Functional clusters

Information

  • Type MapMan
  • Description Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Salix brachista GWHAAZH00000011 1 CH_sbr_36 8 76 0.00000000000173882
Selenicereus undatus Scaffold_33675 1 CH_sun_165 3 10 0.000156544
Salix brachista GWHAAZH00000011 2 CH_sbr_36 8 76 0.00000000000173882
Selenicereus undatus Scaffold_33675 2 CH_sun_165 3 10 0.000156544

Available child term results

Ontology identifier Description Number of clusters
13.3.5.5.1.2.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.MSH4-MSH5 Holliday junction stabilizing heterodimer.component MSH4 4
13.3.5.5.1.2.2 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.MSH4-MSH5 Holliday junction stabilizing heterodimer.component MSH5 8
13.3.5.5.1.3 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.transverse filament protein of synaptonemal complex (ZYP1/ZIP1) 34
13.3.5.5.1.4.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.SHOC1-PTD heterodimer.component PTD 6
13.3.5.5.1.4.2 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.SHOC1-PTD heterodimer.endonuclease component SHOC1/ZIP2 8
13.3.5.5.1.5 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.accessory protein (SPO22/ZIP4) 6
13.3.5.5.1.6 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.double Holliday junction resolving protein (MLH3) 18
13.3.5.5.1.7 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.pachytene checkpoint protein (PCH2/CRC1) 4
13.3.5.5.1.9 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.accessory protein (BVF1) 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001