Functional clusters
Information
- Type InterPro
- Description MADS SRF-like
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-11 | 5 | CH_aar_103 | 5 | 9 | 0.0000000013291 |
| Aquilegia oxysepala | CHR02 | 5 | CH_aox_117 | 4 | 6 | 0.0000000165879 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.01 | 5 | CH_arhy_548 | 3 | 3 | 0.00000038452 |
| Arabidopsis thaliana | Chr5 | 5 | CH_ath_263 | 6 | 72 | 0.000000614743 |
| Brassica carinata | ChrB04 | 5 | CH_bca_1835 | 4 | 28 | 0.000482145 |
| Brassica carinata | ChrC06 | 5 | CH_bca_612 | 5 | 20 | 0.00000025095 |
| Brassica napus | A01 | 5 | CH_bna_948 | 3 | 3 | 0.0000363316 |
| Brassica oleracea | C9 | 5 | CH_bol_222 | 6 | 46 | 0.0000000404042 |
| Brassica rapa | A01 | 5 | CH_bra_315 | 3 | 3 | 0.0000273153 |
| Cannabis sativa | NC_044370.1 | 5 | CH_cansat_227 | 4 | 8 | 0.000000287577 |
| Cannabis sativa | NC_044372.1 | 5 | CH_cansat_363 | 4 | 23 | 0.000036132 |
| Cicer arietinum L. | Ca_LG5_v3 | 5 | CH_car_22 | 5 | 7 | 0.00000000000457579 |
| Ceratophyllum demersum | 3 | 5 | CH_cde_94 | 3 | 3 | 0.000000327496 |
| Carya illinoinensis | Chr14 | 5 | CH_cil_204 | 4 | 4 | 0.0000000000900215 |
| Corchorus olitorius | AWUE01018132.1 | 5 | CH_col_128 | 2 | 2 | 0.000292099 |
| Carica papaya | supercontig_30 | 5 | CH_cpa_269 | 3 | 4 | 0.0000617794 |
| Carica papaya | supercontig_173 | 5 | CH_cpa_91 | 5 | 13 | 0.0000000121641 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4480 | 5 | CH_cqu_77 | 6 | 7 | 3.01219e-16 |
| Capsella rubella | scaffold_4 | 5 | CH_cru_481 | 3 | 3 | 0.000113791 |
| Daucus carota | DCARv2_Chr2 | 5 | CH_dca_44 | 5 | 5 | 0.0000000000000156382 |
| Eucalyptus grandis | Chr05 | 5 | CH_egr_524 | 4 | 4 | 0.000000000821052 |
| Eucalyptus grandis | Chr08 | 5 | CH_egr_945 | 3 | 4 | 0.00000934905 |
| Eutrema salsugineum | scaffold_9 | 5 | CH_esa_101 | 9 | 75 | 0.000000000104959 |
| Gossypium hirsutum | D13 | 5 | CH_ghi_385 | 4 | 4 | 0.00000000639286 |
| Gossypium hirsutum | A09 | 5 | CH_ghi_807 | 3 | 4 | 0.0000490904 |
| Glycine max | Gm18 | 5 | CH_gma_119 | 5 | 7 | 0.00000000000379957 |
| Gossypium raimondii | Chr13 | 5 | CH_gra_239 | 4 | 5 | 0.0000000633076 |
| Helianthus annuus | HanXRQChr15 | 5 | CH_han_149 | 5 | 6 | 0.000000000000200878 |
| Lupinus albus | Lalb_Chr20 | 5 | CH_lal_4 | 14 | 15 | 2.23747e-38 |
| Lotus japonicus | chr4 | 5 | CH_lja_3 | 12 | 12 | 3.0463e-34 |
| Lonicera japonica | GWHAAZE00000001 | 5 | CH_lonja_295 | 4 | 4 | 0.000000000318986 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 5 | CH_lsa_469 | 3 | 4 | 0.0000033281 |
| Magnolia biondii | Chr10 | 5 | CH_mbi_301 | 5 | 33 | 0.00000000780776 |
| Magnolia biondii | Chr16 | 5 | CH_mbi_457 | 4 | 16 | 0.000000308953 |
| Malus domestica | Chr12 | 5 | CH_mdo_562 | 3 | 3 | 0.000000785171 |
| Punica granatum | NC_045133.1 | 5 | CH_pgr_231 | 5 | 40 | 0.000000199372 |
| Prunus persica | Pp07 | 5 | CH_ppe_446 | 3 | 3 | 0.00000379798 |
| Prunus persica | Pp01 | 5 | CH_ppe_508 | 3 | 4 | 0.0000151863 |
| Pisum sativum | chr5LG3 | 5 | CH_psa_55 | 9 | 75 | 0.00000000000000207446 |
| Phaseolus vulgaris | Chr06 | 5 | CH_pvu_104 | 5 | 7 | 0.00000000000211997 |
| Salvia bowleyana | GWHASIU00000002 | 5 | CH_sbo_442 | 3 | 8 | 0.0000208519 |
| Simmondsia chinensis | GWHAASQ00000017 | 5 | CH_sci_219 | 3 | 6 | 0.00000760816 |
| Sapria himalayana | scaffold1_25991295 | 5 | CH_shi_571 | 2 | 2 | 0.000857706 |
| Schrenkiella parvula | ch3-1 | 5 | CH_spa_202 | 3 | 3 | 0.0000304633 |
| Solanum pennellii | Spenn-ch01 | 5 | CH_spe_344 | 3 | 3 | 0.000000848746 |
| Solanum tuberosum | ST4.03ch05 | 5 | CH_stu_356 | 4 | 9 | 0.000000155428 |
| Solanum tuberosum | ST4.03ch05 | 5 | CH_stu_506 | 3 | 4 | 0.0000128536 |
| Trochodendron aralioides | group4 | 5 | CH_tar_439 | 3 | 5 | 0.0000196697 |
| Theobroma cacao | Chromosome_5 | 5 | CH_tca_454 | 3 | 4 | 0.0000146386 |
| Tarenaya hassleriana | NW_010965216.1 | 5 | CH_tha_275 | 3 | 6 | 0.00029572 |
| Tripterygium wilfordii | NC_052246.1 | 5 | CH_twi_32 | 6 | 6 | 1.50015e-16 |
| Vigna mungo | CM024075.1 | 5 | CH_vmu_27 | 6 | 8 | 5.96068e-17 |
| Aethionema arabicum | LG-11 | 6 | CH_aar_103 | 5 | 9 | 0.0000000013291 |
| Aquilegia oxysepala | CHR02 | 6 | CH_aox_117 | 4 | 6 | 0.0000000165879 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.01 | 6 | CH_arhy_548 | 3 | 3 | 0.00000038452 |
| Arabidopsis thaliana | Chr5 | 6 | CH_ath_263 | 6 | 72 | 0.000000614743 |
| Brassica carinata | ChrB04 | 6 | CH_bca_1835 | 4 | 28 | 0.000482145 |
| Brassica carinata | ChrC06 | 6 | CH_bca_612 | 5 | 20 | 0.00000025095 |
| Brassica napus | A01 | 6 | CH_bna_948 | 3 | 3 | 0.0000363316 |
| Brassica oleracea | C9 | 6 | CH_bol_222 | 6 | 46 | 0.0000000404042 |
| Brassica rapa | A01 | 6 | CH_bra_315 | 3 | 3 | 0.0000273153 |
| Cannabis sativa | NC_044370.1 | 6 | CH_cansat_227 | 4 | 8 | 0.000000287577 |
| Cannabis sativa | NC_044372.1 | 6 | CH_cansat_363 | 4 | 23 | 0.000036132 |
| Cicer arietinum L. | Ca_LG5_v3 | 6 | CH_car_22 | 5 | 7 | 0.00000000000457579 |
| Ceratophyllum demersum | 3 | 6 | CH_cde_94 | 3 | 3 | 0.000000327496 |
| Carya illinoinensis | Chr14 | 6 | CH_cil_204 | 4 | 4 | 0.0000000000900215 |
| Corchorus olitorius | AWUE01018132.1 | 6 | CH_col_128 | 2 | 2 | 0.000292099 |
| Carica papaya | supercontig_30 | 6 | CH_cpa_269 | 3 | 4 | 0.0000617794 |
| Carica papaya | supercontig_173 | 6 | CH_cpa_91 | 5 | 13 | 0.0000000121641 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4480 | 6 | CH_cqu_77 | 6 | 7 | 3.01219e-16 |
| Capsella rubella | scaffold_4 | 6 | CH_cru_481 | 3 | 3 | 0.000113791 |
| Daucus carota | DCARv2_Chr2 | 6 | CH_dca_44 | 5 | 5 | 0.0000000000000156382 |
| Eucalyptus grandis | Chr05 | 6 | CH_egr_524 | 4 | 4 | 0.000000000821052 |
| Eucalyptus grandis | Chr08 | 6 | CH_egr_945 | 3 | 4 | 0.00000934905 |
| Eutrema salsugineum | scaffold_9 | 6 | CH_esa_101 | 9 | 75 | 0.000000000104959 |
| Gossypium hirsutum | D13 | 6 | CH_ghi_385 | 4 | 4 | 0.00000000639286 |
| Gossypium hirsutum | A09 | 6 | CH_ghi_807 | 3 | 4 | 0.0000490904 |
| Glycine max | Gm18 | 6 | CH_gma_119 | 5 | 7 | 0.00000000000379957 |
| Gossypium raimondii | Chr13 | 6 | CH_gra_239 | 4 | 5 | 0.0000000633076 |
| Helianthus annuus | HanXRQChr15 | 6 | CH_han_149 | 5 | 6 | 0.000000000000200878 |
| Lupinus albus | Lalb_Chr20 | 6 | CH_lal_4 | 14 | 15 | 2.23747e-38 |
| Lotus japonicus | chr4 | 6 | CH_lja_3 | 12 | 12 | 3.0463e-34 |
| Lonicera japonica | GWHAAZE00000001 | 6 | CH_lonja_295 | 4 | 4 | 0.000000000318986 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 6 | CH_lsa_469 | 3 | 4 | 0.0000033281 |
| Magnolia biondii | Chr10 | 6 | CH_mbi_301 | 5 | 33 | 0.00000000780776 |
| Magnolia biondii | Chr16 | 6 | CH_mbi_457 | 4 | 16 | 0.000000308953 |
| Malus domestica | Chr12 | 6 | CH_mdo_562 | 3 | 3 | 0.000000785171 |
| Punica granatum | NC_045133.1 | 6 | CH_pgr_231 | 5 | 40 | 0.000000199372 |
| Prunus persica | Pp07 | 6 | CH_ppe_446 | 3 | 3 | 0.00000379798 |
| Prunus persica | Pp01 | 6 | CH_ppe_508 | 3 | 4 | 0.0000151863 |
| Pisum sativum | chr5LG3 | 6 | CH_psa_55 | 9 | 75 | 0.00000000000000207446 |
| Phaseolus vulgaris | Chr06 | 6 | CH_pvu_104 | 5 | 7 | 0.00000000000211997 |
| Salvia bowleyana | GWHASIU00000002 | 6 | CH_sbo_442 | 3 | 8 | 0.0000208519 |
| Simmondsia chinensis | GWHAASQ00000017 | 6 | CH_sci_219 | 3 | 6 | 0.00000760816 |
| Sapria himalayana | scaffold1_25991295 | 6 | CH_shi_571 | 2 | 2 | 0.000857706 |
| Schrenkiella parvula | ch3-1 | 6 | CH_spa_202 | 3 | 3 | 0.0000304633 |
| Solanum pennellii | Spenn-ch01 | 6 | CH_spe_344 | 3 | 3 | 0.000000848746 |
| Solanum tuberosum | ST4.03ch05 | 6 | CH_stu_356 | 4 | 9 | 0.000000155428 |
| Solanum tuberosum | ST4.03ch05 | 6 | CH_stu_506 | 3 | 4 | 0.0000128536 |
| Trochodendron aralioides | group4 | 6 | CH_tar_439 | 3 | 5 | 0.0000196697 |
| Theobroma cacao | Chromosome_5 | 6 | CH_tca_454 | 3 | 4 | 0.0000146386 |
| Tarenaya hassleriana | NW_010965216.1 | 6 | CH_tha_275 | 3 | 6 | 0.00029572 |
| Tripterygium wilfordii | NC_052246.1 | 6 | CH_twi_32 | 6 | 6 | 1.50015e-16 |
| Vigna mungo | CM024075.1 | 6 | CH_vmu_27 | 6 | 8 | 5.96068e-17 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |