Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT2G17870 cold shock domain protein 3 Encodes COLD SHOCK DOMAIN PROTEIN 3 (CSP3)%2C involved in the acquisition of freezing tolerance. cold shock domain protein 3 (CSP3)%3B FUNCTIONS IN: DNA binding%2C zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: response to cold%2C DNA duplex unwinding%3B LOCATED IN: nucleus%2C cytoplasm%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Nucleic acid-binding%2C OB-fold (InterPro:IPR012340)%2C Cold-shock conserved site (InterPro:IPR019844)%2C Zinc finger%2C CCHC retroviral-type (InterPro:IPR013084)%2C Cold shock protein (InterPro:IPR011129)%2C Nucleic acid-binding%2C OB-fold-like (InterPro:IPR016027)%2C Zinc finger%2C CCHC-type (InterPro:IPR001878)%2C Cold-shock protein%2C DNA-binding (InterPro:IPR002059)%3B BEST Arabidopsis thaliana protein match is: cold shock domain protein 1 (TAIR:AT4G36020.1)%3B Has 72472 Blast hits to 41123 proteins in 2889 species: Archae - 51%3B Bacteria - 27281%3B Metazoa - 11105%3B Fungi - 2852%3B Plants - 6181%3B Viruses - 14957%3B Other Eukaryotes - 10045 (source: NCBI BLink). Chr2 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG8G15070 LG-8 - View
Aethionema arabicum Aa31LG6G12980 LG-6 - View
Acer truncatum Atru.chr5.3282 chr5 + View
Acer truncatum Atru.chr3.812 chr3 + View
Actinidia chinensis Actinidia00609 Lachesis_group12 - View
Actinidia chinensis Actinidia28707 Lachesis_group8 - View
Actinidia chinensis Actinidia22969 Lachesis_group26 - View
Actinidia chinensis Actinidia17437 Lachesis_group11 + View
Arabidopsis lyrata AL7G15030 scaffold_7 + View
Arabidopsis lyrata AL3G50910 scaffold_3 - View
Avicennia marina MSTRG.2720 ScioBoG_102835_HRSCAF_103059 + View
Avicennia marina MSTRG.23403 ScioBoG_3895_HRSCAF_3912 - View
Amaranthus hybridus Ah.03g148860 Cold shock domain-containing protein 3 (AtCSP3) AmaHy_arrow1_Scaffold_3 + View
Amaranthus hybridus Ah.01g008750 Cold shock domain-containing protein 4 (AtCSP4) (Glycine-rich protein 2b) (AtGRP2b) AmaHy_arrow1_Scaffold_1 - View
Amaranthus hybridus Ah.01g022780 Cold shock protein 1 (AtCSP1) (Cold shock domain-containing protein 1) AmaHy_arrow1_Scaffold_1 + View
Aquilegia oxysepala Aqoxy5G01801 CHR05 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.LSB155 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) arahy.Tifrunner.gnm1.Arahy.13 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.LP1JBF PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) arahy.Tifrunner.gnm1.Arahy.03 + View
Brassica napus C07p61470 C07 - View
Brassica napus C07p05200 C07 + View
Brassica napus A03p64010 A03 - View
Brassica napus A07p03050 A07 + View
Brassica napus C01p03000 C01 + View
Brassica napus A01p02700 A01 + View
Brassica oleracea BolC7t40917H C7 + View
Brassica oleracea BolC1t00286H C1 + View
Brassica oleracea BolC7t46572H C7 - View
Brassica rapa BraA03t15468Z A03 - View
Brassica rapa BraA07t28102Z A07 + View
Brassica rapa BraA01t00256Z A01 + View
Beta vulgaris EL10Ac6g15483 PTHR11544//PTHR11544:SF50 - COLD SHOCK DOMAIN CONTAINING PROTEINS // SUBFAMILY NOT NAMED Chr6_EL10_PGA_scaffold0 + View
Beta vulgaris EL10Ac9g21411 PF00313 - 'Cold-shock' DNA-binding domain (CSD) Chr9_EL10_PGA_scaffold8 - View
Camellia sinensis var. sinensis CSS0033859 Glycine-rich protein 2b [Morus notabilis] Chr3 - View
Camellia sinensis var. sinensis CSS0047849 hypothetical protein VITISV_042163 [Vitis vinifera] Chr2 - View
Camellia sinensis var. sinensis CSS0028878 Glycine-rich protein 2b [Morus notabilis] Chr6 - View
Capsicum annuum CAN.G1274.12 PGAv.1.6.scaffold1274 + View
Capsicum annuum CAN.G354.37 PGAv.1.6.scaffold354 + View
Capsicum annuum CAN.G588.45 PGAv.1.6.scaffold588 - View
Cicer arietinum L. Ca_19047_v3 Ca_LG6_v3 + View
Cicer arietinum L. Ca_22383_v3 Ca_LG7_v3 + View
Corylus avellana Haze_02169 Similar to CSP4: Cold shock domain-containing protein 4 (Arabidopsis thaliana OX%3D3702) 1 - View
Coffea canephora Cc07_g10830 Putative DNA-binding protein HEXBP chr7 + View
Coffea canephora Cc02_g16400 Glycine-rich protein 2b chr2 - View
Citrus clementina Ciclev10027474m.g scaffold_7 - View
Carpinus fangiana Cfa006980 Cfa02 + View
Carpinus fangiana Cfa005217 Cfa02 + View
Cardamine hirsuta CARHR244420 Cold shock protein, putative Chr7 - View
Cardamine hirsuta CARHR108370 Cold shock protein-1 Chr3 - View
Carya illinoinensis CiPaw.05G079500 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) Chr05 + View
Carya illinoinensis CiPaw.07G059600 K09250 - cellular nucleic acid-binding protein (CNBP) Chr07 + View
Carya illinoinensis CiPaw.08G131100 K09250 - cellular nucleic acid-binding protein (CNBP) Chr08 - View
Carya illinoinensis CiPaw.06G123800 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) Chr06 - View
Citrullus lanatus ClCG10G000710 Cold shock protein-1 CG_Chr10 - View
Citrullus lanatus ClCG02G004220 glycine-rich protein 2B LENGTH=201 CG_Chr02 - View
Cucumis melo MELO3C013764.2 cold shock domain-containing protein 3 chr06 - View
Carica papaya Cpa.g.sc37.170 supercontig_37 - View
Carica papaya Cpa.g.sc6.261 supercontig_6 + View
Chenopodium quinoa AUR62013061 CSP4: Cold shock domain-containing protein 4 C_Quinoa_Scaffold_1040 - View
Chenopodium quinoa AUR62029473 GRP-2: Glycine-rich protein 2 C_Quinoa_Scaffold_3036 + View
Capsella rubella Carub.0007s0421 K09250 - cellular nucleic acid-binding protein (CNBP) scaffold_7 + View
Capsella rubella Carub.0003s3202 K09250 - cellular nucleic acid-binding protein (CNBP) scaffold_3 - View
Cucumis sativus L. CsaV3_3G000760 Cold shock protein chr3 - View
Daucus carota DCAR_021506 hypothetical protein DCARv2_Chr6 - View
Daucus carota DCAR_003153 hypothetical protein DCARv2_Chr1 + View
Davidia involucrata Dinv04947 GWHABJS00000005 - View
Davidia involucrata Dinv40094 GWHABJS00000014 - View
Davidia involucrata Dinv33640 GWHABJS00000012 + View
Davidia involucrata Dinv41961 GWHABJS00000002 + View
Durio zibethinus Duzib147G0333 NW_019168470.1 + View
Durio zibethinus Duzib187G0947 NW_019167860.1 + View
Durio zibethinus Duzib132G0788 NW_019167915.1 - View
Erigeron canadensis ECA246G3182 Conyza_canadensis_scaffold:8 + View
Erigeron canadensis ECA232G1335 Conyza_canadensis_scaffold:2 + View
Eucalyptus grandis Eucgr.I01395 Chr09 + View
Erythranthe guttata Migut.B00101 scaffold_2 - View
Erythranthe guttata Migut.N03300 scaffold_14 - View
Erythranthe guttata Migut.N01302 scaffold_14 + View
Erythranthe guttata Migut.H02169 scaffold_8 + View
Eutrema salsugineum Thhalv10026001m.g KOG3070 - Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing scaffold_1 + View
Eutrema salsugineum Thhalv10022795m.g K09250 - cellular nucleic acid-binding protein (CNBP) scaffold_11 + View
Fragaria x ananassa FAN19G0068 K09250 - cellular nucleic acid-binding protein (CNBP) Fvb1-4 - View
Fragaria x ananassa FAN28G0124 K09250 - cellular nucleic acid-binding protein (CNBP) Fvb1-1 + View
Fragaria x ananassa FAN27G2057 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) Fvb2-1 - View
Fragaria vesca FvH4_2g01580 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) Fvb2 - View
Fragaria vesca FvH4_1g11721 K09250 - cellular nucleic acid-binding protein (CNBP) Fvb1 - View
Gossypium hirsutum Gohir.D12G059500 K09250 - cellular nucleic acid-binding protein (CNBP) D12 - View
Gossypium hirsutum Gohir.D02G225400 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) D02 + View
Gossypium hirsutum Gohir.A11G174600 K09250 - cellular nucleic acid-binding protein (CNBP) A11 - View
Gossypium hirsutum Gohir.D11G182000 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) D11 - View
Gossypium hirsutum Gohir.A03G204101 PF00313 - 'Cold-shock' DNA-binding domain (CSD) A03 + View
Gossypium hirsutum Gohir.A12G059100 K09250 - cellular nucleic acid-binding protein (CNBP) A12 - View
Gossypium hirsutum Gohir.A01G165500 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) A01 + View
Glycine max Glyma.02G047500 PTHR11544//PTHR11544:SF50 - COLD SHOCK DOMAIN CONTAINING PROTEINS // SUBFAMILY NOT NAMED Gm02 - View
Glycine max Glyma.16G127200 PTHR11544//PTHR11544:SF50 - COLD SHOCK DOMAIN CONTAINING PROTEINS // SUBFAMILY NOT NAMED Gm16 - View
Glycine max Glyma.12G030800 PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS Gm12 + View
Glycine max Glyma.11G105900 PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS Gm11 + View
Glycine max Glyma.04G004900 PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS Gm04 + View
Gossypium raimondii Gorai.002G195000 Chr02 + View
Gossypium raimondii Gorai.005G253200 Chr05 + View
Gossypium raimondii Gorai.007G193700 Chr07 - View
Gossypium raimondii Gorai.008G062500 Chr08 - View
Helianthus annuus HanXRQChr16g0531371 Putative zinc finger, CCHC-type; Nucleic acid-binding, OB-fold HanXRQChr16 - View
Lupinus albus Lalb_Chr16g0377481 K09250 - cellular nucleic acid-binding protein (CNBP) Lalb_Chr16 - View
Lotus japonicus Lj3g0005027 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) chr3 + View
Lotus japonicus Lj4g0019693 K09250 - cellular nucleic acid-binding protein (CNBP) chr4 - View
Lactuca sativa Lsat_1_v5_gn_3_73060 Lsat_1_v8_lg_3 - View
Lactuca sativa Lsat_1_v5_gn_3_46880 KOG3070 - Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing Lsat_1_v8_lg_3 + View
Magnolia biondii MBI05_g05279_MAGBIO AED:0.10 Chr05 + View
Malus domestica MD15G1244400 cold shock domain protein 1 Chr15 - View
Malus domestica MD10G1121500 glycine-rich protein 2B Chr10 + View
Malus domestica MD02G1130700 cold shock domain protein 1 Chr02 - View
Manihot esculenta Manes.11G083125 Chromosome11 + View
Manihot esculenta Manes.02G105200 Chromosome02 + View
Manihot esculenta Manes.01G146700 Chromosome01 + View
Manihot esculenta Manes.04G076800 Chromosome04 - View
Nelumbo nucifera Nn1g05930 chr1 + View
Nicotiana tabacum Nitab4.5_0000864g0100 Zinc finger, CCHC-type, Cold-shock protein, DNA-binding, Cold-shock conserved site, Nucleic acid-binding, OB-fold, Cold shock protein Nitab4.5_0000864 + View
Olea europaea Oeu035316.1 chr17 - View
Oryza sativa ssp. japonica Os02g0121100 Zinc finger, CCHC-type domain containing protein. chr02 - View
Petunia axillaris Peaxi162Scf00635g00039 Unknown protein Peaxi162Scf00635 + View
Petunia axillaris Peaxi162Scf00362g00091 cold shock domain protein 3 Peaxi162Scf00362 + View
Petunia axillaris Peaxi162Scf00328g00105 Unknown protein Peaxi162Scf00328 - View
Punica granatum PGR042G3941 NC_045130.1 - View
Punica granatum PGR102G2741 NC_045129.1 + View
Punica granatum PGR142G2913 NC_045128.1 - View
Prunus persica Prupe.8G163000 KOG3070 - Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing Pp08 + View
Prunus persica Prupe.7G169300 K09250 - cellular nucleic acid-binding protein (CNBP) Pp07 + View
Pisum sativum Psat4g100480 'Cold-shock' DNA-binding domain chr4LG4 - View
Papaver somniferum PSO700G0115 NW_020620825.1 + View
Populus trichocarpa Potri.007G057100 PTHR11544//PTHR11544:SF50 - COLD SHOCK DOMAIN CONTAINING PROTEINS // SUBFAMILY NOT NAMED Chr07 - View
Populus trichocarpa Potri.004G172600 KOG3070 - Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing Chr04 + View
Populus trichocarpa Potri.005G112800 PTHR11544//PTHR11544:SF50 - COLD SHOCK DOMAIN CONTAINING PROTEINS // SUBFAMILY NOT NAMED Chr05 - View
Populus trichocarpa Potri.009G132000 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) Chr09 + View
Phaseolus vulgaris Phvul.011G033900 PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS Chr11 + View
Phaseolus vulgaris Phvul.003G263300 PTHR11544//PTHR11544:SF50 - COLD SHOCK DOMAIN CONTAINING PROTEINS // SUBFAMILY NOT NAMED Chr03 + View
Quercus lobata QL11p049250 11 + View
Rosa chinensis RcHm_v2.0_Chr2g0099321 RcHm_v2.0_Chr2 - View
Rhododendron simsii Rhsim11G0190900 chr11 + View
Rhododendron simsii Rhsim10G0211300 chr10 - View
Rhododendron simsii Rhsim08G0033300 chr08 - View
Rhododendron simsii Rhsim05G0062100 chr05 - View
Striga asiatica SGA_v2.0_scaffold58G20405 scaffold58 - View
Salix brachista Sabra09G0102400 GWHAAZH00000009 + View
Salix brachista Sabra07G0049100 GWHAAZH00000007 - View
Salix brachista Sabra04G0114700 GWHAAZH00000004 + View
Simmondsia chinensis Sc07g0001010 GWHAASQ00000007 - View
Sechium edule Sed0020116 LG05 - View
Sechium edule Sed0013765 LG04 - View
Sechium edule Sed0026092 LG04 + View
Sapria himalayana SHI08522 scaffold7_18583372 + View
Solanum lycopersicum Solyc02g083800.4 Cold-shock protein (AHRD V3.3 *-* A0A200RAC1_9MAGN) SL4.0ch02 - View
Solanum lycopersicum Solyc01g111280.3 Cold-shock protein (AHRD V3.3 *-* A0A200RAC1_9MAGN) SL4.0ch01 - View
Solanum lycopersicum Solyc03g033500.4 Cold-shock protein (AHRD V3.3 *-* A0A200RAC1_9MAGN) SL4.0ch03 - View
Schrenkiella parvula Sp7g33800 K09250 - cellular nucleic acid-binding protein (CNBP) ch7-6 - View
Schrenkiella parvula Sp3g31330 K09250 - cellular nucleic acid-binding protein (CNBP) ch3-6 - View
Solanum pennellii Sopen01g053350 glycine-rich protein (AtGRP2b) | glycine-rich protein 2B (GRP2B) | FUNCTIONS IN: DNA binding, zinc ion binding, nucleic acid binding | INVOLVED IN: regulation of transcription, DNA-dependent | LOCATED IN: cellular_component unknown | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold , Cold-shock conserved site , Zinc finger, CCHC retroviral-type , Nucleic acid-binding, OB-fold-like , Cold shock protein , Zinc finger, CCHC-type , Cold-shock protein, DNA-binding | BEST Arabidopsis thaliana protein match is: glycine rich protein 2 Spenn-ch01 - View
Solanum pennellii Sopen02g028590 Encodes COLD SHOCK DOMAIN PROTEIN 3 (CSP3), involved in the acquisition of freezing tolerance. | cold shock domain protein 3 (CSP3) | FUNCTIONS IN: DNA binding, zinc ion binding, nucleic acid binding | INVOLVED IN: response to cold, DNA duplex unwinding | LOCATED IN: nucleus, cytoplasm | EXPRESSED IN: 26 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold , Cold-shock conserved site , Zinc finger, CCHC retroviral-type , Cold shock protein , Nucleic acid-binding, OB-fold-like , Zinc finger, CCHC-type , Cold-shock protein, DNA-binding | BEST Arabidopsis thaliana protein match is: cold shock domain protein 1 Spenn-ch02 - View
Solanum pennellii Sopen03g006250 Encodes a cold shock domain protein. Involved in cold acclimation by blocking the secondary structure of mRNA which in turn facilitates translation at cold temperature. | cold shock domain protein 1 (CSDP1) | CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold , Cold-shock conserved site , Zinc finger, CCHC retroviral-type , Cold shock protein , Nucleic acid-binding, OB-fold-like , Zinc finger, CCHC-type , Cold-shock protein, DNA-binding | BEST Arabidopsis thaliana protein match is: cold shock domain protein 3 Spenn-ch03 - View
Solanum tuberosum PGSC0003DMG400001591 Glycine-rich protein 2 ST4.03ch01 - View
Solanum tuberosum PGSC0003DMG400003568 Cellular nucleic acid binding protein ST4.03ch02 - View
Solanum tuberosum PGSC0003DMG400046044 Cold shock domain protein 1 ST4.03ch03 - View
Trochodendron aralioides TAR381G0031 group11 - View
Trochodendron aralioides TAR628G0853 group5 + View
Trochodendron aralioides TAR376G0860 group14 + View
Theobroma cacao Thecc.01G017400 Cold shock domain protein 1 Chromosome_1 - View
Theobroma cacao Thecc.02G063600 Chromosome_2 - View
Tarenaya hassleriana THA.LOC104807499 cold shock domain-containing protein 3 NW_010963495.1 + View
Tarenaya hassleriana THA.LOC104804265 cold shock domain-containing protein 3-like NW_010971389.1 + View
Tarenaya hassleriana THA.LOC104820188 cold shock domain-containing protein 3-like NW_010966177.1 - View
Tripterygium wilfordii TWI53G1602 NC_052244.1 - View
Tripterygium wilfordii TWI09G0064 NC_052245.1 - View
Tripterygium wilfordii TWI79G0078 NC_052238.1 - View
Vaccinium macrocarpon vmacro22139 Similar to CSP3: Cold shock domain-containing protein 3 (Arabidopsis thaliana OX%3D3702) scaffold00308_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro18410 Similar to CSP1: Cold shock protein 1 (Arabidopsis thaliana OX%3D3702) chr3_Vaccinium_macrocarpon_Stevens_v1 - View
Vitis vinifera GSVIVG01018771001 chr4 + View
Vitis vinifera GSVIVG01024055001 chr3 + View