Gene: AT2G17870
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT2G17870
- Transcript Identifier AT2G17870.1
- Gene Type Coding gene
- Location Chr2 : 7764276-7765181 : negative
Gene Family Information
- ID HOM05D001517
- #Genes/#Species 418/98
- Phylogenetic origin
- ID ORTHO05D001424
- #Genes/#Species 410/98
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT2G17870.1
- symbol CSP3
- Alias ATCSP3,ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3
- uniprot Q94C69
Descriptions
- Description cold shock domain protein 3
- Computational description cold shock domain protein 3 (CSP3); FUNCTIONS IN: DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: response to cold, DNA duplex unwinding; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Cold-shock conserved site (InterPro:IPR019844), Zinc finger, CCHC retroviral-type (InterPro:IPR013084), Cold shock protein (InterPro:IPR011129), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Zinc finger, CCHC-type (InterPro:IPR001878), Cold-shock protein, DNA-binding (InterPro:IPR002059); BEST Arabidopsis thaliana protein match is: cold shock domain protein 1 (TAIR:AT4G36020.1); Has 72472 Blast hits to 41123 proteins in 2889 species: Archae - 51; Bacteria - 27281; Metazoa - 11105; Fungi - 2852; Plants - 6181; Viruses - 14957; Other Eukaryotes - 10045 (source: NCBI BLink).
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Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009826 | IMP | Gene Ontology | unidimensional cell growth | 1 |
| GO:0032508 | IDA | Gene Ontology | DNA duplex unwinding | 2 |
| GO:0009631 | IMP | Gene Ontology | cold acclimation | 2 |
| GO:0009409 | IMP, IEP | Gene Ontology | response to cold | 2 3 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003729 | IDA, HDA | Gene Ontology | mRNA binding | 4 5 |
| GO:0008270 | IEA | Gene Ontology | zinc ion binding | |
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003723 | IEA | GOA Database | RNA binding | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0005515 | IPI | Gene Ontology | protein binding | 6 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA ISM | Gene Ontology | nucleus | 2 |
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0005737 | IDA | Gene Ontology | cytoplasm | 2 |
| GO:0005739 | HDA | Gene Ontology | mitochondrion | 7 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |