Functional clusters

Information

  • Type InterPro
  • Description Trichome birefringence-like family

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr11 5 CH_acertr_931 4 17 0.000478791
Actinidia chinensis Lachesis_group11 5 CH_ach_57 5 5 0.000000000630787
Amaranthus hybridus AmaHy_arrow1_Scaffold_1 5 CH_amhyb_24 7 8 0.0000000000000345053
Amaranthus hybridus AmaHy_arrow1_Scaffold_1 5 CH_amhyb_98 5 8 0.0000000602111
Amborella trichopoda AmTr_v1.0_scaffold00006 5 CH_atr_206 4 4 0.0000000993443
Amborella trichopoda AmTr_v1.0_scaffold00021 5 CH_atr_29 10 14 3.10574e-22
Brassica carinata ChrC05 5 CH_bca_1462 4 10 0.00013403
Brassica carinata ChrB06 5 CH_bca_1749 3 3 0.000401169
Beta vulgaris Chr4_EL10_PGA_scaffold1 5 CH_bvu_54 7 8 0.0000000000000535753
Camellia sinensis var. sinensis Chr1 5 CH_camsi_130 8 14 0.0000000000000128587
Camellia sinensis var. sinensis Chr10 5 CH_camsi_582 4 4 0.00000048127
Camellia sinensis var. sinensis Chr4 5 CH_camsi_76 11 32 2.43124e-18
Cannabis sativa NC_044379.1 5 CH_cansat_205 4 4 0.000000115317
Corylus avellana 4 5 CH_cav_685 5 57 0.000447691
Coffea canephora chr5 5 CH_ccan_55 5 15 0.00000000000757238
Ceratophyllum demersum 2 5 CH_cde_188 3 3 0.0000789359
Ceratophyllum demersum 8 5 CH_cde_189 3 3 0.0000789359
Carya illinoinensis Chr03 5 CH_cil_270 5 7 0.00000000733419
Carya illinoinensis Chr11 5 CH_cil_628 3 3 0.000142945
Carya illinoinensis Chr04 5 CH_cil_629 3 3 0.000142945
Carica papaya supercontig_19 5 CH_cpa_128 4 4 0.000000105486
Chenopodium quinoa C_Quinoa_Scaffold_1710 5 CH_cqu_1021 3 3 0.000747002
Chenopodium quinoa C_Quinoa_Scaffold_1566 5 CH_cqu_1022 3 3 0.000747002
Chenopodium quinoa C_Quinoa_Scaffold_2000 5 CH_cqu_1023 3 3 0.000747002
Chenopodium quinoa C_Quinoa_Scaffold_1279 5 CH_cqu_113 9 23 0.000000000000144284
Chenopodium quinoa C_Quinoa_Scaffold_1088 5 CH_cqu_542 4 5 0.00000953737
Chenopodium quinoa C_Quinoa_Scaffold_3498 5 CH_cqu_889 4 10 0.000396478
Daucus carota DCARv2_Chr4 5 CH_dca_484 3 3 0.000169135
Daucus carota DCARv2_Chr5 5 CH_dca_710 3 4 0.000675661
Davidia involucrata GWHABJS00000012 5 CH_din_236 5 10 0.0000000699368
Davidia involucrata GWHABJS00000013 5 CH_din_498 4 12 0.0000960492
Davidia involucrata GWHABJS00000012 5 CH_din_511 3 3 0.000135033
Durio zibethinus NW_019167926.1 5 CH_dzi_454 3 3 0.000154369
Erigeron canadensis Conyza_canadensis_scaffold:7 5 CH_eca_122 5 6 0.000000000119983
Gossypium hirsutum A05 5 CH_ghi_659 4 5 0.00000462925
Gossypium hirsutum D04 5 CH_ghi_903 4 9 0.000115965
Glycine max Gm01 5 CH_gma_146 6 7 0.0000000000387405
Gossypium raimondii Chr12 5 CH_gra_320 4 5 0.00000199539
Lupinus albus Lalb_Chr01 5 CH_lal_651 3 3 0.000365905
Lupinus albus Lalb_Chr16 5 CH_lal_652 3 3 0.000365905
Lotus japonicus chr2 5 CH_lja_300 4 5 0.00000347909
Lotus japonicus chr6 5 CH_lja_351 4 7 0.0000242684
Lotus japonicus chr3 5 CH_lja_497 3 3 0.000319576
Lotus japonicus chr2 5 CH_lja_8 13 17 8.45752e-28
Lonicera japonica GWHAAZE00000004 5 CH_lonja_227 6 6 0.00000000000227324
Lonicera japonica GWHAAZE00000001 5 CH_lonja_501 4 4 0.000000590863
Lonicera japonica GWHAAZE00000009 5 CH_lonja_997 3 3 0.000294497
Lactuca sativa Lsat_1_v8_lg_9 5 CH_lsa_167 6 9 0.0000000000174615
Lactuca sativa Lsat_1_v8_lg_8 5 CH_lsa_402 4 5 0.000000643584
Malus domestica Chr03 5 CH_mdo_260 6 11 0.000000000354255
Malus domestica Chr17 5 CH_mdo_608 4 5 0.00000165424
Malus domestica Chr09 5 CH_mdo_896 6 69 0.0000852277
Manihot esculenta Chromosome10 5 CH_mes_303 4 4 0.000000184938
Manihot esculenta Chromosome03 5 CH_mes_536 3 3 0.00012361
Medicago truncatula chr7 5 CH_mtr_1104 3 3 0.000132671
Medicago truncatula chr5 5 CH_mtr_228 6 6 0.000000000000315861
Medicago truncatula chr3 5 CH_mtr_673 4 5 0.000000898467
Nelumbo nucifera chr6 5 CH_nnu_193 4 4 0.0000000837926
Nelumbo nucifera chr3 5 CH_nnu_229 4 5 0.000000418573
Nelumbo nucifera chr4 5 CH_nnu_402 3 3 0.0000724788
Nelumbo nucifera chr2 5 CH_nnu_616 3 5 0.000723497
Nicotiana tabacum Nitab4.5_0001121 5 CH_nta_71 5 8 0.0000000398771
Oryza sativa ssp. japonica chr06 5 CH_osa_137 6 9 0.0000000000475618
Oryza sativa ssp. japonica chr06 5 CH_osa_55 8 10 5.48075e-17
Oryza sativa ssp. japonica chr03 5 CH_osa_732 3 5 0.000632171
Oryza sativa ssp. japonica chr03 5 CH_osa_733 3 4 0.000632171
Petunia axillaris Peaxi162Scf00154 5 CH_pax_271 4 5 0.00000141241
Punica granatum NC_045131.1 5 CH_pgr_237 4 4 0.000000268568
Prunus persica Pp03 5 CH_ppe_229 5 5 0.000000000356315
Prunus persica Pp04 5 CH_ppe_255 5 6 0.00000000213502
Pisum sativum chr5LG3 5 CH_psa_700 3 4 0.000530166
Papaver somniferum NW_020621047.1 5 CH_pso_12 14 16 4.01065e-31
Papaver somniferum NW_020631041.1 5 CH_pso_720 4 5 0.0000100019
Populus trichocarpa Chr10 5 CH_ptr_348 4 4 0.000000282514
Populus trichocarpa Chr04 5 CH_ptr_592 3 3 0.000171491
Phaseolus vulgaris Chr02 5 CH_pvu_163 5 5 0.0000000014146
Phaseolus vulgaris Chr04 5 CH_pvu_289 4 4 0.000000663835
Quercus lobata CM012294 5 CH_qlo_961 4 5 0.00000122819
Rosa chinensis RcHm_v2.0_Chr1 5 CH_rch_1064 3 3 0.0000901593
Rosa chinensis RcHm_v2.0_Chr5 5 CH_rch_358 6 13 0.000000000237401
Rosa chinensis RcHm_v2.0_Chr2 5 CH_rch_448 5 8 0.00000000684527
Salvia bowleyana GWHASIU00000003 5 CH_sbo_108 12 80 0.00000000000000213174
Salvia bowleyana GWHASIU00000001 5 CH_sbo_212 6 11 0.000000000759324
Salvia bowleyana GWHASIU00000001 5 CH_sbo_666 3 3 0.000285306
Salvia bowleyana GWHASIU00000001 5 CH_sbo_96 12 68 2.62396e-16
Salix brachista GWHAAZH00000011 5 CH_sbr_561 3 3 0.000193634
Simmondsia chinensis GWHAASQ00000022 5 CH_sci_10 11 11 1.76674e-26
Simmondsia chinensis GWHAASQ00000001 5 CH_sci_342 3 3 0.000188083
Sechium edule LG04 5 CH_sed_370 3 3 0.000158994
Sequoiadendron giganteum chr3 5 CH_sgi_1537 3 3 0.0000300308
Solanum lycopersicum SL4.0ch07 5 CH_sly_519 4 7 0.0000229964
Solanum pennellii Spenn-ch02 5 CH_spe_140 5 5 0.000000000174661
Solanum pennellii Spenn-ch01 5 CH_spe_602 3 3 0.000106805
Selenicereus undatus Scaffold_19641 5 CH_sun_160 3 3 0.0000518386
Trochodendron aralioides group6 5 CH_tar_571 3 3 0.0000935153
Trochodendron aralioides group7 5 CH_tar_818 3 4 0.000373671
Theobroma cacao Chromosome_7 5 CH_tca_314 4 4 0.000000160005
Theobroma cacao Chromosome_10 5 CH_tca_559 3 3 0.000106563
Trifolium pratense Tp57577_TGAC_v2_LG2 5 CH_tpr_247 4 4 0.000000552148
Tripterygium wilfordii NC_052245.1 5 CH_twi_373 5 38 0.000110687
Vaccinium macrocarpon chr6_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_254 4 4 0.00000060163
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_551 3 3 0.000269743
Vigna mungo CM024077.1 5 CH_vmu_219 4 5 0.00000137833
Vigna mungo CM024074.1 5 CH_vmu_401 3 3 0.000164301
Vitis vinifera chr19 5 CH_vvi_166 5 5 0.000000000213606
Acer truncatum chr11 6 CH_acertr_931 4 17 0.000478791
Actinidia chinensis Lachesis_group11 6 CH_ach_57 5 5 0.000000000630787
Amaranthus hybridus AmaHy_arrow1_Scaffold_1 6 CH_amhyb_24 7 8 0.0000000000000345053
Amaranthus hybridus AmaHy_arrow1_Scaffold_1 6 CH_amhyb_98 5 8 0.0000000602111
Amborella trichopoda AmTr_v1.0_scaffold00006 6 CH_atr_206 4 4 0.0000000993443
Amborella trichopoda AmTr_v1.0_scaffold00021 6 CH_atr_29 10 14 3.10574e-22
Brassica carinata ChrC05 6 CH_bca_1462 4 10 0.00013403
Brassica carinata ChrB06 6 CH_bca_1749 3 3 0.000401169
Beta vulgaris Chr4_EL10_PGA_scaffold1 6 CH_bvu_54 7 8 0.0000000000000535753
Camellia sinensis var. sinensis Chr1 6 CH_camsi_130 8 14 0.0000000000000128587
Camellia sinensis var. sinensis Chr10 6 CH_camsi_582 4 4 0.00000048127
Camellia sinensis var. sinensis Chr4 6 CH_camsi_76 11 32 2.43124e-18
Cannabis sativa NC_044379.1 6 CH_cansat_205 4 4 0.000000115317
Corylus avellana 4 6 CH_cav_685 5 57 0.000447691
Coffea canephora chr5 6 CH_ccan_55 5 15 0.00000000000757238
Ceratophyllum demersum 2 6 CH_cde_188 3 3 0.0000789359
Ceratophyllum demersum 8 6 CH_cde_189 3 3 0.0000789359
Carya illinoinensis Chr03 6 CH_cil_270 5 7 0.00000000733419
Carya illinoinensis Chr11 6 CH_cil_628 3 3 0.000142945
Carya illinoinensis Chr04 6 CH_cil_629 3 3 0.000142945
Carica papaya supercontig_19 6 CH_cpa_128 4 4 0.000000105486
Chenopodium quinoa C_Quinoa_Scaffold_1710 6 CH_cqu_1021 3 3 0.000747002
Chenopodium quinoa C_Quinoa_Scaffold_1566 6 CH_cqu_1022 3 3 0.000747002
Chenopodium quinoa C_Quinoa_Scaffold_2000 6 CH_cqu_1023 3 3 0.000747002
Chenopodium quinoa C_Quinoa_Scaffold_1279 6 CH_cqu_113 9 23 0.000000000000144284
Chenopodium quinoa C_Quinoa_Scaffold_1088 6 CH_cqu_542 4 5 0.00000953737
Chenopodium quinoa C_Quinoa_Scaffold_3498 6 CH_cqu_889 4 10 0.000396478
Daucus carota DCARv2_Chr4 6 CH_dca_484 3 3 0.000169135
Daucus carota DCARv2_Chr5 6 CH_dca_710 3 4 0.000675661
Davidia involucrata GWHABJS00000012 6 CH_din_236 5 10 0.0000000699368
Davidia involucrata GWHABJS00000013 6 CH_din_498 4 12 0.0000960492
Davidia involucrata GWHABJS00000012 6 CH_din_511 3 3 0.000135033
Durio zibethinus NW_019167926.1 6 CH_dzi_454 3 3 0.000154369
Erigeron canadensis Conyza_canadensis_scaffold:7 6 CH_eca_122 5 6 0.000000000119983
Fragaria x ananassa Fvb3-1 6 CH_fan_194 5 5 0.000000000485951
Fragaria x ananassa Fvb3-3 6 CH_fan_388 4 4 0.000000364747
Gossypium hirsutum A05 6 CH_ghi_659 4 5 0.00000462925
Gossypium hirsutum D04 6 CH_ghi_903 4 9 0.000115965
Glycine max Gm01 6 CH_gma_146 6 7 0.0000000000387405
Gossypium raimondii Chr12 6 CH_gra_320 4 5 0.00000199539
Lupinus albus Lalb_Chr01 6 CH_lal_651 3 3 0.000365905
Lupinus albus Lalb_Chr16 6 CH_lal_652 3 3 0.000365905
Lotus japonicus chr2 6 CH_lja_300 4 5 0.00000347909
Lotus japonicus chr6 6 CH_lja_351 4 7 0.0000242684
Lotus japonicus chr3 6 CH_lja_497 3 3 0.000319576
Lotus japonicus chr2 6 CH_lja_8 13 17 8.45752e-28
Lonicera japonica GWHAAZE00000004 6 CH_lonja_227 6 6 0.00000000000227324
Lonicera japonica GWHAAZE00000001 6 CH_lonja_501 4 4 0.000000590863
Lonicera japonica GWHAAZE00000009 6 CH_lonja_997 3 3 0.000294497
Lactuca sativa Lsat_1_v8_lg_9 6 CH_lsa_167 6 9 0.0000000000174615
Lactuca sativa Lsat_1_v8_lg_8 6 CH_lsa_402 4 5 0.000000643584
Malus domestica Chr03 6 CH_mdo_260 6 11 0.000000000354255
Malus domestica Chr17 6 CH_mdo_608 4 5 0.00000165424
Malus domestica Chr09 6 CH_mdo_896 6 69 0.0000852277
Manihot esculenta Chromosome10 6 CH_mes_303 4 4 0.000000184938
Manihot esculenta Chromosome03 6 CH_mes_536 3 3 0.00012361
Medicago truncatula chr7 6 CH_mtr_1104 3 3 0.000132671
Medicago truncatula chr5 6 CH_mtr_228 6 6 0.000000000000315861
Medicago truncatula chr3 6 CH_mtr_673 4 5 0.000000898467
Nelumbo nucifera chr6 6 CH_nnu_193 4 4 0.0000000837926
Nelumbo nucifera chr3 6 CH_nnu_229 4 5 0.000000418573
Nelumbo nucifera chr4 6 CH_nnu_402 3 3 0.0000724788
Nelumbo nucifera chr2 6 CH_nnu_616 3 5 0.000723497
Nicotiana tabacum Nitab4.5_0001121 6 CH_nta_71 5 8 0.0000000398771
Oryza sativa ssp. japonica chr06 6 CH_osa_137 6 9 0.0000000000475618
Oryza sativa ssp. japonica chr06 6 CH_osa_55 8 10 5.48075e-17
Oryza sativa ssp. japonica chr03 6 CH_osa_732 3 5 0.000632171
Oryza sativa ssp. japonica chr03 6 CH_osa_733 3 4 0.000632171
Petunia axillaris Peaxi162Scf00154 6 CH_pax_271 4 5 0.00000141241
Punica granatum NC_045131.1 6 CH_pgr_237 4 4 0.000000268568
Prunus persica Pp03 6 CH_ppe_229 5 5 0.000000000356315
Prunus persica Pp04 6 CH_ppe_255 5 6 0.00000000213502
Pisum sativum chr5LG3 6 CH_psa_700 3 4 0.000530166
Papaver somniferum NW_020621047.1 6 CH_pso_12 14 16 4.01065e-31
Papaver somniferum NW_020631041.1 6 CH_pso_720 4 5 0.0000100019
Populus trichocarpa Chr10 6 CH_ptr_348 4 4 0.000000282514
Populus trichocarpa Chr04 6 CH_ptr_592 3 3 0.000171491
Phaseolus vulgaris Chr02 6 CH_pvu_163 5 5 0.0000000014146
Phaseolus vulgaris Chr04 6 CH_pvu_289 4 4 0.000000663835
Quercus lobata CM012294 6 CH_qlo_961 4 5 0.00000122819
Rosa chinensis RcHm_v2.0_Chr1 6 CH_rch_1064 3 3 0.0000901593
Rosa chinensis RcHm_v2.0_Chr5 6 CH_rch_358 6 13 0.000000000237401
Rosa chinensis RcHm_v2.0_Chr2 6 CH_rch_448 5 8 0.00000000684527
Salvia bowleyana GWHASIU00000003 6 CH_sbo_108 12 80 0.00000000000000213174
Salvia bowleyana GWHASIU00000001 6 CH_sbo_212 6 11 0.000000000759324
Salvia bowleyana GWHASIU00000001 6 CH_sbo_666 3 3 0.000285306
Salvia bowleyana GWHASIU00000001 6 CH_sbo_96 12 68 2.62396e-16
Salix brachista GWHAAZH00000011 6 CH_sbr_561 3 3 0.000193634
Simmondsia chinensis GWHAASQ00000022 6 CH_sci_10 11 11 1.76674e-26
Simmondsia chinensis GWHAASQ00000001 6 CH_sci_342 3 3 0.000188083
Sechium edule LG04 6 CH_sed_370 3 3 0.000158994
Sequoiadendron giganteum chr3 6 CH_sgi_1537 3 3 0.0000300308
Solanum lycopersicum SL4.0ch07 6 CH_sly_519 4 7 0.0000229964
Solanum pennellii Spenn-ch02 6 CH_spe_140 5 5 0.000000000174661
Solanum pennellii Spenn-ch01 6 CH_spe_602 3 3 0.000106805
Selenicereus undatus Scaffold_19641 6 CH_sun_160 3 3 0.0000518386
Trochodendron aralioides group6 6 CH_tar_571 3 3 0.0000935153
Trochodendron aralioides group7 6 CH_tar_818 3 4 0.000373671
Theobroma cacao Chromosome_7 6 CH_tca_314 4 4 0.000000160005
Theobroma cacao Chromosome_10 6 CH_tca_559 3 3 0.000106563
Trifolium pratense Tp57577_TGAC_v2_LG2 6 CH_tpr_247 4 4 0.000000552148
Tripterygium wilfordii NC_052245.1 6 CH_twi_373 5 38 0.000110687
Vaccinium macrocarpon chr6_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_254 4 4 0.00000060163
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_551 3 3 0.000269743
Vigna mungo CM024077.1 6 CH_vmu_219 4 5 0.00000137833
Vigna mungo CM024074.1 6 CH_vmu_401 3 3 0.000164301
Vitis vinifera chr19 6 CH_vvi_166 5 5 0.000000000213606

Available child term results

Ontology identifier Description Number of clusters
IPR029963 Protein altered xyloglucan 4 10
IPR029964 Protein trichome berefringence-like 7 2
IPR029965 Protein trichome birefringence-like 6 6
IPR029967 Protein trichome birefringence-like 2 10
IPR029968 Protein trichome birefringence-like 13 14
IPR029970 Protein trichome birefringence-like 5 8
IPR029971 Protein trichome birefringence-like 34 2
IPR029972 Protein trichome birefringence-like 3 4
IPR029975 Altered xyloglucan 4-like 2
IPR029977 Protein trichome birefringence-like 8-9 4
IPR029979 Protein ESKIMO 1 2
IPR029981 PMR5 4
IPR029985 Protein trichome birefringence-like 25/26 2
IPR029986 Protein trichome birefringence-like 37/38 10
IPR029988 Protein trichome birefringence-like 32/46 2
IPR029989 Trichome birefringence/trichome birefringence-like 4 8

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001