Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p00570 Brassica napus
A08p23450 Brassica napus
Aa31LG6G15590 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.3400 Anthoceros agrestis
Actinidia20419 Actinidia chinensis
Actinidia32981 Actinidia chinensis
Ah.02g122880 Amaranthus hybridus
AL7G11880 Arabidopsis lyrata
Aqoxy6G00535_Aqoxy6G00536 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.CPIQ3I Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D1K6PT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ELEM58 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WI3M6V Arachis hypogaea
AT4G39680 Arabidopsis thaliana
ATR0118G020 Amborella trichopoda
ATR0307G099 Amborella trichopoda
ATR0564G189 Amborella trichopoda
ATR0584G055 Amborella trichopoda
ATR0584G106 Amborella trichopoda
ATR0829G029 Amborella trichopoda
Atru.chr4.269 Acer truncatum
AUR62002042 Chenopodium quinoa
AUR62003753 Chenopodium quinoa
BcaB03g12267 Brassica carinata
BcaC01g00310 Brassica carinata
BcaNung00888 Brassica carinata
BcaNung00890 Brassica carinata
BcaNung05548 Brassica carinata
BolC1t00073H Brassica oleracea
BolC3t20075H Brassica oleracea
BraA01t00064Z Brassica rapa
BraA08t34299Z Brassica rapa
C01p00700 Brassica napus
C03p78120 Brassica napus
CAN.G535.15 Capsicum annuum
CAN.G535.16 Capsicum annuum
CANSAT01G1571 Cannabis sativa
CARHR247040 Cardamine hirsuta
Carub.0007s0156 Capsella rubella
Ca_03650_v3 Cicer arietinum L.
Ca_16549_v3 Cicer arietinum L.
Ca_17708_v3 Cicer arietinum L.
CBR_g12758 Chara braunii
Cc00_g21700 Coffea canephora
Cc00_g29380 Coffea canephora
Cc10_g05910 Coffea canephora
CDE10G0491 Ceratophyllum demersum
CDE10G1172 Ceratophyllum demersum
Cfa002724 Carpinus fangiana
Ciclev10025009m.g Citrus clementina
CiPaw.03G137800 Carya illinoinensis
CiPaw.04G094000 Carya illinoinensis
CiPaw.04G095100 Carya illinoinensis
ClCG07G009410 Citrullus lanatus
COL.COLO4_11045 Corchorus olitorius
Cpa.g.sc231.10 Carica papaya
Cre03.g204950 Chlamydomonas reinhardtii
CsaV3_4G004840 Cucumis sativus L.
CsaV3_UNG186470 Cucumis sativus L.
CSS0032066 Camellia sinensis var. sinensis
DCAR_001011 Daucus carota
DCAR_011493 Daucus carota
Dinv13049 Davidia involucrata
Dinv13050 Davidia involucrata
Dinv16322 Davidia involucrata
Dinv21954 Davidia involucrata
Dinv44736 Davidia involucrata
Duzib147G1252 Durio zibethinus
Duzib187G0230 Durio zibethinus
ECA232G4146 Erigeron canadensis
ECA238G0951 Erigeron canadensis
ECA238G4732 Erigeron canadensis
EL10Ac6g15062 Beta vulgaris
Eucgr.I00375 Eucalyptus grandis
FAN19G1171 Fragaria x ananassa
FAN23G2259 Fragaria x ananassa
FAN26G1591 Fragaria x ananassa
FAN28G0934 Fragaria x ananassa
FvH4_1g21740 Fragaria vesca
Glyma.11G237500 Glycine max
Glyma.18G019700 Glycine max
Gohir.A02G133000 Gossypium hirsutum
Gohir.A02G133100 Gossypium hirsutum
Gohir.A12G091100 Gossypium hirsutum
Gohir.D03G044400 Gossypium hirsutum
Gohir.D03G044500 Gossypium hirsutum
Gohir.D12G094500 Gossypium hirsutum
Gorai.003G045500 Gossypium raimondii
Gorai.008G102900 Gossypium raimondii
Gorai.N021100 Gossypium raimondii
Gorai.N021200 Gossypium raimondii
GSVIVG01008977001 Vitis vinifera
GSVIVG01022190001 Vitis vinifera
HanXRQChr14g0445991 Helianthus annuus
HanXRQChr15g0471691 Helianthus annuus
HanXRQChr15g0485441 Helianthus annuus
Haze_25002 Corylus avellana
Hma1.2p1_0308F.1_g120050 Hydrangea macrophylla
HPP92_010948 Vanilla planifolia
HPP92_019110 Vanilla planifolia
