View
Coffea canephora Cc05_g14400 Putative Transcription initiation factor TFIID subunit 6 chr5 + View
Citrus clementina Ciclev10007970m.g scaffold_1 + View
Citrus clementina Ciclev10014827m.g scaffold_2 + View
Ceratophyllum demersum CDE06G1567 4 + View
Ceratophyllum demersum CDE04G2962 2 + View
Carpinus fangiana Cfa020269 Cfa08 - View
Carpinus fangiana Cfa014286 Cfa06 - View
Cardamine hirsuta CARHR268660 ATPase, V0 complex, subunit E Chr8 - View
Cardamine hirsuta CARHR234330 ATPase, V0 complex, subunit E Chr7 + View
Carya illinoinensis CiPaw.03G275100 K03131 - transcription initiation factor TFIID subunit 6 (TAF6) Chr03 + View
Carya illinoinensis CiPaw.12G134400 K02153 - V-type H+-transporting ATPase subunit e (ATPeV0E, ATP6H) Chr12 - View
Carya illinoinensis CiPaw.11G195500 K03131 - transcription initiation factor TFIID subunit 6 (TAF6) Chr11 + View
Citrullus lanatus ClCG10G004920 Transcription initiation factor TFIID subunit CG_Chr10 + View
Cucumis melo MELO3C013122.2 V-type proton ATPase subunit e1 chr01 + View
Carica papaya Cpa.g.sc132.56 supercontig_132 + View
Carica papaya Cpa.g.sc12.231 supercontig_12 + View
Capsella rubella Carub.0007s1413 K02153 - V-type H+-transporting ATPase subunit e (ATPeV0E, ATP6H) scaffold_7 - View
Capsella rubella Carub.0008s1562 K02153 - V-type H+-transporting ATPase subunit e (ATPeV0E, ATP6H) scaffold_8 - View
Daucus carota DCAR_019732 hypothetical protein DCARv2_Chr5 - View
Daucus carota DCAR_016645 hypothetical protein DCARv2_Chr5 - View
Davidia involucrata Dinv40801 GWHABJS00000013 - View
Davidia involucrata Dinv08700 GWHABJS00000013 - View
Durio zibethinus Duzib213G0269 NW_019167993.1 + View
Durio zibethinus Duzib268G1739 NW_019168270.1 - View
Durio zibethinus Duzib170G0444 NW_019167871.1 - View
Erigeron canadensis ECA246G1860 Conyza_canadensis_scaffold:8 - View
Eucalyptus grandis Eucgr.F00645 Chr06 + View
Eucalyptus grandis Eucgr.F03511 Chr06 - View
Eucalyptus grandis Eucgr.K00716 Chr11 - View
Erythranthe guttata Migut.H01785 scaffold_8 + View
Erythranthe guttata Migut.M01699 scaffold_13 + View
Eutrema salsugineum Thhalv10015209m.g K02153 - V-type H+-transporting ATPase subunit e (ATPeV0E, ATP6H) scaffold_2 + View
Eutrema salsugineum Thhalv10026732m.g scaffold_1 - View
Fragaria x ananassa FAN02G0816 PTHR10221//PTHR10221:SF11 - TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 // TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6B Fvb6-4 - View
Fragaria x ananassa FAN21G3843 PTHR10221 - TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 Fvb3-2 + View
Fragaria x ananassa FAN09G2342 K03131 - transcription initiation factor TFIID subunit 6 (TAF6) Fvb6-2 + View
Fragaria x ananassa FAN05G0005 K03131 - transcription initiation factor TFIID subunit 6 (TAF6) Fvb6-3 + View
Fragaria x ananassa FAN25G2799 K03131 - transcription initiation factor TFIID subunit 6 (TAF6) Fvb3-1 - View
Fragaria x ananassa FAN11G0198 K02153 - V-type H+-transporting ATPase subunit e (ATPeV0E, ATP6H) Fvb3-4 + View
Fragaria x ananassa FAN16G3611 K03131 - transcription initiation factor TFIID subunit 6 (TAF6) Fvb3-3 + View
Fragaria vesca FvH4_6g41670 K03131 - transcription initiation factor TFIID subunit 6 (TAF6) Fvb6 - View
Fragaria vesca FvH4_3g23640 K03131 - transcription initiation factor TFIID subunit 6 (TAF6) Fvb3 + View
Gossypium hirsutum Gohir.A13G136100 K02153 - V-type H+-transporting ATPase subunit e (ATPeV0E, ATP6H) A13 - View
Gossypium hirsutum Gohir.D13G140400 K02153 - V-type H+-transporting ATPase subunit e (ATPeV0E, ATP6H) D13 - View
Gossypium hirsutum Gohir.D05G375100 K02153 - V-type H+-transporting ATPase subunit e (ATPeV0E, ATP6H) D05 + View
Gossypium hirsutum Gohir.A04G011400 K03131 - transcription initiation factor TFIID subunit 6 (TAF6) A04 - View
Glycine max Glyma.14G017500 K02153 - V-type H+-transporting ATPase subunit e (ATPeV0E, ATP6H) Gm14 - View
Glycine max Glyma.18G089300 K02153 - V-type H+-transporting ATPase subunit e (ATPeV0E, ATP6H) Gm18 - View
Glycine max Glyma.08G322700 K03131 - transcription initiation factor TFIID subunit 6 (TAF6) Gm08 + View
Glycine max Glyma.02G295900 K02153 - V-type H+-transporting ATPase subunit e (ATPeV0E, ATP6H) Gm02 + View
Gossypium raimondii Gorai.013G157000 Chr13 - View
Gossypium raimondii Gorai.009G444000 Chr09 + View
Helianthus annuus HanXRQChr03g0076901 Probable ATPase, V0 complex, subunit E HanXRQChr03 - View
Hydrangea macrophylla Hma1.2p1_0036F.1_g023010 Hma1.2p1_0036F.1 + View
Lupinus albus Lalb_Chr20g0115801 PTHR10221:SF11 - TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6B Lalb_Chr20 + View
Lotus japonicus Lj6g0025719 K02153 - V-type H+-transporting ATPase subunit e (ATPeV0E, ATP6H) chr6 - View
Lotus japonicus LjContig00272g0021661 K02153 - V-type H+-transporting ATPase subunit e (ATPeV0E, ATP6H) Contig00272 + View
Lonicera japonica Lj8A174G68 GWHAAZE00000008 + View
Lonicera japonica Lj8C131G11 GWHAAZE00000008 + View
Lactuca sativa Lsat_1_v5_gn_5_2821 Lsat_1_v8_lg_5 + View
Lactuca sativa Lsat_1_v5_gn_9_90821 Lsat_1_v8_lg_9 + View
Malus domestica MD11G1208300 ATPase Chr11 + View
Malus domestica MD09G1117900 TATA BOX ASSOCIATED FACTOR II 59 Chr09 + View
Malus domestica MD05G1357400 ATPase Chr05 + View
Malus domestica MD03G1192100 ATPase Chr03 + View
Manihot esculenta Manes.15G065300 Chromosome15 + View
Manihot esculenta Manes.03G135700 Chromosome03 - View
Medicago truncatula Medtr5g094130 ATPase, V0 complex, subunit E chr5 + View
Medicago truncatula Medtr3g055240 TATA-binding protein associated factor chr3 + View
Nicotiana tabacum Nitab4.5_0001160g0050 Domain of unknown function DUF1546 Nitab4.5_0001160 + View
Nicotiana tabacum Nitab4.5_0004445g0040 Histone-fold, Armadillo-type fold, TATA box binding protein associated factor (TAF), Domain of unknown function DUF1546, Armadillo-like helical Nitab4.5_0004445 - View
Olea europaea Oeu007991.1 chr21 + View
Olea europaea Oeu019638.1 chr6 + View
Petunia axillaris Peaxi162Scf00235g00825 Transcription initiation factor TFIID subunit 6 Peaxi162Scf00235 + View
Punica granatum PGR142G0662 NC_045128.1 + View
Punica granatum PGR083G1700 NC_045133.1 + View
Prunus persica Prupe.4G224900 K03131 - transcription initiation factor TFIID subunit 6 (TAF6) Pp04 + View
Prunus persica Prupe.3G206000 Pp03 - View
Populus trichocarpa Potri.001G359400 K03131 - transcription initiation factor TFIID subunit 6 (TAF6) Chr01 + View
Populus trichocarpa Potri.014G161100 K03131 - transcription initiation factor TFIID subunit 6 (TAF6) Chr14 + View
Phaseolus vulgaris Phvul.006G049000 K03131 - transcription initiation factor TFIID subunit 6 (TAF6) Chr06 + View
Quercus lobata QL08p029804 8 + View
Rosa chinensis RcHm_v2.0_Chr2g0157381 RcHm_v2.0_Chr2 - View
Rosa chinensis RcHm_v2.0_Chr5g0041701 RcHm_v2.0_Chr5 + View
Rhododendron simsii Rhsim04G0046100 chr04 - View
Rhododendron simsii Rhsim06G0224300 chr06 + View
Striga asiatica SGA_v2.0_scaffold171G38904 scaffold171 - View
Salvia bowleyana SalBow8G1454 GWHASIU00000004 + View
Salix brachista Sabra14G0122800 GWHAAZH00000014 + View
Salix brachista Sabra16G0237100 GWHAAZH00000016 + View
Simmondsia chinensis Sc03g0008250 GWHAASQ00000003 + View
Simmondsia chinensis Sc16g0005670 GWHAASQ00000016 - View
Sechium edule Sed0003822 LG08 - View
Sechium edule Sed0022155 LG07 - View
Sapria himalayana SHI26567 scaffold60_3140063 - View
Solanum lycopersicum Solyc07g065040.3 Transcription initiation factor TFIID subunit 6b (AHRD V3.3 *** A0A2G3C2L0_CAPCH) SL4.0ch07 + View
Schrenkiella parvula Sp6g17210 K02153 - V-type H+-transporting ATPase subunit e (ATPeV0E, ATP6H) ch6-6 - View
Schrenkiella parvula Sp7g24710 K02153 - V-type H+-transporting ATPase subunit e (ATPeV0E, ATP6H) ch7-4 - View
Solanum pennellii Sopen07g033250 Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6. Mutants are embryo lethal and transmission of the mutant allele through the male gametophyte is significantly reduced. This is due to reduced pollen tube growth of the mutant. | TATA BOX ASSOCIATED FACTOR II 59 (TAFII59) | FUNCTIONS IN: RNA polymerase II transcription factor activity, DNA binding, transcription initiation factor activity | INVOLVED IN: pollen tube growth, transcription initiation | LOCATED IN: nucleus | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1546 , Histone-fold , TATA box binding protein associated factor (TAF) | BEST Arabidopsis thaliana protein match is: TBP-ASSOCIATED FACTOR 6B Spenn-ch07 + View
Solanum pennellii Sopen10g002050 Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6. Mutants are embryo lethal and transmission of the mutant allele through the male gametophyte is significantly reduced. This is due to reduced pollen tube growth of the mutant. | TATA BOX ASSOCIATED FACTOR II 59 (TAFII59) | FUNCTIONS IN: RNA polymerase II transcription factor activity, DNA binding, transcription initiation factor activity | INVOLVED IN: pollen tube growth, transcription initiation | LOCATED IN: nucleus | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1546 , Histone-fold , TATA box binding protein associated factor (TAF) | BEST Arabidopsis thaliana protein match is: TBP-ASSOCIATED FACTOR 6B Spenn-ch10 - View
Solanum tuberosum PGSC0003DMG400022296 Transcription initiation factor tfiid ST4.03ch07 + View
Solanum tuberosum PGSC0003DMG400001082 ATP synthase subunit H protein ST4.03ch07 - View
Solanum tuberosum PGSC0003DMG400014413 Transcription initiation factor tfiid ST4.03ch10 - View
Selenicereus undatus Hund01948 Scaffold_33678 - View
Trochodendron aralioides TAR629G2464 group0 - View
Trochodendron aralioides TAR627G0748 group6 - View
Trochodendron aralioides TAR626G1331 group3 - View
Theobroma cacao Thecc.07G026100 Transcription initiation factor tfiid Chromosome_7 + View
Tarenaya hassleriana THA.LOC104817690 V-type proton ATPase subunit e1 NW_010966021.1 - View
Tarenaya hassleriana THA.LOC104811636 V-type proton ATPase subunit e1-like NW_010965372.1 - View
Trifolium pratense TPR.G32247 Tp57577_TGAC_v2_LG3 - View
Tripterygium wilfordii TWI38G1361 NC_052252.1 - View
Tripterygium wilfordii TWI39G1192 NC_052250.1 + View
Tripterygium wilfordii TWI75G1639 NC_052253.1 + View
Tripterygium wilfordii TWI38G0624 NC_052252.1 + View
Vaccinium macrocarpon vmacro09683 Similar to VHA-e2: V-type proton ATPase subunit e2 (Arabidopsis thaliana OX%3D3702) chr6_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro11580 Similar to VHA-e1: V-type proton ATPase subunit e1 (Arabidopsis thaliana OX%3D3702) chr11_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro09377 Similar to TAF6: Transcription initiation factor TFIID subunit 6 (Arabidopsis thaliana OX%3D3702) chr6_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0540G2440 CM024075.1 - View
Vitis vinifera GSVIVG01037737001 chr19 + View