Functional clusters

Information

  • Type Gene Ontology
  • Description biological process involved in symbiotic interaction

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Rhododendron simsii chr04 3 CH_rsi_14 17 29 1.99801e-29
Rhododendron simsii chr04 4 CH_rsi_14 17 29 1.99801e-29

Available child term results

Ontology identifier Description Number of clusters
GO:0009626 plant-type hypersensitive response 18
GO:0010363 regulation of plant-type hypersensitive response 2
GO:0019048 modulation by virus of host process 2
GO:0019836 hemolysis by symbiont of host erythrocytes 2
GO:0030581 symbiont intracellular protein transport in host 14
GO:0034050 programmed cell death induced by symbiont 4
GO:0034051 negative regulation of plant-type hypersensitive response 2
GO:0034052 positive regulation of plant-type hypersensitive response 2
GO:0036377 arbuscular mycorrhizal association 44
GO:0044830 modulation by host of viral RNA genome replication 14
GO:0046741 transport of virus in host, tissue to tissue 40
GO:0051841 positive regulation by host of cytolysis of symbiont cells 32
GO:0051851 modulation by host of symbiont process 102
GO:0052096 formation of syncytium involving giant cell for nutrient acquisition 2
GO:0075133 modulation by symbiont of host calcium or calmodulin-mediated signal transduction 14

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001