Functional clusters
Information
- Type Gene Ontology
- Description modulation by host of symbiont process
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group0 | 3 | CH_ach_220 | 2 | 3 | 0.000488869 |
| Aquilegia oxysepala | CHR05 | 3 | CH_aox_46 | 4 | 6 | 0.0000000048729 |
| Aquilegia oxysepala | CHR02 | 3 | CH_aox_56 | 4 | 7 | 0.0000000113674 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.18 | 3 | CH_arhy_256 | 3 | 4 | 0.000000053777 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.08 | 3 | CH_arhy_586 | 2 | 2 | 0.000299383 |
| Amborella trichopoda | AmTr_v1.0_scaffold00002 | 3 | CH_atr_118 | 3 | 3 | 0.000000530131 |
| Amborella trichopoda | AmTr_v1.0_scaffold00005 | 3 | CH_atr_30 | 5 | 5 | 0.0000000000000167312 |
| Camellia sinensis var. sinensis | Chr6 | 3 | CH_camsi_49 | 5 | 6 | 0.00000000000000119383 |
| Capsicum annuum | PGAv.1.6.scaffold631 | 3 | CH_can_73 | 4 | 4 | 0.00000000000169153 |
| Citrus clementina | scaffold_3 | 3 | CH_ccl_430 | 2 | 2 | 0.000820311 |
| Cucumis melo | chr11 | 3 | CH_cme_84 | 3 | 3 | 0.0000000267031 |
| Cucumis sativus L. | chr6 | 3 | CH_csa_53 | 4 | 4 | 0.0000000000261789 |
| Davidia involucrata | GWHABJS00000016 | 3 | CH_din_57 | 4 | 4 | 0.0000000000262717 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 3 | CH_eca_14 | 6 | 13 | 5.89822e-16 |
| Eucalyptus grandis | Chr02 | 3 | CH_egr_298 | 4 | 4 | 0.000000000126316 |
| Erythranthe guttata | scaffold_2 | 3 | CH_egut_185 | 3 | 5 | 0.00000079518 |
| Gossypium hirsutum | D05 | 3 | CH_ghi_514 | 2 | 3 | 0.000240309 |
| Glycine max | Gm03 | 3 | CH_gma_151 | 4 | 21 | 0.0000000686358 |
| Gossypium raimondii | Chr09 | 3 | CH_gra_266 | 2 | 2 | 0.000160832 |
| Helianthus annuus | HanXRQChr16 | 3 | CH_han_13 | 9 | 11 | 3.58159e-26 |
| Helianthus annuus | HanXRQChr13 | 3 | CH_han_23 | 8 | 10 | 1.37855e-22 |
| Hydrangea macrophylla | Hma1.2p1_0297F.1 | 3 | CH_hma_100 | 3 | 4 | 0.00000414544 |
| Hydrangea macrophylla | Hma1.2p1_0033F.1 | 3 | CH_hma_20 | 5 | 8 | 0.00000000000358074 |
| Lonicera japonica | GWHAAZE00000009 | 3 | CH_lonja_221 | 3 | 4 | 0.0000000860741 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 3 | CH_lsa_100 | 4 | 4 | 0.0000000000855619 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 3 | CH_lsa_475 | 3 | 22 | 0.000730157 |
| Magnolia biondii | Chr18 | 3 | CH_mbi_116 | 4 | 9 | 0.000000000649347 |
| Manihot esculenta | Chromosome05 | 3 | CH_mes_112 | 4 | 5 | 0.000000000119534 |
| Manihot esculenta | Chromosome11 | 3 | CH_mes_194 | 3 | 4 | 0.000000782956 |
| Medicago truncatula | chr2 | 3 | CH_mtr_218 | 4 | 8 | 0.00000000480415 |
| Olea europaea | chr3 | 3 | CH_oeu_13 | 5 | 11 | 0.000000000000168762 |
| Petunia axillaris | Peaxi162Scf00056 | 3 | CH_pax_303 | 2 | 2 | 0.000422134 |
| Petunia axillaris | Peaxi162Scf00115 | 3 | CH_pax_304 | 2 | 2 | 0.000422134 |
| Prunus persica | Pp06 | 3 | CH_ppe_253 | 3 | 6 | 0.00000584043 |
| Pisum sativum | chr3LG5 | 3 | CH_psa_344 | 2 | 3 | 0.000469451 |
| Papaver somniferum | NC_039364.1 | 3 | CH_pso_293 | 3 | 6 | 0.000000532885 |
| Quercus lobata | 1 | 3 | CH_qlo_730 | 2 | 2 | 0.0000516289 |
| Rhododendron simsii | chr13 | 3 | CH_rsi_80 | 5 | 12 | 0.000000000000103 |
| Salvia bowleyana | GWHASIU00000006 | 3 | CH_sbo_6 | 11 | 11 | 1.77993e-38 |
| Simmondsia chinensis | GWHAASQ00000001 | 3 | CH_sci_222 | 2 | 2 | 0.000255428 |
| Sechium edule | LG05 | 3 | CH_sed_249 | 2 | 2 | 0.000428052 |
| Sequoiadendron giganteum | chr3 | 3 | CH_sgi_750 | 3 | 8 | 0.0000019929 |
| Solanum lycopersicum | SL4.0ch11 | 3 | CH_sly_442 | 2 | 2 | 0.000176082 |
| Solanum tuberosum | ST4.03ch11 | 3 | CH_stu_28 | 6 | 6 | 2.227e-19 |
| Trochodendron aralioides | group1 | 3 | CH_tar_187 | 3 | 7 | 0.0000018918 |
| Theobroma cacao | Chromosome_9 | 3 | CH_tca_336 | 2 | 2 | 0.000219716 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 3 | CH_tpr_107 | 3 | 6 | 0.0000006875 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 3 | CH_vma_114 | 3 | 4 | 0.000000207229 |
| Vigna mungo | CM024071.1 | 3 | CH_vmu_68 | 3 | 3 | 0.0000000250507 |
| Vanilla planifolia | CM028161.1 | 3 | CH_vpl_304 | 2 | 4 | 0.000443295 |
| Vitis vinifera | chr15 | 3 | CH_vvi_84 | 4 | 4 | 0.0000000000462124 |
| Actinidia chinensis | Lachesis_group0 | 4 | CH_ach_220 | 2 | 3 | 0.000488869 |
| Aquilegia oxysepala | CHR05 | 4 | CH_aox_46 | 4 | 6 | 0.0000000048729 |
| Aquilegia oxysepala | CHR02 | 4 | CH_aox_56 | 4 | 7 | 0.0000000113674 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.18 | 4 | CH_arhy_256 | 3 | 4 | 0.000000053777 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.08 | 4 | CH_arhy_586 | 2 | 2 | 0.000299383 |
| Amborella trichopoda | AmTr_v1.0_scaffold00002 | 4 | CH_atr_118 | 3 | 3 | 0.000000530131 |
| Amborella trichopoda | AmTr_v1.0_scaffold00005 | 4 | CH_atr_30 | 5 | 5 | 0.0000000000000167312 |
| Camellia sinensis var. sinensis | Chr6 | 4 | CH_camsi_49 | 5 | 6 | 0.00000000000000119383 |
| Capsicum annuum | PGAv.1.6.scaffold631 | 4 | CH_can_73 | 4 | 4 | 0.00000000000169153 |
| Citrus clementina | scaffold_3 | 4 | CH_ccl_430 | 2 | 2 | 0.000820311 |
| Cucumis melo | chr11 | 4 | CH_cme_84 | 3 | 3 | 0.0000000267031 |
| Cucumis sativus L. | chr6 | 4 | CH_csa_53 | 4 | 4 | 0.0000000000261789 |
| Davidia involucrata | GWHABJS00000016 | 4 | CH_din_57 | 4 | 4 | 0.0000000000262717 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 4 | CH_eca_14 | 6 | 13 | 5.89822e-16 |
| Eucalyptus grandis | Chr02 | 4 | CH_egr_298 | 4 | 4 | 0.000000000126316 |
| Erythranthe guttata | scaffold_2 | 4 | CH_egut_185 | 3 | 5 | 0.00000079518 |
| Gossypium hirsutum | D05 | 4 | CH_ghi_514 | 2 | 3 | 0.000240309 |
| Glycine max | Gm03 | 4 | CH_gma_151 | 4 | 21 | 0.0000000686358 |
| Gossypium raimondii | Chr09 | 4 | CH_gra_266 | 2 | 2 | 0.000160832 |
| Helianthus annuus | HanXRQChr16 | 4 | CH_han_13 | 9 | 11 | 3.58159e-26 |
| Helianthus annuus | HanXRQChr13 | 4 | CH_han_23 | 8 | 10 | 1.37855e-22 |
| Hydrangea macrophylla | Hma1.2p1_0297F.1 | 4 | CH_hma_100 | 3 | 4 | 0.00000414544 |
| Hydrangea macrophylla | Hma1.2p1_0033F.1 | 4 | CH_hma_20 | 5 | 8 | 0.00000000000358074 |
| Lonicera japonica | GWHAAZE00000009 | 4 | CH_lonja_221 | 3 | 4 | 0.0000000860741 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 4 | CH_lsa_100 | 4 | 4 | 0.0000000000855619 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 4 | CH_lsa_475 | 3 | 22 | 0.000730157 |
| Magnolia biondii | Chr18 | 4 | CH_mbi_116 | 4 | 9 | 0.000000000649347 |
| Manihot esculenta | Chromosome05 | 4 | CH_mes_112 | 4 | 5 | 0.000000000119534 |
| Manihot esculenta | Chromosome11 | 4 | CH_mes_194 | 3 | 4 | 0.000000782956 |
| Medicago truncatula | chr2 | 4 | CH_mtr_218 | 4 | 8 | 0.00000000480415 |
| Olea europaea | chr3 | 4 | CH_oeu_13 | 5 | 11 | 0.000000000000168762 |
| Petunia axillaris | Peaxi162Scf00056 | 4 | CH_pax_303 | 2 | 2 | 0.000422134 |
| Petunia axillaris | Peaxi162Scf00115 | 4 | CH_pax_304 | 2 | 2 | 0.000422134 |
| Prunus persica | Pp06 | 4 | CH_ppe_253 | 3 | 6 | 0.00000584043 |
| Pisum sativum | chr3LG5 | 4 | CH_psa_344 | 2 | 3 | 0.000469451 |
| Papaver somniferum | NC_039364.1 | 4 | CH_pso_293 | 3 | 6 | 0.000000532885 |
| Quercus lobata | 1 | 4 | CH_qlo_730 | 2 | 2 | 0.0000516289 |
| Rhododendron simsii | chr13 | 4 | CH_rsi_80 | 5 | 12 | 0.000000000000103 |
| Salvia bowleyana | GWHASIU00000006 | 4 | CH_sbo_6 | 11 | 11 | 1.77993e-38 |
| Simmondsia chinensis | GWHAASQ00000001 | 4 | CH_sci_222 | 2 | 2 | 0.000255428 |
| Sechium edule | LG05 | 4 | CH_sed_249 | 2 | 2 | 0.000428052 |
| Sequoiadendron giganteum | chr3 | 4 | CH_sgi_750 | 3 | 8 | 0.0000019929 |
| Solanum lycopersicum | SL4.0ch11 | 4 | CH_sly_442 | 2 | 2 | 0.000176082 |
| Solanum tuberosum | ST4.03ch11 | 4 | CH_stu_28 | 6 | 6 | 2.227e-19 |
| Trochodendron aralioides | group1 | 4 | CH_tar_187 | 3 | 7 | 0.0000018918 |
| Theobroma cacao | Chromosome_9 | 4 | CH_tca_336 | 2 | 2 | 0.000219716 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 4 | CH_tpr_107 | 3 | 6 | 0.0000006875 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 4 | CH_vma_114 | 3 | 4 | 0.000000207229 |
| Vigna mungo | CM024071.1 | 4 | CH_vmu_68 | 3 | 3 | 0.0000000250507 |
| Vanilla planifolia | CM028161.1 | 4 | CH_vpl_304 | 2 | 4 | 0.000443295 |
| Vitis vinifera | chr15 | 4 | CH_vvi_84 | 4 | 4 | 0.0000000000462124 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0044830 | modulation by host of viral RNA genome replication | 14 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |