Functional clusters
Information
- Type Gene Ontology
- Description photosynthesis
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_2 | 3 | CH_aly_3 | 27 | 80 | 2.36547e-32 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 3 | CH_arhy_653 | 5 | 10 | 0.000566967 |
| Arabidopsis thaliana | ChrC | 3 | CH_ath_3 | 30 | 69 | 8.45394e-49 |
| Brassica napus | C04 | 3 | CH_bna_198 | 7 | 14 | 0.000000191611 |
| Brassica napus | A06 | 3 | CH_bna_25 | 12 | 20 | 8.31071e-17 |
| Brassica napus | C09 | 3 | CH_bna_3 | 20 | 39 | 1.31042e-28 |
| Brassica napus | BNapus_Darmor_BZH_scaffold_253 | 3 | CH_bna_35 | 12 | 23 | 8.76019e-16 |
| Brassica napus | C09 | 3 | CH_bna_485 | 5 | 9 | 0.000166162 |
| Brassica oleracea | Boleracea_scaffold_46 | 3 | CH_bol_1 | 30 | 59 | 2.50996e-40 |
| Brassica oleracea | Boleracea_scaffold_29 | 3 | CH_bol_10 | 22 | 67 | 2.22359e-23 |
| Brassica oleracea | Boleracea_scaffold_49 | 3 | CH_bol_11 | 19 | 42 | 5.8212e-23 |
| Brassica oleracea | C9 | 3 | CH_bol_113 | 9 | 26 | 0.000000094705 |
| Brassica oleracea | Boleracea_scaffold_35 | 3 | CH_bol_13 | 20 | 63 | 1.35024e-20 |
| Brassica oleracea | Boleracea_scaffold_47 | 3 | CH_bol_2 | 25 | 38 | 4.41348e-37 |
| Brassica oleracea | C2 | 3 | CH_bol_235 | 5 | 6 | 0.0000271635 |
| Brassica oleracea | Boleracea_scaffold_45 | 3 | CH_bol_28 | 18 | 78 | 0.0000000000000099385 |
| Brassica oleracea | C7 | 3 | CH_bol_30 | 11 | 17 | 0.0000000000000356355 |
| Brassica oleracea | Boleracea_scaffold_44 | 3 | CH_bol_64 | 7 | 7 | 0.000000000400911 |
| Brassica oleracea | Boleracea_scaffold_29 | 3 | CH_bol_7 | 25 | 80 | 2.04983e-26 |
| Brassica oleracea | Boleracea_scaffold_35 | 3 | CH_bol_9 | 22 | 62 | 2.939e-24 |
| Brassica rapa | Brapa_scaffold_25 | 3 | CH_bra_1 | 23 | 42 | 5.78968e-30 |
| Brassica rapa | Brapa_scaffold_138 | 3 | CH_bra_17 | 12 | 19 | 0.000000000000004712 |
| Brassica rapa | Brapa_scaffold_103 | 3 | CH_bra_2 | 25 | 57 | 1.19456e-29 |
| Brassica rapa | Brapa_scaffold_59 | 3 | CH_bra_3 | 16 | 24 | 8.23579e-22 |
| Brassica rapa | Brapa_scaffold_143 | 3 | CH_bra_46 | 11 | 31 | 0.000000000662122 |
| Brassica rapa | Brapa_scaffold_58 | 3 | CH_bra_7 | 21 | 75 | 1.80843e-19 |
| Brassica rapa | A06 | 3 | CH_bra_8 | 19 | 60 | 1.86369e-18 |
| Beta vulgaris | Scaffold_0015 | 3 | CH_bvu_31 | 12 | 27 | 0.000000000000564345 |
| Capsicum annuum | PGAv.1.6.scaffold1185 | 3 | CH_can_199 | 7 | 13 | 0.00000200493 |
| Capsicum annuum | PGAv.1.6.scaffold8 | 3 | CH_can_321 | 6 | 12 | 0.0000863404 |
| Capsicum annuum | PGAv.1.6.scaffold386 | 3 | CH_can_346 | 5 | 7 | 0.000163246 |
| Capsicum annuum | PGAv.1.6.scaffold939 | 3 | CH_can_440 | 4 | 4 | 0.000630142 |
| Cucumis melo | chr00 | 3 | CH_cme_131 | 9 | 47 | 0.00000504188 |
| Erythranthe guttata | scaffold_4 | 3 | CH_egut_53 | 11 | 16 | 0.0000000000000136226 |
| Gossypium hirsutum | A12 | 3 | CH_ghi_557 | 5 | 8 | 0.000350259 |
| Gossypium hirsutum | A12 | 3 | CH_ghi_81 | 10 | 13 | 0.000000000000147592 |
| Helianthus annuus | HanXRQChr02 | 3 | CH_han_235 | 7 | 10 | 0.000000050286 |
| Lupinus albus | Lalb_Chr23 | 3 | CH_lal_8 | 21 | 44 | 1.61105e-25 |
| Lotus japonicus | Contig00319 | 3 | CH_lja_69 | 10 | 32 | 0.00000000380412 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 3 | CH_lsa_403 | 4 | 4 | 0.000197688 |
| Olea europaea | chr17 | 3 | CH_oeu_108 | 8 | 38 | 0.0000057607 |
| Olea europaea | chr19 | 3 | CH_oeu_43 | 7 | 11 | 0.00000000691842 |
| Olea europaea | chr1 | 3 | CH_oeu_65 | 8 | 25 | 0.000000137432 |
| Punica granatum | NC_035240.1 | 3 | CH_pgr_2 | 30 | 67 | 6.93108e-39 |
| Physcomitrium patens | Chr21 | 3 | CH_ppa_102 | 5 | 6 | 0.0000628537 |
| Populus trichocarpa | Chr11 | 3 | CH_ptr_100 | 10 | 19 | 0.0000000000160818 |
| Simmondsia chinensis | GWHAASQ00000013 | 3 | CH_sci_128 | 5 | 7 | 0.0000319444 |
| Sechium edule | Contig00297 | 3 | CH_sed_16 | 21 | 73 | 3.04634e-20 |
| Sechium edule | Contig00347 | 3 | CH_sed_92 | 6 | 7 | 0.000000261456 |
| Solanum lycopersicum | SL4.0ch09 | 3 | CH_sly_381 | 5 | 7 | 0.000100501 |
| Solanum lycopersicum | SL4.0ch10 | 3 | CH_sly_382 | 5 | 7 | 0.000100501 |
| Selaginella moellendorffii | scaffold_175 | 3 | CH_smo_1 | 27 | 55 | 1.9216e-36 |
| Solanum pennellii | Spenn-ch12 | 3 | CH_spe_462 | 4 | 6 | 0.000836859 |
| Selenicereus undatus | Scaffold_33675 | 3 | CH_sun_202 | 4 | 4 | 0.000440093 |
| Selenicereus undatus | Scaffold_3410 | 3 | CH_sun_83 | 5 | 6 | 0.0000291817 |
| Selenicereus undatus | Scaffold_33676 | 3 | CH_sun_88 | 6 | 12 | 0.0000476217 |
| Utricularia gibba | unitig_87 | 3 | CH_ugi_38 | 5 | 5 | 0.00000186327 |
| Arabidopsis lyrata | scaffold_2 | 4 | CH_aly_3 | 27 | 80 | 2.36547e-32 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 4 | CH_arhy_653 | 5 | 10 | 0.000566967 |
| Arabidopsis thaliana | ChrC | 4 | CH_ath_3 | 30 | 69 | 8.45394e-49 |
| Brassica napus | C04 | 4 | CH_bna_198 | 7 | 14 | 0.000000191611 |
| Brassica napus | A06 | 4 | CH_bna_25 | 12 | 20 | 8.31071e-17 |
| Brassica napus | C09 | 4 | CH_bna_3 | 20 | 39 | 1.31042e-28 |
| Brassica napus | BNapus_Darmor_BZH_scaffold_253 | 4 | CH_bna_35 | 12 | 23 | 8.76019e-16 |
| Brassica napus | C09 | 4 | CH_bna_485 | 5 | 9 | 0.000166162 |
| Brassica oleracea | Boleracea_scaffold_46 | 4 | CH_bol_1 | 30 | 59 | 2.50996e-40 |
| Brassica oleracea | Boleracea_scaffold_29 | 4 | CH_bol_10 | 22 | 67 | 2.22359e-23 |
| Brassica oleracea | Boleracea_scaffold_49 | 4 | CH_bol_11 | 19 | 42 | 5.8212e-23 |
| Brassica oleracea | C9 | 4 | CH_bol_113 | 9 | 26 | 0.000000094705 |
| Brassica oleracea | Boleracea_scaffold_35 | 4 | CH_bol_13 | 20 | 63 | 1.35024e-20 |
| Brassica oleracea | Boleracea_scaffold_47 | 4 | CH_bol_2 | 25 | 38 | 4.41348e-37 |
| Brassica oleracea | C2 | 4 | CH_bol_235 | 5 | 6 | 0.0000271635 |
| Brassica oleracea | Boleracea_scaffold_45 | 4 | CH_bol_28 | 18 | 78 | 0.0000000000000099385 |
| Brassica oleracea | C7 | 4 | CH_bol_30 | 11 | 17 | 0.0000000000000356355 |
| Brassica oleracea | Boleracea_scaffold_44 | 4 | CH_bol_64 | 7 | 7 | 0.000000000400911 |
| Brassica oleracea | Boleracea_scaffold_29 | 4 | CH_bol_7 | 25 | 80 | 2.04983e-26 |
| Brassica oleracea | Boleracea_scaffold_35 | 4 | CH_bol_9 | 22 | 62 | 2.939e-24 |
| Brassica rapa | Brapa_scaffold_25 | 4 | CH_bra_1 | 23 | 42 | 5.78968e-30 |
| Brassica rapa | Brapa_scaffold_138 | 4 | CH_bra_17 | 12 | 19 | 0.000000000000004712 |
| Brassica rapa | Brapa_scaffold_103 | 4 | CH_bra_2 | 25 | 57 | 1.19456e-29 |
| Brassica rapa | Brapa_scaffold_59 | 4 | CH_bra_3 | 16 | 24 | 8.23579e-22 |
| Brassica rapa | Brapa_scaffold_143 | 4 | CH_bra_46 | 11 | 31 | 0.000000000662122 |
| Brassica rapa | Brapa_scaffold_58 | 4 | CH_bra_7 | 21 | 75 | 1.80843e-19 |
| Brassica rapa | A06 | 4 | CH_bra_8 | 19 | 60 | 1.86369e-18 |
| Beta vulgaris | Scaffold_0015 | 4 | CH_bvu_31 | 12 | 27 | 0.000000000000564345 |
| Capsicum annuum | PGAv.1.6.scaffold1185 | 4 | CH_can_199 | 7 | 13 | 0.00000200493 |
| Capsicum annuum | PGAv.1.6.scaffold8 | 4 | CH_can_321 | 6 | 12 | 0.0000863404 |
| Capsicum annuum | PGAv.1.6.scaffold386 | 4 | CH_can_346 | 5 | 7 | 0.000163246 |
| Capsicum annuum | PGAv.1.6.scaffold939 | 4 | CH_can_440 | 4 | 4 | 0.000630142 |
| Cucumis melo | chr00 | 4 | CH_cme_131 | 9 | 47 | 0.00000504188 |
| Erythranthe guttata | scaffold_4 | 4 | CH_egut_53 | 11 | 16 | 0.0000000000000136226 |
| Gossypium hirsutum | A12 | 4 | CH_ghi_557 | 5 | 8 | 0.000350259 |
| Gossypium hirsutum | A12 | 4 | CH_ghi_81 | 10 | 13 | 0.000000000000147592 |
| Helianthus annuus | HanXRQChr02 | 4 | CH_han_235 | 7 | 10 | 0.000000050286 |
| Lupinus albus | Lalb_Chr23 | 4 | CH_lal_8 | 21 | 44 | 1.61105e-25 |
| Lotus japonicus | Contig00319 | 4 | CH_lja_69 | 10 | 32 | 0.00000000380412 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 4 | CH_lsa_403 | 4 | 4 | 0.000197688 |
| Olea europaea | chr17 | 4 | CH_oeu_108 | 8 | 38 | 0.0000057607 |
| Olea europaea | chr19 | 4 | CH_oeu_43 | 7 | 11 | 0.00000000691842 |
| Olea europaea | chr1 | 4 | CH_oeu_65 | 8 | 25 | 0.000000137432 |
| Punica granatum | NC_035240.1 | 4 | CH_pgr_2 | 30 | 67 | 6.93108e-39 |
| Physcomitrium patens | Chr21 | 4 | CH_ppa_102 | 5 | 6 | 0.0000628537 |
| Populus trichocarpa | Chr11 | 4 | CH_ptr_100 | 10 | 19 | 0.0000000000160818 |
| Simmondsia chinensis | GWHAASQ00000013 | 4 | CH_sci_128 | 5 | 7 | 0.0000319444 |
| Sechium edule | Contig00297 | 4 | CH_sed_16 | 21 | 73 | 3.04634e-20 |
| Sechium edule | Contig00347 | 4 | CH_sed_92 | 6 | 7 | 0.000000261456 |
| Solanum lycopersicum | SL4.0ch09 | 4 | CH_sly_381 | 5 | 7 | 0.000100501 |
| Solanum lycopersicum | SL4.0ch10 | 4 | CH_sly_382 | 5 | 7 | 0.000100501 |
| Selaginella moellendorffii | scaffold_175 | 4 | CH_smo_1 | 27 | 55 | 1.9216e-36 |
| Solanum pennellii | Spenn-ch12 | 4 | CH_spe_462 | 4 | 6 | 0.000836859 |
| Selenicereus undatus | Scaffold_33675 | 4 | CH_sun_202 | 4 | 4 | 0.000440093 |
| Selenicereus undatus | Scaffold_3410 | 4 | CH_sun_83 | 5 | 6 | 0.0000291817 |
| Selenicereus undatus | Scaffold_33676 | 4 | CH_sun_88 | 6 | 12 | 0.0000476217 |
| Utricularia gibba | unitig_87 | 4 | CH_ugi_38 | 5 | 5 | 0.00000186327 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0009765 | photosynthesis, light harvesting | 110 |
| GO:0009767 | photosynthetic electron transport chain | 6 |
| GO:0009768 | photosynthesis, light harvesting in photosystem I | 8 |
| GO:0009769 | photosynthesis, light harvesting in photosystem II | 38 |
| GO:0009773 | photosynthetic electron transport in photosystem I | 2 |
| GO:0009780 | photosynthetic NADP+ reduction | 4 |
| GO:0010205 | photoinhibition | 6 |
| GO:0010206 | photosystem II repair | 2 |
| GO:0010270 | photosystem II oxygen evolving complex assembly | 8 |
| GO:0019684 | photosynthesis, light reaction | 4 |
| GO:0042549 | photosystem II stabilization | 2 |
| GO:0042550 | photosystem I stabilization | 2 |
| GO:0048564 | photosystem I assembly | 6 |
| GO:1905157 | positive regulation of photosynthesis | 2 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |