Functional clusters

Information

  • Type Gene Ontology
  • Description arbuscular mycorrhizal association

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aquilegia oxysepala CHR06 3 CH_aox_76 3 3 0.0000000964818
Brassica carinata Contig723 3 CH_bca_192 3 3 0.0000000383844
Capsicum annuum PGAv.1.6.scaffold1075 3 CH_can_320 2 2 0.0000826105
Coffea canephora chr7 3 CH_ccan_370 2 10 0.000574936
Carica papaya supercontig_90 3 CH_cpa_241 2 2 0.000285198
Helianthus annuus HanXRQChr03 3 CH_han_253 3 3 0.000000125437
Lactuca sativa Lsat_1_v8_lg_4 3 CH_lsa_393 2 2 0.000154202
Malus domestica Chr02 3 CH_mdo_682 2 3 0.000682551
Manihot esculenta Chromosome13 3 CH_mes_66 5 6 0.0000000000000350388
Petunia axillaris Peaxi162Scf00264 3 CH_pax_269 2 2 0.000211067
Striga asiatica scaffold62 3 CH_sas_49 3 4 0.0000267398
Striga asiatica scaffold21 3 CH_sas_63 3 5 0.0000668209
Striga asiatica scaffold8 3 CH_sas_87 3 7 0.000233672
Sequoiadendron giganteum chr5 3 CH_sgi_524 3 3 0.0000000142393
Solanum lycopersicum SL4.0ch02 3 CH_sly_501 2 2 0.000352164
Solanum pennellii Spenn-ch02 3 CH_spe_425 2 2 0.00044479
Solanum pennellii Spenn-ch02 3 CH_spe_426 2 2 0.00044479
Solanum tuberosum ST4.03ch02 3 CH_stu_585 2 2 0.000512453
Solanum tuberosum ST4.03ch02 3 CH_stu_586 2 2 0.000512453
Tripterygium wilfordii NC_052245.1 3 CH_twi_288 2 2 0.000334728
Vigna mungo CM024069.1 3 CH_vmu_284 2 2 0.000387685
Vanilla planifolia CM028161.1 3 CH_vpl_361 2 2 0.00073888
Aquilegia oxysepala CHR06 4 CH_aox_76 3 3 0.0000000964818
Brassica carinata Contig723 4 CH_bca_192 3 3 0.0000000383844
Capsicum annuum PGAv.1.6.scaffold1075 4 CH_can_320 2 2 0.0000826105
Coffea canephora chr7 4 CH_ccan_370 2 10 0.000574936
Carica papaya supercontig_90 4 CH_cpa_241 2 2 0.000285198
Helianthus annuus HanXRQChr03 4 CH_han_253 3 3 0.000000125437
Lactuca sativa Lsat_1_v8_lg_4 4 CH_lsa_393 2 2 0.000154202
Malus domestica Chr02 4 CH_mdo_682 2 3 0.000682551
Manihot esculenta Chromosome13 4 CH_mes_66 5 6 0.0000000000000350388
Petunia axillaris Peaxi162Scf00264 4 CH_pax_269 2 2 0.000211067
Striga asiatica scaffold62 4 CH_sas_49 3 4 0.0000267398
Striga asiatica scaffold21 4 CH_sas_63 3 5 0.0000668209
Striga asiatica scaffold8 4 CH_sas_87 3 7 0.000233672
Sequoiadendron giganteum chr5 4 CH_sgi_524 3 3 0.0000000142393
Solanum lycopersicum SL4.0ch02 4 CH_sly_501 2 2 0.000352164
Solanum pennellii Spenn-ch02 4 CH_spe_425 2 2 0.00044479
Solanum pennellii Spenn-ch02 4 CH_spe_426 2 2 0.00044479
Solanum tuberosum ST4.03ch02 4 CH_stu_585 2 2 0.000512453
Solanum tuberosum ST4.03ch02 4 CH_stu_586 2 2 0.000512453
Tripterygium wilfordii NC_052245.1 4 CH_twi_288 2 2 0.000334728
Vigna mungo CM024069.1 4 CH_vmu_284 2 2 0.000387685
Vanilla planifolia CM028161.1 4 CH_vpl_361 2 2 0.00073888

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001