Functional clusters

Information

  • Type MapMan
  • Description Enzyme classification.EC_1 oxidoreductases.EC_1.13 oxidoreductase acting on single donor with incorporation of molecular oxygen (oxygenase)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Actinidia chinensis Lachesis_group0 1 CH_ach_65 3 4 0.0000064431
Actinidia chinensis Lachesis_group20 1 CH_ach_71 3 5 0.0000161037
Avicennia marina ScioBoG_94932_HRSCAF_95134 1 CH_ama_29 3 3 0.000000624499
Amaranthus hybridus AmaHy_arrow1_Scaffold_6 1 CH_amhyb_69 3 4 0.00000238033
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 1 CH_arhy_119 5 5 0.0000000000051259
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 1 CH_arhy_188 4 4 0.00000000901093
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.08 1 CH_arhy_441 3 4 0.0000617103
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.18 1 CH_arhy_681 3 7 0.000539232
Beta vulgaris Chr4_EL10_PGA_scaffold1 1 CH_bvu_32 5 8 0.0000000000091122
Camellia sinensis var. sinensis Chr3 1 CH_camsi_377 3 7 0.00000220718
Cannabis sativa NC_044375.1 1 CH_cansat_65 5 11 0.0000000000827991
Capsicum annuum PGAv.1.6.scaffold1034 1 CH_can_111 4 6 0.0000000253795
Capsicum annuum PGAv.1.6.scaffold907 1 CH_can_194 3 3 0.00000372633
Cicer arietinum L. Ca_LG7_v3 1 CH_car_88 3 4 0.00000305246
Coffea canephora chr2 1 CH_ccan_96 3 20 0.000000620258
Carpinus fangiana Cfa02 1 CH_cfa_123 3 3 0.00000048182
Citrullus lanatus CG_Chr02 1 CH_cla_3 8 9 3.6834e-22
Cucumis melo chr05 1 CH_cme_13 8 14 1.12982e-18
Cucumis melo chr05 1 CH_cme_27 6 7 0.0000000000000112909
Carica papaya supercontig_8 1 CH_cpa_118 3 4 0.0000119257
Chenopodium quinoa C_Quinoa_Scaffold_2088 1 CH_cqu_104 4 5 0.0000000021777
Chenopodium quinoa C_Quinoa_Scaffold_3820 1 CH_cqu_221 3 3 0.00000153229
Cucumis sativus L. chr2 1 CH_csa_153 3 3 0.00000585356
Cucumis sativus L. chr2 1 CH_csa_8 9 14 7.65155e-23
Davidia involucrata GWHABJS00000005 1 CH_din_135 4 9 0.00000022872
Durio zibethinus NW_019168004.1 1 CH_dzi_106 3 3 0.000000386688
Erigeron canadensis Conyza_canadensis_scaffold:4 1 CH_eca_198 3 4 0.00000199311
Eucalyptus grandis Chr08 1 CH_egr_118 6 6 1.42817e-17
Fragaria vesca Fvb6 1 CH_fve_482 2 2 0.000883652
Gossypium hirsutum A08 1 CH_ghi_367 3 3 0.00000312821
Gossypium hirsutum D08 1 CH_ghi_368 3 3 0.00000312821
Glycine max Gm13 1 CH_gma_124 4 4 0.00000000966339
Glycine max Gm07 1 CH_gma_125 4 4 0.00000000966339
Glycine max Gm15 1 CH_gma_295 3 3 0.0000154295
Glycine max Gm08 1 CH_gma_40 6 7 0.0000000000000241585
Gossypium raimondii Chr04 1 CH_gra_117 4 7 0.0000000294225
Gossypium raimondii Chr04 1 CH_gra_207 3 4 0.00000965447
Lupinus albus Lalb_Chr24 1 CH_lal_112 3 3 0.00000118167
Lotus japonicus chr3 1 CH_lja_4 10 10 1.22364e-28
Lonicera japonica GWHAAZE00000002 1 CH_lonja_111 7 55 0.000000000123284
Lonicera japonica GWHAAZE00000005 1 CH_lonja_415 3 5 0.000082775
Lactuca sativa Lsat_1_v8_lg_9 1 CH_lsa_144 4 12 0.0000000141055
Magnolia biondii Chr01 1 CH_mbi_118 4 10 0.00000000908711
Malus domestica Chr04 1 CH_mdo_148 4 6 0.00000000334852
Malus domestica Chr12 1 CH_mdo_302 3 4 0.00000392511
Medicago truncatula chr8 1 CH_mtr_11 13 22 1.81806e-34
Oryza sativa ssp. japonica chr03 1 CH_osa_188 3 12 0.0000386196
Physcomitrium patens Chr15 1 CH_ppa_12 4 4 0.000000000341638
Prunus persica Pp06 1 CH_ppe_66 5 6 0.0000000000000780385
Pisum sativum chr5LG3 1 CH_psa_180 4 37 0.0000138335
Pisum sativum chr4LG4 1 CH_psa_353 3 15 0.000407583
Populus trichocarpa Chr05 1 CH_ptr_119 4 5 0.000000000955755
Phaseolus vulgaris Chr05 1 CH_pvu_108 4 4 0.0000000126449
Phaseolus vulgaris Chr10 1 CH_pvu_5 13 15 9.8761e-36
Quercus lobata 3 1 CH_qlo_111 8 40 0.00000000000000102862
Quercus lobata 5 1 CH_qlo_330 4 5 0.00000000631521
Rosa chinensis RcHm_v2.0_Chr5 1 CH_rch_376 3 4 0.00000272673
Rosa chinensis RcHm_v2.0_Chr3 1 CH_rch_377 3 4 0.00000272673
Rhododendron simsii chr07 1 CH_rsi_210 3 3 0.000000349805
Salvia bowleyana GWHASIU00000007 1 CH_sbo_422 2 2 0.00045498
Sechium edule LG03 1 CH_sed_12 8 10 7.79828e-19
Sechium edule LG08 1 CH_sed_174 3 3 0.0000309972
Sechium edule LG01 1 CH_sed_315 3 6 0.000618535
Sechium edule LG11 1 CH_sed_4 11 13 5.6746e-28
Sequoiadendron giganteum chr7 1 CH_sgi_36 15 74 9.26386e-28
Sequoiadendron giganteum chr6 1 CH_sgi_9 14 17 6.09042e-37
Solanum lycopersicum SL4.0ch01 1 CH_sly_36 6 6 2.69028e-17
Selaginella moellendorffii scaffold_44 1 CH_smo_101 3 6 0.00014625
Solanum pennellii Spenn-ch00 1 CH_spe_189 3 3 0.00000166188
Solanum pennellii Spenn-ch01 1 CH_spe_96 4 5 0.0000000024019
Solanum tuberosum ST4.03ch01 1 CH_stu_19 7 7 4.89651e-21
Selenicereus undatus Scaffold_33680 1 CH_sun_291 2 2 0.000726639
Trochodendron aralioides group2 1 CH_tar_570 2 2 0.000900549
Theobroma cacao Chromosome_5 1 CH_tca_39 6 9 0.0000000000000318705
Trifolium pratense Tp57577_TGAC_v2_LG6 1 CH_tpr_276 4 31 0.000195617
Trifolium pratense Tp57577_TGAC_v2_LG6 1 CH_tpr_4 8 13 7.26285e-19
Utricularia gibba unitig_37 1 CH_ugi_301 2 2 0.000734592
Vaccinium macrocarpon chr12_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_42 5 6 0.00000000000265723
Vigna mungo CM024078.1 1 CH_vmu_2 12 18 6.17939e-30
Vigna mungo CM024079.1 1 CH_vmu_99 4 6 0.000000212799
Actinidia chinensis Lachesis_group0 2 CH_ach_65 3 4 0.0000064431
Actinidia chinensis Lachesis_group20 2 CH_ach_71 3 5 0.0000161037
Avicennia marina ScioBoG_94932_HRSCAF_95134 2 CH_ama_29 3 3 0.000000624499
Amaranthus hybridus AmaHy_arrow1_Scaffold_6 2 CH_amhyb_69 3 4 0.00000238033
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 2 CH_arhy_119 5 5 0.0000000000051259
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 2 CH_arhy_188 4 4 0.00000000901093
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.08 2 CH_arhy_441 3 4 0.0000617103
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.18 2 CH_arhy_681 3 7 0.000539232
Beta vulgaris Chr4_EL10_PGA_scaffold1 2 CH_bvu_32 5 8 0.0000000000091122
Camellia sinensis var. sinensis Chr3 2 CH_camsi_377 3 7 0.00000220718
Cannabis sativa NC_044375.1 2 CH_cansat_65 5 11 0.0000000000827991
Capsicum annuum PGAv.1.6.scaffold1034 2 CH_can_111 4 6 0.0000000253795
Capsicum annuum PGAv.1.6.scaffold907 2 CH_can_194 3 3 0.00000372633
Cicer arietinum L. Ca_LG7_v3 2 CH_car_88 3 4 0.00000305246
Coffea canephora chr2 2 CH_ccan_96 3 20 0.000000620258
Carpinus fangiana Cfa02 2 CH_cfa_123 3 3 0.00000048182
Citrullus lanatus CG_Chr02 2 CH_cla_3 8 9 3.6834e-22
Cucumis melo chr05 2 CH_cme_13 8 14 1.12982e-18
Cucumis melo chr05 2 CH_cme_27 6 7 0.0000000000000112909
Carica papaya supercontig_8 2 CH_cpa_118 3 4 0.0000119257
Chenopodium quinoa C_Quinoa_Scaffold_2088 2 CH_cqu_104 4 5 0.0000000021777
Chenopodium quinoa C_Quinoa_Scaffold_3820 2 CH_cqu_221 3 3 0.00000153229
Cucumis sativus L. chr2 2 CH_csa_153 3 3 0.00000585356
Cucumis sativus L. chr2 2 CH_csa_8 9 14 7.65155e-23
Davidia involucrata GWHABJS00000005 2 CH_din_135 4 9 0.00000022872
Durio zibethinus NW_019168004.1 2 CH_dzi_106 3 3 0.000000386688
Erigeron canadensis Conyza_canadensis_scaffold:4 2 CH_eca_198 3 4 0.00000199311
Eucalyptus grandis Chr08 2 CH_egr_118 6 6 1.42817e-17
Fragaria vesca Fvb6 2 CH_fve_482 2 2 0.000883652
Gossypium hirsutum A08 2 CH_ghi_367 3 3 0.00000312821
Gossypium hirsutum D08 2 CH_ghi_368 3 3 0.00000312821
Glycine max Gm13 2 CH_gma_124 4 4 0.00000000966339
Glycine max Gm07 2 CH_gma_125 4 4 0.00000000966339
Glycine max Gm15 2 CH_gma_295 3 3 0.0000154295
Glycine max Gm08 2 CH_gma_40 6 7 0.0000000000000241585
Gossypium raimondii Chr04 2 CH_gra_117 4 7 0.0000000294225
Gossypium raimondii Chr04 2 CH_gra_207 3 4 0.00000965447
Lupinus albus Lalb_Chr24 2 CH_lal_112 3 3 0.00000118167
Lotus japonicus chr3 2 CH_lja_4 10 10 1.22364e-28
Lonicera japonica GWHAAZE00000002 2 CH_lonja_111 7 55 0.000000000123284
Lonicera japonica GWHAAZE00000005 2 CH_lonja_415 3 5 0.000082775
Lactuca sativa Lsat_1_v8_lg_9 2 CH_lsa_144 4 12 0.0000000141055
Magnolia biondii Chr01 2 CH_mbi_118 4 10 0.00000000908711
Malus domestica Chr04 2 CH_mdo_148 4 6 0.00000000334852
Malus domestica Chr12 2 CH_mdo_302 3 4 0.00000392511
Oryza sativa ssp. japonica chr03 2 CH_osa_188 3 12 0.0000386196
Physcomitrium patens Chr15 2 CH_ppa_12 4 4 0.000000000341638
Prunus persica Pp06 2 CH_ppe_66 5 6 0.0000000000000780385
Pisum sativum chr5LG3 2 CH_psa_180 4 37 0.0000138335
Pisum sativum chr4LG4 2 CH_psa_353 3 15 0.000407583
Populus trichocarpa Chr05 2 CH_ptr_119 4 5 0.000000000955755
Phaseolus vulgaris Chr05 2 CH_pvu_108 4 4 0.0000000126449
Phaseolus vulgaris Chr10 2 CH_pvu_5 13 15 9.8761e-36
Quercus lobata 3 2 CH_qlo_111 8 40 0.00000000000000102862
Quercus lobata 5 2 CH_qlo_330 4 5 0.00000000631521
Rosa chinensis RcHm_v2.0_Chr5 2 CH_rch_376 3 4 0.00000272673
Rosa chinensis RcHm_v2.0_Chr3 2 CH_rch_377 3 4 0.00000272673
Rhododendron simsii chr07 2 CH_rsi_210 3 3 0.000000349805
Salvia bowleyana GWHASIU00000007 2 CH_sbo_422 2 2 0.00045498
Sechium edule LG03 2 CH_sed_12 8 10 7.79828e-19
Sechium edule LG08 2 CH_sed_174 3 3 0.0000309972
Sechium edule LG01 2 CH_sed_315 3 6 0.000618535
Sechium edule LG11 2 CH_sed_4 11 13 5.6746e-28
Sequoiadendron giganteum chr7 2 CH_sgi_36 15 74 9.26386e-28
Sequoiadendron giganteum chr6 2 CH_sgi_9 14 17 6.09042e-37
Solanum lycopersicum SL4.0ch01 2 CH_sly_36 6 6 2.69028e-17
Selaginella moellendorffii scaffold_44 2 CH_smo_101 3 6 0.00014625
Solanum pennellii Spenn-ch00 2 CH_spe_189 3 3 0.00000166188
Solanum pennellii Spenn-ch01 2 CH_spe_96 4 5 0.0000000024019
Solanum tuberosum ST4.03ch01 2 CH_stu_19 7 7 4.89651e-21
Selenicereus undatus Scaffold_33680 2 CH_sun_291 2 2 0.000726639
Trochodendron aralioides group2 2 CH_tar_570 2 2 0.000900549
Theobroma cacao Chromosome_5 2 CH_tca_39 6 9 0.0000000000000318705
Trifolium pratense Tp57577_TGAC_v2_LG6 2 CH_tpr_276 4 31 0.000195617
Trifolium pratense Tp57577_TGAC_v2_LG6 2 CH_tpr_4 8 13 7.26285e-19
Utricularia gibba unitig_37 2 CH_ugi_301 2 2 0.000734592
Vaccinium macrocarpon chr12_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_42 5 6 0.00000000000265723
Vigna mungo CM024078.1 2 CH_vmu_2 12 18 6.17939e-30
Vigna mungo CM024079.1 2 CH_vmu_99 4 6 0.000000212799

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001