Functional clusters
Information
- Type MapMan
- Description Enzyme classification.EC_1 oxidoreductases
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_117 | 1 | CH_aag_53 | 6 | 9 | 0.0000159035 |
| Actinidia chinensis | Lachesis_group11 | 1 | CH_ach_104 | 5 | 7 | 0.000112105 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 1 | CH_arhy_451 | 5 | 5 | 0.0000827254 |
| Brassica carinata | ChrC04 | 1 | CH_bca_474 | 6 | 9 | 0.00000976976 |
| Brassica carinata | ChrB07 | 1 | CH_bca_488 | 5 | 5 | 0.0000114992 |
| Camellia sinensis var. sinensis | Chr12 | 1 | CH_camsi_224 | 14 | 58 | 0.0000000222764 |
| Camellia sinensis var. sinensis | Chr7 | 1 | CH_camsi_23 | 21 | 47 | 1.02184e-20 |
| Camellia sinensis var. sinensis | Chr2 | 1 | CH_camsi_275 | 7 | 8 | 0.000000111614 |
| Cannabis sativa | NC_044373.1 | 1 | CH_cansat_79 | 15 | 66 | 0.000000000547059 |
| Capsicum annuum | PGAv.1.6.scaffold681 | 1 | CH_can_75 | 9 | 10 | 0.000000000464538 |
| Capsicum annuum | PGAv.1.6.scaffold836 | 1 | CH_can_93 | 9 | 12 | 0.00000000980013 |
| Ceratophyllum demersum | 5 | 1 | CH_cde_19 | 6 | 7 | 0.0000000299715 |
| Carya illinoinensis | Chr11 | 1 | CH_cil_115 | 9 | 9 | 0.0000000000111988 |
| Carya illinoinensis | Chr15 | 1 | CH_cil_307 | 13 | 66 | 0.0000115812 |
| Carya illinoinensis | Chr13 | 1 | CH_cil_333 | 8 | 20 | 0.0000603864 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1529 | 1 | CH_cqu_509 | 5 | 6 | 0.00047836 |
| Daucus carota | DCARv2_Chr1 | 1 | CH_dca_127 | 8 | 13 | 0.000000405236 |
| Daucus carota | DCARv2_Chr1 | 1 | CH_dca_23 | 12 | 16 | 0.0000000000000581125 |
| Daucus carota | DCARv2_Chr3 | 1 | CH_dca_264 | 8 | 23 | 0.000131582 |
| Davidia involucrata | GWHABJS00000003 | 1 | CH_din_388 | 5 | 6 | 0.000217363 |
| Erigeron canadensis | Conyza_canadensis_scaffold:8 | 1 | CH_eca_443 | 9 | 50 | 0.000422008 |
| Gossypium hirsutum | D10 | 1 | CH_ghi_140 | 18 | 80 | 0.000000000283274 |
| Glycine max | Gm18 | 1 | CH_gma_540 | 11 | 75 | 0.000452642 |
| Helianthus annuus | HanXRQChr14 | 1 | CH_han_100 | 16 | 47 | 0.000000000010203 |
| Magnolia biondii | Chr17 | 1 | CH_mbi_212 | 8 | 19 | 0.00000110503 |
| Magnolia biondii | Chr02 | 1 | CH_mbi_269 | 9 | 35 | 0.0000103526 |
| Micromonas commoda | Chr_04 | 1 | CH_mco_37 | 5 | 24 | 0.000965245 |
| Manihot esculenta | Chromosome13 | 1 | CH_mes_144 | 8 | 10 | 0.0000000119455 |
| Manihot esculenta | Chromosome02 | 1 | CH_mes_65 | 12 | 19 | 0.00000000000108203 |
| Petunia axillaris | Peaxi162Scf00078 | 1 | CH_pax_278 | 7 | 16 | 0.00023756 |
| Petunia axillaris | Peaxi162Scf00049 | 1 | CH_pax_279 | 6 | 10 | 0.000252885 |
| Petunia axillaris | Peaxi162Scf00993 | 1 | CH_pax_280 | 6 | 10 | 0.000252885 |
| Papaver somniferum | NW_020618825.1 | 1 | CH_pso_159 | 14 | 65 | 0.00000000337607 |
| Papaver somniferum | NC_039359.1 | 1 | CH_pso_195 | 7 | 8 | 0.0000000238099 |
| Papaver somniferum | NC_039367.1 | 1 | CH_pso_419 | 6 | 10 | 0.0000510711 |
| Populus trichocarpa | Chr09 | 1 | CH_ptr_339 | 9 | 31 | 0.000102681 |
| Populus trichocarpa | Chr07 | 1 | CH_ptr_78 | 16 | 47 | 0.00000000000381523 |
| Quercus lobata | CM012294 | 1 | CH_qlo_298 | 15 | 44 | 0.00000000204601 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 1 | CH_rch_294 | 15 | 77 | 0.000000279429 |
| Striga asiatica | scaffold15 | 1 | CH_sas_7 | 8 | 15 | 0.00000000558747 |
| Salvia bowleyana | GWHASIU00000002 | 1 | CH_sbo_124 | 14 | 68 | 0.0000000184413 |
| Salix brachista | GWHAAZH00000009 | 1 | CH_sbr_199 | 9 | 31 | 0.0000275438 |
| Solanum lycopersicum | SL4.0ch01 | 1 | CH_sly_120 | 10 | 19 | 0.00000000420972 |
| Solanum lycopersicum | SL4.0ch02 | 1 | CH_sly_445 | 5 | 6 | 0.000254991 |
| Solanum lycopersicum | SL4.0ch02 | 1 | CH_sly_539 | 5 | 7 | 0.000880157 |
| Solanum lycopersicum | SL4.0ch09 | 1 | CH_sly_80 | 16 | 54 | 0.0000000000115324 |
| Selaginella moellendorffii | scaffold_3 | 1 | CH_smo_79 | 9 | 29 | 0.0000607949 |
| Solanum pennellii | Spenn-ch02 | 1 | CH_spe_520 | 5 | 8 | 0.000744436 |
| Solanum pennellii | Spenn-ch01 | 1 | CH_spe_53 | 11 | 19 | 0.00000000000340479 |
| Solanum pennellii | Spenn-ch02 | 1 | CH_spe_60 | 9 | 12 | 0.0000000000689862 |
| Solanum tuberosum | ST4.03ch02 | 1 | CH_stu_158 | 8 | 10 | 0.0000000267389 |
| Solanum tuberosum | ST4.03ch01 | 1 | CH_stu_343 | 9 | 26 | 0.0000269211 |
| Selenicereus undatus | Scaffold_33675 | 1 | CH_sun_19 | 10 | 27 | 0.00000000162079 |
| Selenicereus undatus | Scaffold_2055 | 1 | CH_sun_37 | 11 | 53 | 0.000000112597 |
| Trochodendron aralioides | group12 | 1 | CH_tar_392 | 6 | 12 | 0.000221587 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_117 | 11 | 26 | 0.000000149303 |
| Vitis vinifera | chr5 | 1 | CH_vvi_44 | 13 | 14 | 2.07962e-16 |
| Zea mays | 1 | 1 | CH_zma_86 | 6 | 7 | 0.000000516724 |
| Anthoceros agrestis | Sc2ySwM_117 | 2 | CH_aag_53 | 6 | 9 | 0.0000159035 |
| Actinidia chinensis | Lachesis_group11 | 2 | CH_ach_104 | 5 | 7 | 0.000112105 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 2 | CH_arhy_451 | 5 | 5 | 0.0000827254 |
| Brassica carinata | ChrC04 | 2 | CH_bca_474 | 6 | 9 | 0.00000976976 |
| Brassica carinata | ChrB07 | 2 | CH_bca_488 | 5 | 5 | 0.0000114992 |
| Camellia sinensis var. sinensis | Chr12 | 2 | CH_camsi_224 | 14 | 58 | 0.0000000222764 |
| Camellia sinensis var. sinensis | Chr7 | 2 | CH_camsi_23 | 21 | 47 | 1.02184e-20 |
| Camellia sinensis var. sinensis | Chr2 | 2 | CH_camsi_275 | 7 | 8 | 0.000000111614 |
| Cannabis sativa | NC_044373.1 | 2 | CH_cansat_79 | 15 | 66 | 0.000000000547059 |
