Functional clusters

Information

  • Type MapMan
  • Description Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.transverse filament protein of synaptonemal complex (ZYP1/ZIP1)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr13 1 CH_acertr_382 2 3 0.000211484
Actinidia chinensis Lachesis_group28 1 CH_ach_174 2 2 0.000325928
Actinidia chinensis Lachesis_group26 1 CH_ach_175 2 2 0.000325928
Avicennia marina ScioBoG_102833_HRSCAF_103052 1 CH_ama_49 2 2 0.0000862218
Arabidopsis thaliana Chr1 1 CH_ath_252 2 3 0.0000859463
Brassica carinata ChrB03 1 CH_bca_841 2 2 0.000320646
Ceratophyllum demersum 8 1 CH_cde_75 2 2 0.0000789796
Cardamine hirsuta Chr1 1 CH_chi_49 4 5 0.00000000000495383
Capsella rubella scaffold_1 1 CH_cru_302 2 3 0.000219338
Fragaria x ananassa Fvb5-3 1 CH_fan_126 3 4 0.0000000616296
Helianthus annuus HanXRQChr13 1 CH_han_725 2 7 0.000811422
Lupinus albus Lalb_Chr10 1 CH_lal_181 2 2 0.0000524824
Lonicera japonica GWHAAZE00000005 1 CH_lonja_429 3 58 0.000165729
Rosa chinensis RcHm_v2.0_Chr7 1 CH_rch_146 4 9 0.000000000119727
Sapria himalayana scaffold5_19632047 1 CH_shi_138 2 3 0.000171536
Trifolium pratense Tp57577_TGAC_v2_LG6 1 CH_tpr_290 2 2 0.000227092
Vigna mungo CM024073.1 1 CH_vmu_175 2 2 0.0000646141
Acer truncatum chr13 2 CH_acertr_382 2 3 0.000211484
Actinidia chinensis Lachesis_group28 2 CH_ach_174 2 2 0.000325928
Actinidia chinensis Lachesis_group26 2 CH_ach_175 2 2 0.000325928
Avicennia marina ScioBoG_102833_HRSCAF_103052 2 CH_ama_49 2 2 0.0000862218
Arabidopsis thaliana Chr1 2 CH_ath_252 2 3 0.0000859463
Brassica carinata ChrB03 2 CH_bca_841 2 2 0.000320646
Ceratophyllum demersum 8 2 CH_cde_75 2 2 0.0000789796
Cardamine hirsuta Chr1 2 CH_chi_49 4 5 0.00000000000495383
Capsella rubella scaffold_1 2 CH_cru_302 2 3 0.000219338
Fragaria x ananassa Fvb5-3 2 CH_fan_126 3 4 0.0000000616296
Helianthus annuus HanXRQChr13 2 CH_han_725 2 7 0.000811422
Lupinus albus Lalb_Chr10 2 CH_lal_181 2 2 0.0000524824
Lonicera japonica GWHAAZE00000005 2 CH_lonja_429 3 58 0.000165729
Rosa chinensis RcHm_v2.0_Chr7 2 CH_rch_146 4 9 0.000000000119727
Sapria himalayana scaffold5_19632047 2 CH_shi_138 2 3 0.000171536
Trifolium pratense Tp57577_TGAC_v2_LG6 2 CH_tpr_290 2 2 0.000227092
Vigna mungo CM024073.1 2 CH_vmu_175 2 2 0.0000646141

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001