Functional clusters

Information

  • Type InterPro
  • Description Transcription factor, MADS-box

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-5 5 CH_aar_190 4 4 0.0000018555
Aethionema arabicum LG-11 5 CH_aar_414 3 3 0.00062573
Acer truncatum chr1 5 CH_acertr_961 3 3 0.000636061
Aquilegia oxysepala CHR07 5 CH_aox_451 3 3 0.000297704
Amborella trichopoda AmTr_v1.0_scaffold00159 5 CH_atr_350 3 3 0.0000566483
Brassica carinata ChrB06 5 CH_bca_1851 4 8 0.000531569
Brassica carinata ChrB07 5 CH_bca_557 5 6 0.000000136843
Brassica napus A02 5 CH_bna_1323 6 42 0.000391598
Brassica napus C02 5 CH_bna_1413 4 8 0.000629786
Brassica oleracea C6 5 CH_bol_279 7 32 0.000000268788
Brassica oleracea C2 5 CH_bol_918 6 57 0.000986947
Brassica rapa A02 5 CH_bra_496 6 40 0.000348341
Camellia sinensis var. sinensis Chr15 5 CH_camsi_257 6 7 0.0000000000609902
Camellia sinensis var. sinensis Chr3 5 CH_camsi_866 5 17 0.0000223346
Camellia sinensis var. sinensis Chr2 5 CH_camsi_95 11 36 3.15694e-16
Capsicum annuum PGAv.1.6.scaffold1038 5 CH_can_280 5 5 0.0000000427623
Capsicum annuum PGAv.1.6.scaffold1058 5 CH_can_359 5 7 0.000000891454
Capsicum annuum PGAv.1.6.scaffold730 5 CH_can_42 14 27 3.12699e-22
Capsicum annuum PGAv.1.6.scaffold134 5 CH_can_621 4 6 0.000145447
Capsicum annuum PGAv.1.6.scaffold866 5 CH_can_736 4 7 0.000338173
Capsicum annuum PGAv.1.6.scaffold504 5 CH_can_99 9 13 0.0000000000000100655
Cicer arietinum L. Ca_LG4_v3 5 CH_car_13 6 6 0.000000000000898908
Coffea canephora chr2 5 CH_ccan_247 3 4 0.00000285491
Citrus clementina scaffold_9 5 CH_ccl_9 22 31 2.36335e-45
Cardamine hirsuta Chr7 5 CH_chi_420 4 5 0.0000201719
Cardamine hirsuta Chr4 5 CH_chi_734 5 23 0.000433925
Carya illinoinensis Chr04 5 CH_cil_240 6 10 0.00000000128904
Carya illinoinensis Chr04 5 CH_cil_627 4 9 0.000141018
Carica papaya supercontig_117 5 CH_cpa_130 5 7 0.000000123652
Carica papaya supercontig_106 5 CH_cpa_204 4 4 0.00000197588
Chenopodium quinoa C_Quinoa_Scaffold_2587 5 CH_cqu_521 4 5 0.00000624578
Chenopodium quinoa C_Quinoa_Scaffold_2187 5 CH_cqu_587 4 6 0.0000187028
Chenopodium quinoa C_Quinoa_Scaffold_2314 5 CH_cqu_956 3 3 0.000544554
Capsella rubella scaffold_2 5 CH_cru_50 9 9 1.64439e-17
Capsella rubella scaffold_4 5 CH_cru_631 6 40 0.000709893
Erigeron canadensis Conyza_canadensis_scaffold:6 5 CH_eca_601 3 3 0.000131929
Erigeron canadensis Conyza_canadensis_scaffold:8 5 CH_eca_602 3 3 0.000131929
Erigeron canadensis Conyza_canadensis_scaffold:7 5 CH_eca_603 3 3 0.000131929
Eucalyptus grandis Chr09 5 CH_egr_1135 4 8 0.000127306
Eucalyptus grandis Chr11 5 CH_egr_61 15 18 3.33682e-32
Eucalyptus grandis Chr05 5 CH_egr_622 8 45 0.0000000163583
Erythranthe guttata scaffold_4 5 CH_egut_116 7 7 0.000000000000111254
Erythranthe guttata scaffold_2 5 CH_egut_368 4 4 0.00000338196
Eutrema salsugineum scaffold_4 5 CH_esa_306 4 5 0.0000472689
Gossypium hirsutum D06 5 CH_ghi_128 9 11 6.9434e-17
Gossypium hirsutum D04 5 CH_ghi_376 6 9 0.00000000429029
Glycine max Gm10 5 CH_gma_125 7 10 0.00000000000586682
Gossypium raimondii Chr12 5 CH_gra_272 5 7 0.000000356144
Gossypium raimondii Chr10 5 CH_gra_40 11 12 2.43629e-22
Hydrangea macrophylla Hma1.2p1_0661F.1 5 CH_hma_135 4 4 0.000000129421
Hydrangea macrophylla Hma1.2p1_0010F.1 5 CH_hma_238 4 10 0.0000269743
Lupinus albus Lalb_Chr18 5 CH_lal_335 8 72 0.00000756645
Lupinus albus Lalb_Chr18 5 CH_lal_58 9 17 0.0000000000000605633
Lupinus albus Lalb_Chr15 5 CH_lal_96 6 6 0.000000000067315
Lotus japonicus chr6 5 CH_lja_158 5 6 0.0000000577216
Lonicera japonica GWHAAZE00000009 5 CH_lonja_638 3 3 0.0000139878
Lactuca sativa Lsat_1_v8_lg_1 5 CH_lsa_572 4 7 0.0000301273
Lactuca sativa Lsat_1_v8_lg_4 5 CH_lsa_622 4 8 0.0000601515
Malus domestica Chr01 5 CH_mdo_696 5 15 0.00000671986
Manihot esculenta Chromosome05 5 CH_mes_698 3 3 0.000613778
Manihot esculenta Chromosome15 5 CH_mes_699 3 3 0.000613778
Medicago truncatula chr1 5 CH_mtr_759 4 4 0.00000309872
Nelumbo nucifera chr2 5 CH_nnu_100 5 5 0.000000000202161
Nelumbo nucifera chr1 5 CH_nnu_164 5 9 0.0000000253596
Nicotiana tabacum Nitab4.5_0000047 5 CH_nta_105 5 9 0.000000472266
Olea europaea chr8 5 CH_oeu_176 4 4 0.00000058544
Olea europaea chr22 5 CH_oeu_511 3 3 0.000300467
Petunia axillaris Peaxi162Scf00611 5 CH_pax_110 6 7 0.000000000435776
Petunia axillaris Peaxi162Scf00016 5 CH_pax_302 4 4 0.00000499474
Petunia axillaris Peaxi162Scf00104 5 CH_pax_321 5 11 0.00000805469
Punica granatum NC_045128.1 5 CH_pgr_120 9 33 0.0000000000900121
Prunus persica Pp01 5 CH_ppe_210 6 7 0.000000000109101
Pisum sativum chr7LG7 5 CH_psa_662 3 3 0.000479512
Papaver somniferum NW_020641039.1 5 CH_pso_1167 3 3 0.00051974
Papaver somniferum NW_020647637.1 5 CH_pso_232 6 7 0.0000000000200961
Papaver somniferum NC_039368.1 5 CH_pso_405 6 16 0.0000000226798
Papaver somniferum NC_039360.1 5 CH_pso_442 8 67 0.0000000518623
Papaver somniferum NW_020653081.1 5 CH_pso_797 6 46 0.0000253546
Phaseolus vulgaris Chr04 5 CH_pvu_92 8 13 0.000000000000120903
Quercus lobata 11 5 CH_qlo_1337 4 10 0.0000835373
Quercus lobata 5 5 CH_qlo_1522 3 3 0.00022853
Rhododendron simsii chr11 5 CH_rsi_533 4 5 0.00000413983
Sechium edule LG09 5 CH_sed_137 5 7 0.0000000491967
Sequoiadendron giganteum chr2 5 CH_sgi_1926 3 3 0.0000933922
Sequoiadendron giganteum chr2 5 CH_sgi_1927 3 3 0.0000933922
Sequoiadendron giganteum chr1 5 CH_sgi_219 9 13 2.03699e-19
Sequoiadendron giganteum chr11 5 CH_sgi_2643 3 5 0.000932103
Sequoiadendron giganteum chr2 5 CH_sgi_318 8 14 7.45609e-16
Solanum lycopersicum SL4.0ch01 5 CH_sly_431 4 4 0.00000325112
Solanum lycopersicum SL4.0ch12 5 CH_sly_432 4 4 0.00000325112
Solanum lycopersicum SL4.0ch04 5 CH_sly_513 5 14 0.000019416
Solanum lycopersicum SL4.0ch03 5 CH_sly_657 4 7 0.000112948
Solanum pennellii Spenn-ch01 5 CH_spe_508 4 6 0.0000282412
Solanum pennellii Spenn-ch12 5 CH_spe_756 4 10 0.000392201
Solanum tuberosum ST4.03ch01 5 CH_stu_137 8 11 0.000000000000311601
Solanum tuberosum ST4.03ch12 5 CH_stu_805 4 7 0.000315471
Trochodendron aralioides group17 5 CH_tar_152 7 24 0.00000000270533
Theobroma cacao Chromosome_5 5 CH_tca_369 4 4 0.000000849485
Theobroma cacao Chromosome_2 5 CH_tca_660 3 3 0.000368191
Tarenaya hassleriana NW_010966274.1 5 CH_tha_171 4 5 0.0000191913
Trifolium pratense Tp57577_TGAC_v2_LG3 5 CH_tpr_380 4 5 0.0000113539
Tripterygium wilfordii NC_052249.1 5 CH_twi_512 3 3 0.000585496
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_222 4 4 0.00000022002
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_665 3 4 0.000511213
Vigna mungo CM024069.1 5 CH_vmu_620 3 4 0.000900278
Vitis vinifera chr3 5 CH_vvi_257 5 8 0.0000000442587
Zea mays 9 5 CH_zma_325 4 8 0.0000487865
Aethionema arabicum LG-5 6 CH_aar_190 4 4 0.0000018555
Aethionema arabicum LG-11 6 CH_aar_414 3 3 0.00062573
Acer truncatum chr1 6 CH_acertr_961 3 3 0.000636061
Aquilegia oxysepala CHR07 6 CH_aox_451 3 3 0.000297704
Amborella trichopoda AmTr_v1.0_scaffold00159 6 CH_atr_350 3 3 0.0000566483
Brassica carinata ChrB06 6 CH_bca_1851 4 8 0.000531569
Brassica carinata ChrB07 6 CH_bca_557 5 6 0.000000136843
Brassica napus A02 6 CH_bna_1323 6 42 0.000391598
Brassica napus C02 6 CH_bna_1413 4 8 0.000629786
Brassica oleracea C6 6 CH_bol_279 7 32 0.000000268788
Brassica oleracea C2 6 CH_bol_918 6 57 0.000986947
Brassica rapa A02 6 CH_bra_496 6 40 0.000348341
Camellia sinensis var. sinensis Chr15 6 CH_camsi_257 6 7 0.0000000000609902
Camellia sinensis var. sinensis Chr3 6 CH_camsi_866 5 17 0.0000223346
Camellia sinensis var. sinensis Chr2 6 CH_camsi_95 11 36 3.15694e-16
Capsicum annuum PGAv.1.6.scaffold1038 6 CH_can_280 5 5 0.0000000427623
Capsicum annuum PGAv.1.6.scaffold1058 6 CH_can_359 5 7 0.000000891454
Capsicum annuum PGAv.1.6.scaffold730 6 CH_can_42 14 27 3.12699e-22
Capsicum annuum PGAv.1.6.scaffold134 6 CH_can_621 4 6 0.000145447
Capsicum annuum PGAv.1.6.scaffold866 6 CH_can_736 4 7 0.000338173
Capsicum annuum PGAv.1.6.scaffold504 6 CH_can_99 9 13 0.0000000000000100655
Cicer arietinum L. Ca_LG4_v3 6 CH_car_13 6 6 0.000000000000898908
Coffea canephora chr2 6 CH_ccan_247 3 4 0.00000285491
Citrus clementina scaffold_9 6 CH_ccl_9 22 31 2.36335e-45
Cardamine hirsuta Chr7 6 CH_chi_420 4 5 0.0000201719
Cardamine hirsuta Chr4 6 CH_chi_734 5 23 0.000433925
Carya illinoinensis Chr04 6 CH_cil_240 6 10 0.00000000128904
Carya illinoinensis Chr04 6 CH_cil_627 4 9 0.000141018
Carica papaya supercontig_117 6 CH_cpa_130 5 7 0.000000123652
Carica papaya supercontig_106 6 CH_cpa_204 4 4 0.00000197588
Chenopodium quinoa C_Quinoa_Scaffold_2587 6 CH_cqu_521 4 5 0.00000624578
Chenopodium quinoa C_Quinoa_Scaffold_2187 6 CH_cqu_587 4 6 0.0000187028
Chenopodium quinoa C_Quinoa_Scaffold_2314 6 CH_cqu_956 3 3 0.000544554
Capsella rubella scaffold_2 6 CH_cru_50 9 9 1.64439e-17
Capsella rubella scaffold_4 6 CH_cru_631 6 40 0.000709893
Erigeron canadensis Conyza_canadensis_scaffold:6 6 CH_eca_601 3 3 0.000131929
Erigeron canadensis Conyza_canadensis_scaffold:8 6 CH_eca_602 3 3 0.000131929
Erigeron canadensis Conyza_canadensis_scaffold:7 6 CH_eca_603 3 3 0.000131929
Eucalyptus grandis Chr09 6 CH_egr_1135 4 8 0.000127306
Eucalyptus grandis Chr11 6 CH_egr_61 15 18 3.33682e-32
Eucalyptus grandis Chr05 6 CH_egr_622 8 45 0.0000000163583
Erythranthe guttata scaffold_4 6 CH_egut_116 7 7 0.000000000000111254
Erythranthe guttata scaffold_2 6 CH_egut_368 4 4 0.00000338196
Eutrema salsugineum scaffold_4 6 CH_esa_306 4 5 0.0000472689
Gossypium hirsutum D06 6 CH_ghi_128 9 11 6.9434e-17
Gossypium hirsutum D04 6 CH_ghi_376 6 9 0.00000000429029
Glycine max Gm10 6 CH_gma_125 7 10 0.00000000000586682
Gossypium raimondii Chr12 6 CH_gra_272 5 7 0.000000356144
Gossypium raimondii Chr10 6 CH_gra_40 11 12 2.43629e-22
Hydrangea macrophylla Hma1.2p1_0661F.1 6 CH_hma_135 4 4 0.000000129421
Hydrangea macrophylla Hma1.2p1_0010F.1 6 CH_hma_238 4 10 0.0000269743
Lupinus albus Lalb_Chr18 6 CH_lal_335 8 72 0.00000756645
Lupinus albus Lalb_Chr18 6 CH_lal_58 9 17 0.0000000000000605633
Lupinus albus Lalb_Chr15 6 CH_lal_96 6 6 0.000000000067315
Lotus japonicus chr6 6 CH_lja_158 5 6 0.0000000577216
Lonicera japonica GWHAAZE00000009 6 CH_lonja_638 3 3 0.0000139878
Lactuca sativa Lsat_1_v8_lg_1 6 CH_lsa_572 4 7 0.0000301273
Lactuca sativa Lsat_1_v8_lg_4 6 CH_lsa_622 4 8 0.0000601515
Malus domestica Chr01 6 CH_mdo_696 5 15 0.00000671986
Manihot esculenta Chromosome05 6 CH_mes_698 3 3 0.000613778
Manihot esculenta Chromosome15 6 CH_mes_699 3 3 0.000613778
Medicago truncatula chr1 6 CH_mtr_759 4 4 0.00000309872
Nelumbo nucifera chr2 6 CH_nnu_100 5 5 0.000000000202161
Nelumbo nucifera chr1 6 CH_nnu_164 5 9 0.0000000253596
Nicotiana tabacum Nitab4.5_0000047 6 CH_nta_105 5 9 0.000000472266
Olea europaea chr8 6 CH_oeu_176 4 4 0.00000058544
Olea europaea chr22 6 CH_oeu_511 3 3 0.000300467
Petunia axillaris Peaxi162Scf00611 6 CH_pax_110 6 7 0.000000000435776
Petunia axillaris Peaxi162Scf00016 6 CH_pax_302 4 4 0.00000499474
Petunia axillaris Peaxi162Scf00104 6 CH_pax_321 5 11 0.00000805469
Punica granatum NC_045128.1 6 CH_pgr_120 9 33 0.0000000000900121
Prunus persica Pp01 6 CH_ppe_210 6 7 0.000000000109101
Pisum sativum chr7LG7 6 CH_psa_662 3 3 0.000479512
Papaver somniferum NW_020641039.1 6 CH_pso_1167 3 3 0.00051974
Papaver somniferum NW_020647637.1 6 CH_pso_232 6 7 0.0000000000200961
Papaver somniferum NC_039368.1 6 CH_pso_405 6 16 0.0000000226798
Papaver somniferum NC_039360.1 6 CH_pso_442 8 67 0.0000000518623
Papaver somniferum NW_020653081.1 6 CH_pso_797 6 46 0.0000253546
Phaseolus vulgaris Chr04 6 CH_pvu_92 8 13 0.000000000000120903
Quercus lobata 11 6 CH_qlo_1337 4 10 0.0000835373
Quercus lobata 5 6 CH_qlo_1522 3 3 0.00022853
Rhododendron simsii chr11 6 CH_rsi_533 4 5 0.00000413983
Sechium edule LG09 6 CH_sed_137 5 7 0.0000000491967
Sequoiadendron giganteum chr2 6 CH_sgi_1926 3 3 0.0000933922
Sequoiadendron giganteum chr2 6 CH_sgi_1927 3 3 0.0000933922
Sequoiadendron giganteum chr1 6 CH_sgi_219 9 13 2.03699e-19
Sequoiadendron giganteum chr11 6 CH_sgi_2643 3 5 0.000932103
Sequoiadendron giganteum chr2 6 CH_sgi_318 8 14 7.45609e-16
Solanum lycopersicum SL4.0ch01 6 CH_sly_431 4 4 0.00000325112
Solanum lycopersicum SL4.0ch12 6 CH_sly_432 4 4 0.00000325112
Solanum lycopersicum SL4.0ch04 6 CH_sly_513 5 14 0.000019416
Solanum lycopersicum SL4.0ch03 6 CH_sly_657 4 7 0.000112948
Solanum pennellii Spenn-ch01 6 CH_spe_508 4 6 0.0000282412
Solanum pennellii Spenn-ch12 6 CH_spe_756 4 10 0.000392201
Solanum tuberosum ST4.03ch01 6 CH_stu_137 8 11 0.000000000000311601
Solanum tuberosum ST4.03ch12 6 CH_stu_805 4 7 0.000315471
Trochodendron aralioides group17 6 CH_tar_152 7 24 0.00000000270533
Theobroma cacao Chromosome_5 6 CH_tca_369 4 4 0.000000849485
Theobroma cacao Chromosome_2 6 CH_tca_660 3 3 0.000368191
Tarenaya hassleriana NW_010966274.1 6 CH_tha_171 4 5 0.0000191913
Trifolium pratense Tp57577_TGAC_v2_LG3 6 CH_tpr_380 4 5 0.0000113539
Tripterygium wilfordii NC_052249.1 6 CH_twi_512 3 3 0.000585496
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_222 4 4 0.00000022002
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_665 3 4 0.000511213
Vigna mungo CM024069.1 6 CH_vmu_620 3 4 0.000900278
Vitis vinifera chr3 6 CH_vvi_257 5 8 0.0000000442587
Zea mays 9 6 CH_zma_325 4 8 0.0000487865

Available child term results

Ontology identifier Description Number of clusters
IPR033896 MADS MEF2-like 46
IPR033897 MADS SRF-like 104

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001