Hund13648 Selenicereus undatus
Hund13649 Selenicereus undatus
Lalb_Chr08g0231231 Lupinus albus
Lalb_Chr11g0075221 Lupinus albus
Lalb_Chr23g0277271 Lupinus albus
Lj2A557T53 Lonicera japonica
Lj2C557T2 Lonicera japonica
Lj4g0008481 Lotus japonicus
Lj6g0021202 Lotus japonicus
Lsat_1_v5_gn_2_67741 Lactuca sativa
Lsat_1_v5_gn_4_139660 Lactuca sativa
Manes.13G077700 Manihot esculenta
Manes.13G090100 Manihot esculenta
Mapoly0042s0123 Marchantia polymorpha
MBI02_g37835_MAGBIO Magnolia biondii
MBI19_g28106_MAGBIO Magnolia biondii
MD01G1022700 Malus domestica
MD15G1329800 Malus domestica
Medtr3g087830 Medicago truncatula
Medtr8g091530 Medicago truncatula
MELO3C017577.2 Cucumis melo
Migut.L00096 Erythranthe guttata
MSTRG.15735 Avicennia marina
Nitab4.5_0000214g0200 Nicotiana tabacum
Nitab4.5_0000214g0210 Nicotiana tabacum
Nitab4.5_0000518g0020 Nicotiana tabacum
Nitab4.5_0006636g0020 Nicotiana tabacum
Nitab4.5_0006636g0030 Nicotiana tabacum
Nn1g05255 Nelumbo nucifera
Nn5g28992 Nelumbo nucifera
Oeu002183.3 Olea europaea
Oeu024564.1 Olea europaea
Oeu040742.1 Olea europaea
Os03g0383800 Oryza sativa ssp. japonica
Os07g0626200 Oryza sativa ssp. japonica
Peaxi162Scf00168g00311 Petunia axillaris
Peaxi162Scf00168g00410 Petunia axillaris
PGR004G1876 Punica granatum
PGSC0003DMG401027531 Solanum tuberosum
PGSC0003DMG402027531 Solanum tuberosum
Phvul.001G250000 Phaseolus vulgaris
Potri.005G080500 Populus trichocarpa
Potri.007G086900 Populus trichocarpa
Pp3c15_22110 Physcomitrium patens
Pp3c15_22112 Physcomitrium patens
Pp3c9_18590 Physcomitrium patens
Prupe.6G178400 Prunus persica
Psat5g088640 Pisum sativum
Psat7g089280 Pisum sativum
PSO210G5101 Papaver somniferum
PSO447G0249 Papaver somniferum
PSO541G0363 Papaver somniferum
PSO541G5252 Papaver somniferum
PSO675G1873 Papaver somniferum
PSO675G4532 Papaver somniferum
QL06p050576 Quercus lobata
RcHm_v2.0_Chr2g0115611 Rosa chinensis
Rhsim08G0008500 Rhododendron simsii
Rhsim10G0156100 Rhododendron simsii
Sabra05G0066000 Salix brachista
Sabra07G0071900 Salix brachista
SalBow5G4266 Salvia bowleyana
SalBow5G5124 Salvia bowleyana
SalBow5G5280 Salvia bowleyana
Sc16g0003070 Simmondsia chinensis
Sed0000989 Sechium edule
Sed0002631 Sechium edule
Sed0004526 Sechium edule
Sed0005319 Sechium edule
Sed0027467 Sechium edule
SEGI_20924 Sequoiadendron giganteum
SEGI_35400 Sequoiadendron giganteum
SGA_v2.0_scaffold34G13609 Striga asiatica
SGA_v2.0_scaffold47G17746 Striga asiatica
SHI11631 Sapria himalayana
SMO139G0084 Selaginella moellendorffii
Solyc04g072670.4 Solanum lycopersicum
Solyc04g072680.2 Solanum lycopersicum
Sopen04g028870 Solanum pennellii
Sopen04g028880 Solanum pennellii
Sp7g36210 Schrenkiella parvula
TAR376G0571 Trochodendron aralioides
TAR381G0933 Trochodendron aralioides
TAR625G0559 Trochodendron aralioides
TAR628G0181 Trochodendron aralioides
THA.LOC104807709 Tarenaya hassleriana
THA.LOC104824862 Tarenaya hassleriana
Thecc.01G108000 Theobroma cacao
Thhalv10024660m.g Eutrema salsugineum
TPR.G21050 Trifolium pratense
TPR.G2172 Trifolium pratense
TWI74G0010 Tripterygium wilfordii
TWI77G0890 Tripterygium wilfordii
unitig_32.g10692 Utricularia gibba
unitig_88.g27730 Utricularia gibba
vmacro12932 Vaccinium macrocarpon
vmacro18619 Vaccinium macrocarpon
VMungo1383G2292 Vigna mungo
Zm00001eb018610 Zea mays
Zm00001eb327960 Zea mays
Zm00001eb392330 Zea mays

User provided reference genes

Program Settings