Functional clusters

Information

  • Type MapMan
  • Description Enzyme classification.EC_1 oxidoreductases.EC_1.17 oxidoreductase acting on CH or CH2 group

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrC06 1 CH_bca_1023 2 2 0.00059854
Brassica oleracea C2 1 CH_bol_448 2 3 0.000980536
Magnolia biondii Chr16 1 CH_mbi_430 2 3 0.000145695
Medicago truncatula chr6 1 CH_mtr_544 2 2 0.0000410863
Oryza sativa ssp. japonica chr06 1 CH_osa_224 2 2 0.0000528123
Phaseolus vulgaris Chr04 1 CH_pvu_387 2 4 0.000440804
Vaccinium macrocarpon chr12_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_387 2 2 0.000557543
Vigna mungo CM024077.1 1 CH_vmu_310 2 2 0.000193842
Brassica carinata ChrC06 2 CH_bca_1023 2 2 0.00059854
Brassica oleracea C2 2 CH_bol_448 2 3 0.000980536
Eucalyptus grandis Chr10 2 CH_egr_353 3 3 0.00000000513834
Magnolia biondii Chr16 2 CH_mbi_430 2 3 0.000145695
Oryza sativa ssp. japonica chr06 2 CH_osa_224 2 2 0.0000528123
Phaseolus vulgaris Chr04 2 CH_pvu_387 2 4 0.000440804
Vaccinium macrocarpon chr12_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_387 2 2 0.000557543
Vigna mungo CM024077.1 2 CH_vmu_310 2 2 0.000193842

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001