Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AL1G17510 scaffold_1 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG1G6670 LG-1 - View
Actinidia chinensis Actinidia25137 Lachesis_group20 - View
Actinidia chinensis Actinidia38840 Lachesis_group24 - View
Arabidopsis thaliana AT2G29580 CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein Encodes MAC5B%2C homologous to MAC5A. MAC5A is a component of the MOS4-associated complex (MAC) that contributes to snc1- mediated autoimmunity. Homologues include AT1G07360 (MAC5A)%2C AT2G29580 (MAC5B) and AT5G07060 (MAC5C). CCCH-type zinc fingerfamily protein with RNA-binding domain%3B FUNCTIONS IN: RNA binding%2C zinc ion binding%2C nucleotide binding%2C nucleic acid binding%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: C globular stage%2C F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C CCCH-type (InterPro:IPR000571)%2C RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: CCCH-type zinc fingerfamily protein with RNA-binding domain (TAIR:AT1G07360.1)%3B Has 12789 Blast hits to 10406 proteins in 530 species: Archae - 8%3B Bacteria - 415%3B Metazoa - 5528%3B Fungi - 2943%3B Plants - 2628%3B Viruses - 129%3B Other Eukaryotes - 1138 (source: NCBI BLink). Chr2 + View
Arabidopsis thaliana AT1G07360 CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein Encodes MAC5A%2C a component of the MOS4-associated complex (MAC) that contributes to snc1- mediated autoimmunity. MAC is a highly conserved nuclear protein complex associated with the spliceosome. Homologues include AT1G07360 (MAC5A)%2C AT2G29580 (MAC5B) and AT5G07060 (MAC5C). CCCH-type zinc fingerfamily protein with RNA-binding domain%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C CCCH-type (InterPro:IPR000571)%2C RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: CCCH-type zinc fingerfamily protein with RNA-binding domain (TAIR:AT2G29580.1)%3B Has 18250 Blast hits to 13471 proteins in 794 species: Archae - 12%3B Bacteria - 1319%3B Metazoa - 6997%3B Fungi - 3518%3B Plants - 3570%3B Viruses - 267%3B Other Eukaryotes - 2567 (source: NCBI BLink). Chr1 - View
Brassica carinata BcaB06g28319 ChrB06 + View
Brassica carinata BcaC02g08076 ChrC02 - View
Brassica carinata BcaB02g10264 ChrB02 + View
Brassica napus A04p22550 A04 + View
Brassica napus C04p58700 C04 + View
Brassica napus C08p02980 C08 - View
Brassica napus C04p21240 C04 - View
Brassica oleracea BolC8t47098H C8 - View
Brassica oleracea BolC4t27389H C4 + View
Brassica rapa BraA05t20494Z A05 - View
Brassica rapa BraA04t17800Z A04 + View
Camellia sinensis var. sinensis CSS0018492 PREDICTED: zinc finger CCCH domain-containing protein 49 [Vitis vinifera] Chr11 + View
Corylus avellana Haze_24240 Similar to Os07g0281000: Zinc finger CCCH domain-containing protein 49 (Oryza sativa subsp. japonica OX%3D39947) 6 + View
Citrus clementina Ciclev10028282m.g scaffold_8 + View
Carpinus fangiana Cfa011635 Cfa04 + View
Cardamine hirsuta CARHR122920 Zinc finger CCCH domain-containing protein Chr4 + View
Cardamine hirsuta CARHR007070 Pre-mRNA-splicing factor SLT11 Chr1 - View
Carya illinoinensis CiPaw.14G062400 K12872 - pre-mRNA-splicing factor RBM22/SLT11 (RBM22, SLT11) Chr14 - View
Carica papaya Cpa.g.sc112.65 supercontig_112 - View
Capsella rubella Carub.0001s0666 K12872 - pre-mRNA-splicing factor RBM22/SLT11 (RBM22, SLT11) scaffold_1 - View
Davidia involucrata Dinv14472 GWHABJS00000007 + View
Durio zibethinus Duzib168G1740 NW_019168159.1 + View
Eucalyptus grandis Eucgr.J01948 Chr10 - View
Eutrema salsugineum Thhalv10016591m.g K12872 - pre-mRNA-splicing factor RBM22/SLT11 (RBM22, SLT11) scaffold_10 + View
Hydrangea macrophylla Hma1.2p1_0227F.1_g096180 Hma1.2p1_0227F.1 + View
Lonicera japonica Lj2A1075T34 GWHAAZE00000002 + View
Manihot esculenta Manes.02G122600 Chromosome02 - View
Manihot esculenta Manes.01G165200 Chromosome01 - View
Populus trichocarpa Potri.009G041600 K12872 - pre-mRNA-splicing factor RBM22/SLT11 (RBM22, SLT11) Chr09 + View
Quercus lobata QL01p027360 1 - View
Rhododendron simsii Rhsim13G0073800 chr13 - View
Salix brachista Sabra09G0029100 GWHAAZH00000009 + View
Sechium edule Sed0025661 LG13 - View
Schrenkiella parvula Sp4g12310 K12872 - pre-mRNA-splicing factor RBM22/SLT11 (RBM22, SLT11) ch4-6 + View
Schrenkiella parvula Sp1g06110 K12872 - pre-mRNA-splicing factor RBM22/SLT11 (RBM22, SLT11) ch1-1 - View
Tarenaya hassleriana THA.LOC104800716 zinc finger CCCH domain-containing protein 4-like isoform X1 NW_010969548.1 + View
Tarenaya hassleriana THA.LOC104826299 zinc finger CCCH domain-containing protein 4-like NW_010967707.1 - View
Tripterygium wilfordii TWI75G0619 NC_052253.1 - View
Tripterygium wilfordii TWI31G1171 NC_052233.1 - View
Vaccinium macrocarpon vmacro02998 Similar to Os06g0170500: Zinc finger CCCH domain-containing protein 40 (Oryza sativa subsp. japonica OX%3D39947) chr9_Vaccinium_macrocarpon_Stevens_v1 - View
Vitis vinifera GSVIVG01024807001 chr6 + View