| Capsicum annuum | PGAv.1.6.scaffold681 | 2 | CH_can_75 | 9 | 10 | 0.000000000464538 |
| Capsicum annuum | PGAv.1.6.scaffold836 | 2 | CH_can_93 | 9 | 12 | 0.00000000980013 |
| Ceratophyllum demersum | 5 | 2 | CH_cde_19 | 6 | 7 | 0.0000000299715 |
| Carya illinoinensis | Chr11 | 2 | CH_cil_115 | 9 | 9 | 0.0000000000111988 |
| Carya illinoinensis | Chr15 | 2 | CH_cil_307 | 13 | 66 | 0.0000115812 |
| Carya illinoinensis | Chr13 | 2 | CH_cil_333 | 8 | 20 | 0.0000603864 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1529 | 2 | CH_cqu_509 | 5 | 6 | 0.00047836 |
| Daucus carota | DCARv2_Chr1 | 2 | CH_dca_127 | 8 | 13 | 0.000000405236 |
| Daucus carota | DCARv2_Chr1 | 2 | CH_dca_23 | 12 | 16 | 0.0000000000000581125 |
| Daucus carota | DCARv2_Chr3 | 2 | CH_dca_264 | 8 | 23 | 0.000131582 |
| Davidia involucrata | GWHABJS00000003 | 2 | CH_din_388 | 5 | 6 | 0.000217363 |
| Erigeron canadensis | Conyza_canadensis_scaffold:8 | 2 | CH_eca_443 | 9 | 50 | 0.000422008 |
| Gossypium hirsutum | D10 | 2 | CH_ghi_140 | 18 | 80 | 0.000000000283274 |
| Glycine max | Gm18 | 2 | CH_gma_540 | 11 | 75 | 0.000452642 |
| Helianthus annuus | HanXRQChr14 | 2 | CH_han_100 | 16 | 47 | 0.000000000010203 |
| Magnolia biondii | Chr17 | 2 | CH_mbi_212 | 8 | 19 | 0.00000110503 |
| Magnolia biondii | Chr02 | 2 | CH_mbi_269 | 9 | 35 | 0.0000103526 |
| Micromonas commoda | Chr_04 | 2 | CH_mco_37 | 5 | 24 | 0.000965245 |
| Manihot esculenta | Chromosome13 | 2 | CH_mes_144 | 8 | 10 | 0.0000000119455 |
| Manihot esculenta | Chromosome02 | 2 | CH_mes_65 | 12 | 19 | 0.00000000000108203 |
| Petunia axillaris | Peaxi162Scf00078 | 2 | CH_pax_278 | 7 | 16 | 0.00023756 |
| Petunia axillaris | Peaxi162Scf00049 | 2 | CH_pax_279 | 6 | 10 | 0.000252885 |
| Petunia axillaris | Peaxi162Scf00993 | 2 | CH_pax_280 | 6 | 10 | 0.000252885 |
| Papaver somniferum | NW_020618825.1 | 2 | CH_pso_159 | 14 | 65 | 0.00000000337607 |
| Papaver somniferum | NC_039359.1 | 2 | CH_pso_195 | 7 | 8 | 0.0000000238099 |
| Papaver somniferum | NC_039367.1 | 2 | CH_pso_419 | 6 | 10 | 0.0000510711 |
| Populus trichocarpa | Chr09 | 2 | CH_ptr_339 | 9 | 31 | 0.000102681 |
| Populus trichocarpa | Chr07 | 2 | CH_ptr_78 | 16 | 47 | 0.00000000000381523 |
| Quercus lobata | CM012294 | 2 | CH_qlo_298 | 15 | 44 | 0.00000000204601 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 2 | CH_rch_294 | 15 | 77 | 0.000000279429 |
| Striga asiatica | scaffold15 | 2 | CH_sas_7 | 8 | 15 | 0.00000000558747 |
| Salvia bowleyana | GWHASIU00000002 | 2 | CH_sbo_124 | 14 | 68 | 0.0000000184413 |
| Salix brachista | GWHAAZH00000009 | 2 | CH_sbr_199 | 9 | 31 | 0.0000275438 |
| Solanum lycopersicum | SL4.0ch01 | 2 | CH_sly_120 | 10 | 19 | 0.00000000420972 |
| Solanum lycopersicum | SL4.0ch02 | 2 | CH_sly_445 | 5 | 6 | 0.000254991 |
| Solanum lycopersicum | SL4.0ch02 | 2 | CH_sly_539 | 5 | 7 | 0.000880157 |
| Solanum lycopersicum | SL4.0ch09 | 2 | CH_sly_80 | 16 | 54 | 0.0000000000115324 |
| Selaginella moellendorffii | scaffold_3 | 2 | CH_smo_79 | 9 | 29 | 0.0000607949 |
| Solanum pennellii | Spenn-ch02 | 2 | CH_spe_520 | 5 | 8 | 0.000744436 |
| Solanum pennellii | Spenn-ch01 | 2 | CH_spe_53 | 11 | 19 | 0.00000000000340479 |
| Solanum pennellii | Spenn-ch02 | 2 | CH_spe_60 | 9 | 12 | 0.0000000000689862 |
| Solanum tuberosum | ST4.03ch02 | 2 | CH_stu_158 | 8 | 10 | 0.0000000267389 |
| Solanum tuberosum | ST4.03ch01 | 2 | CH_stu_343 | 9 | 26 | 0.0000269211 |
| Selenicereus undatus | Scaffold_33675 | 2 | CH_sun_19 | 10 | 27 | 0.00000000162079 |
| Selenicereus undatus | Scaffold_2055 | 2 | CH_sun_37 | 11 | 53 | 0.000000112597 |
| Trochodendron aralioides | group12 | 2 | CH_tar_392 | 6 | 12 | 0.000221587 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_117 | 11 | 26 | 0.000000149303 |
| Vitis vinifera | chr5 | 2 | CH_vvi_44 | 13 | 14 | 2.07962e-16 |
| Zea mays | 1 | 2 | CH_zma_86 | 6 | 7 | 0.000000516724 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| 50.1.1 | Enzyme classification.EC_1 oxidoreductases.EC_1.1 oxidoreductase acting on CH-OH group of donor | 1014 |
| 50.1.10 | Enzyme classification.EC_1 oxidoreductases.EC_1.10 oxidoreductase acting on diphenol or related substance as donor | 330 |
| 50.1.11 | Enzyme classification.EC_1 oxidoreductases.EC_1.11 oxidoreductase acting on peroxide as acceptor | 2 |
| 50.1.12 | Enzyme classification.EC_1 oxidoreductases.EC_1.13 oxidoreductase acting on single donor with incorporation of molecular oxygen (oxygenase) | 159 |
| 50.1.13 | Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen | 2209 |
| 50.1.16 | Enzyme classification.EC_1 oxidoreductases.EC_1.17 oxidoreductase acting on CH or CH2 group | 16 |
| 50.1.17 | Enzyme classification.EC_1 oxidoreductases.EC_1.18 oxidoreductase acting on iron-sulfur protein as donor | 2 |
| 50.1.2 | Enzyme classification.EC_1 oxidoreductases.EC_1.2 oxidoreductase acting on aldehyde or oxo group of donor | 21 |
| 50.1.3 | Enzyme classification.EC_1 oxidoreductases.EC_1.3 oxidoreductase acting on CH-CH group of donor | 485 |
| 50.1.4 | Enzyme classification.EC_1 oxidoreductases.EC_1.4 oxidoreductase acting on CH-NH2 group of donor | 18 |
| 50.1.6 | Enzyme classification.EC_1 oxidoreductases.EC_1.6 oxidoreductase acting on NADH or NADPH | 4 |
| 50.1.7 | Enzyme classification.EC_1 oxidoreductases.EC_1.7 oxidoreductase acting on other nitrogenous compound as donor | 4 |
| 50.1.8 | Enzyme classification.EC_1 oxidoreductases.EC_1.8 oxidoreductase acting on sulfur group of donor | 4 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |