Functional clusters
Information
- Type InterPro
- Description MADS MEF2-like
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.20 | 5 | CH_arhy_976 | 3 | 3 | 0.000119067 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.10 | 5 | CH_arhy_977 | 3 | 3 | 0.000119067 |
| Brassica oleracea | C3 | 5 | CH_bol_872 | 3 | 4 | 0.000804128 |
| Brassica rapa | A02 | 5 | CH_bra_279 | 4 | 6 | 0.00000907162 |
| Camellia sinensis var. sinensis | Chr6 | 5 | CH_camsi_743 | 4 | 7 | 0.00000459365 |
| Citrus clementina | scaffold_8 | 5 | CH_ccl_496 | 3 | 3 | 0.0000660656 |
| Carpinus fangiana | Cfa02 | 5 | CH_cfa_325 | 5 | 28 | 0.00000542882 |
| Durio zibethinus | NW_019167915.1 | 5 | CH_dzi_507 | 3 | 3 | 0.000341558 |
| Eucalyptus grandis | Chr04 | 5 | CH_egr_1205 | 3 | 3 | 0.000175834 |
| Gossypium hirsutum | D04 | 5 | CH_ghi_798 | 4 | 9 | 0.0000410993 |
| Glycine max | Gm20 | 5 | CH_gma_256 | 5 | 6 | 0.00000000857615 |
| Glycine max | Gm10 | 5 | CH_gma_840 | 3 | 3 | 0.000393526 |
| Hydrangea macrophylla | Hma1.2p1_1051F.1 | 5 | CH_hma_486 | 3 | 4 | 0.000113933 |
| Lupinus albus | Lalb_Chr02 | 5 | CH_lal_219 | 4 | 4 | 0.000000312582 |
| Lupinus albus | Lalb_Chr21 | 5 | CH_lal_557 | 3 | 3 | 0.000189067 |
| Pisum sativum | chr6LG2 | 5 | CH_psa_117 | 5 | 5 | 0.000000000254485 |
| Papaver somniferum | NC_039358.1 | 5 | CH_pso_512 | 4 | 5 | 0.000000257555 |
| Phaseolus vulgaris | Chr07 | 5 | CH_pvu_493 | 3 | 3 | 0.000149191 |
| Quercus lobata | 11 | 5 | CH_qlo_73 | 12 | 17 | 6.98411e-28 |
| Simmondsia chinensis | GWHAASQ00000018 | 5 | CH_sci_176 | 4 | 6 | 0.00000128552 |
| Sequoiadendron giganteum | HRSCAF_1 | 5 | CH_sgi_489 | 6 | 13 | 0.00000000000142213 |
| Trochodendron aralioides | group5 | 5 | CH_tar_242 | 4 | 4 | 0.0000000801234 |
| Vigna mungo | CM024071.1 | 5 | CH_vmu_487 | 3 | 4 | 0.000247271 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.20 | 6 | CH_arhy_976 | 3 | 3 | 0.000119067 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.10 | 6 | CH_arhy_977 | 3 | 3 | 0.000119067 |
| Brassica oleracea | C3 | 6 | CH_bol_872 | 3 | 4 | 0.000804128 |
| Brassica rapa | A02 | 6 | CH_bra_279 | 4 | 6 | 0.00000907162 |
| Camellia sinensis var. sinensis | Chr6 | 6 | CH_camsi_743 | 4 | 7 | 0.00000459365 |
| Citrus clementina | scaffold_8 | 6 | CH_ccl_496 | 3 | 3 | 0.0000660656 |
| Carpinus fangiana | Cfa02 | 6 | CH_cfa_325 | 5 | 28 | 0.00000542882 |
| Durio zibethinus | NW_019167915.1 | 6 | CH_dzi_507 | 3 | 3 | 0.000341558 |
| Eucalyptus grandis | Chr04 | 6 | CH_egr_1205 | 3 | 3 | 0.000175834 |
| Gossypium hirsutum | D04 | 6 | CH_ghi_798 | 4 | 9 | 0.0000410993 |
| Glycine max | Gm20 | 6 | CH_gma_256 | 5 | 6 | 0.00000000857615 |
| Glycine max | Gm10 | 6 | CH_gma_840 | 3 | 3 | 0.000393526 |
| Hydrangea macrophylla | Hma1.2p1_1051F.1 | 6 | CH_hma_486 | 3 | 4 | 0.000113933 |
| Lupinus albus | Lalb_Chr02 | 6 | CH_lal_219 | 4 | 4 | 0.000000312582 |
| Lupinus albus | Lalb_Chr21 | 6 | CH_lal_557 | 3 | 3 | 0.000189067 |
| Pisum sativum | chr6LG2 | 6 | CH_psa_117 | 5 | 5 | 0.000000000254485 |
| Papaver somniferum | NC_039358.1 | 6 | CH_pso_512 | 4 | 5 | 0.000000257555 |
| Phaseolus vulgaris | Chr07 | 6 | CH_pvu_493 | 3 | 3 | 0.000149191 |
| Quercus lobata | 11 | 6 | CH_qlo_73 | 12 | 17 | 6.98411e-28 |
| Simmondsia chinensis | GWHAASQ00000018 | 6 | CH_sci_176 | 4 | 6 | 0.00000128552 |
| Sequoiadendron giganteum | HRSCAF_1 | 6 | CH_sgi_489 | 6 | 13 | 0.00000000000142213 |
| Trochodendron aralioides | group5 | 6 | CH_tar_242 | 4 | 4 | 0.0000000801234 |
| Vigna mungo | CM024071.1 | 6 | CH_vmu_487 | 3 | 4 | 0.000247271 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |