Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p47060 Brassica napus
Aa31LG11G1940 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.971 Anthoceros agrestis
Actinidia13583 Actinidia chinensis
Actinidia24995 Actinidia chinensis
Ah.02g120680 Amaranthus hybridus
Ah.07g207660 Amaranthus hybridus
AL6G18000 Arabidopsis lyrata
AL6G18010 Arabidopsis lyrata
AL8G38150 Arabidopsis lyrata
Aqoxy5G03870 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2YP1UN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D3FWW6 Arachis hypogaea
AT5G07660 Arabidopsis thaliana
AT5G61460 Arabidopsis thaliana
ATR0317G120 Amborella trichopoda
Atru.chr1.752 Acer truncatum
Atru.chr1.753 Acer truncatum
AUR62002220 Chenopodium quinoa
AUR62015432 Chenopodium quinoa
AUR62042656 Chenopodium quinoa
AUR62042657 Chenopodium quinoa
BcaB05g21602 Brassica carinata
BcaC03g13191 Brassica carinata
BcaC06g33151 Brassica carinata
BcaC06g33236 Brassica carinata
BcaNung06187 Brassica carinata
BolC2t06288H Brassica oleracea
BolC7t45036H Brassica oleracea
BraA02t04928Z Brassica rapa
BraA03t13829Z Brassica rapa
C02p03240 Brassica napus
C07p45140 Brassica napus
CAN.G515.10 Capsicum annuum
CAN.G515.9 Capsicum annuum
CANSAT56G2947 Cannabis sativa
CARHR205510 Cardamine hirsuta
CARHR275220 Cardamine hirsuta
Carub.0006s0663 Capsella rubella
Carub.0008s2215 Capsella rubella
Ca_02789_v3 Cicer arietinum L.
Ca_02791_v3 Cicer arietinum L.
Ca_02792_v3 Cicer arietinum L.
Ca_27645_v3 Cicer arietinum L.
Ca_30729_v3 Cicer arietinum L.
Cc02_g04400 Coffea canephora
CDE11G0310 Ceratophyllum demersum
Cfa008151 Carpinus fangiana
Cfa025728 Carpinus fangiana
Ciclev10004204m.g Citrus clementina
CiPaw.03G020700 Carya illinoinensis
ClCG07G016820 Citrullus lanatus
COL.COLO4_14102 Corchorus olitorius
Cpa.g.sc121.1 Carica papaya
Cpa.g.sc121.4 Carica papaya
Cpa.g.sc121.6 Carica papaya
Cpa.g.sc1936.1 Carica papaya
Cre12.g525050 Chlamydomonas reinhardtii
Cre12.g525100 Chlamydomonas reinhardtii
CsaV3_4G004020 Cucumis sativus L.
CSS0036077 Camellia sinensis var. sinensis
DCAR_014618 Daucus carota
DCAR_014619 Daucus carota
Dinv06570 Davidia involucrata
Duzib084G0917 Durio zibethinus
ECA232G0935 Erigeron canadensis
EL10Ac3g05856 Beta vulgaris
Eucgr.A02900 Eucalyptus grandis
FAN01G0652 Fragaria x ananassa
FAN03G2333 Fragaria x ananassa
FAN03G3201 Fragaria x ananassa
FAN06G0596 Fragaria x ananassa
FAN06G2180 Fragaria x ananassa
FAN10G0409 Fragaria x ananassa
FAN10G1085 Fragaria x ananassa
FvH4_7g27291 Fragaria vesca
Glyma.09G229900 Glycine max
Glyma.12G006400 Glycine max
Gohir.A12G197800 Gossypium hirsutum
Gohir.D12G200300 Gossypium hirsutum
Gorai.008G215500 Gossypium raimondii
GSVIVG01013865001 Vitis vinifera
GSVIVG01014041001 Vitis vinifera
GSVIVG01014042001 Vitis vinifera
GSVIVG01014044001 Vitis vinifera
HanXRQChr01g0028141 Helianthus annuus
Haze_13892 Corylus avellana
Haze_26632 Corylus avellana
Hma1.2p1_0515F.1_g170460 Hydrangea macrophylla
HPP92_022323 Vanilla planifolia
HPP92_022331 Vanilla planifolia
HPP92_022332 Vanilla planifolia
HPP92_027283 Vanilla planifolia
Hund11836 Selenicereus undatus
Lalb_Chr19g0140351 Lupinus albus
Lj1C978G4 Lonicera japonica
Lj3g0020737 Lotus japonicus
Lsat_1_v5_gn_9_51940 Lactuca sativa
Manes.06G133600 Manihot esculenta
Mapoly0003s0057 Marchantia polymorpha
MCO11G708 Micromonas commoda
MD07G1252300 Malus domestica
Medtr1g018410 Medicago truncatula
Medtr4g036760 Medicago truncatula
Medtr4g061050 Medicago truncatula
MELO3C017663.2 Cucumis melo
Migut.F00486 Erythranthe guttata
MSTRG.8830 Avicennia marina
Nitab4.5_0000818g0230 Nicotiana tabacum
Nitab4.5_0003647g0020 Nicotiana tabacum
Nn6g33950 Nelumbo nucifera
Oeu021706.1 Olea europaea
Oeu021707.2 Olea europaea
Os09g0121000 Oryza sativa ssp. japonica
Os09g0121050 Oryza sativa ssp. japonica
Peaxi162Scf00167g00610 Petunia axillaris
PGR042G0822 Punica granatum
PGSC0003DMG400014287 Solanum tuberosum
PGSC0003DMG403030108 Solanum tuberosum
Phvul.011G007300 Phaseolus vulgaris
Potri.003G107700 Populus trichocarpa
Pp3c11_11190 Physcomitrium patens
PRCOL_00006025 Prasinoderma coloniale
Prupe.2G275800 Prunus persica
Psat3g047440 Pisum sativum
Psat7g194520 Pisum sativum
PSO063G1916 Papaver somniferum
PSO782G3243 Papaver somniferum
QL07p015796 Quercus lobata
QL09p005323 Quercus lobata
RcHm_v2.0_Chr1g0342881 Rosa chinensis
RcHm_v2.0_Chr1g0374131 Rosa chinensis
Rhsim03G0166000 Rhododendron simsii
Sabra03G0074500 Salix brachista
SalBow5G4122 Salvia bowleyana
Sc19g0002080 Simmondsia chinensis
Sed0013674 Sechium edule
SEGI_03190 Sequoiadendron giganteum
SGA_v2.0_scaffold2G01219 Striga asiatica
SHI13970 Sapria himalayana
SHI13977 Sapria himalayana
SMO117G0047 Selaginella moellendorffii
SMO137G0368 Selaginella moellendorffii
SMO164G0205 Selaginella moellendorffii
SMO202G0076 Selaginella moellendorffii
SMO302G0053 Selaginella moellendorffii
SMO364G0410 Selaginella moellendorffii
Solyc05g051680.4 Solanum lycopersicum
Sopen05g030150 Solanum pennellii
Sp2g24660 Schrenkiella parvula
Sp7g06190 Schrenkiella parvula
TAR375G0252 Trochodendron aralioides
Thecc.03G153700 Theobroma cacao
Thhalv10003566m.g Eutrema salsugineum
Thhalv10012532m.g Eutrema salsugineum
TPR.G2991 Trifolium pratense
TPR.G3678 Trifolium pratense
TWI14G1279 Tripterygium wilfordii
unitig_37.g12493 Utricularia gibba
vmacro06815 Vaccinium macrocarpon
VMungo1127G0288 Vigna mungo
Zm00001eb309160 Zea mays

User provided reference genes

Program Settings