Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
Aa31LG10G16540 Aethionema arabicum
Aa31LG1G28980 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1376 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_117.2696 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.5320 Anthoceros agrestis
Actinidia24823 Actinidia chinensis
Ah.08g213440 Amaranthus hybridus
Ah.15g093180 Amaranthus hybridus
AL4G47220 Arabidopsis lyrata
Aqoxy2G04061 Aquilegia oxysepala
Aqoxy5G00757 Aquilegia oxysepala
Aqoxy7G02733 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.011XRQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B57D01 Arachis hypogaea
AT2G47640 Arabidopsis thaliana
AT3G62840 Arabidopsis thaliana
ATR0706G006 Amborella trichopoda
Atru.chr11.834 Acer truncatum
Atru.chr5.1147 Acer truncatum
AUR62008622 Chenopodium quinoa
AUR62008674 Chenopodium quinoa
AUR62018541 Chenopodium quinoa
AUR62025572 Chenopodium quinoa
AUR62033149 Chenopodium quinoa
BcaB02g07316 Brassica carinata
BcaB02g08095 Brassica carinata
BcaC02g10316 Brassica carinata
BcaC07g40754 Brassica carinata
BcaC07g40757 Brassica carinata
BcaC07g42737 Brassica carinata
BcaC08g45241 Brassica carinata
BcaC08g46403 Brassica carinata
BcaNung06225 Brassica carinata
BolC4t24574H Brassica oleracea
BolC6t39413H Brassica oleracea
BraA04t15770Z Brassica rapa
C04p30400 Brassica napus
C06p43360 Brassica napus
CAN.G472.4 Capsicum annuum
CANSAT35G0165 Cannabis sativa
CARHR143040 Cardamine hirsuta
CARHR173110 Cardamine hirsuta
Carub.0004s3037 Capsella rubella
Carub.0005s2950 Capsella rubella
Ca_17251_v3 Cicer arietinum L.
CBR_g44940 Chara braunii
Cc01_g20840 Coffea canephora
Cc03_g13840 Coffea canephora
Cc06_g12850 Coffea canephora
Cc11_g06600 Coffea canephora
CDE02G3049 Ceratophyllum demersum
CDE02G4544 Ceratophyllum demersum
CDE08G0313 Ceratophyllum demersum
Cfa025938 Carpinus fangiana
Ciclev10017261m.g Citrus clementina
Ciclev10022968m.g Citrus clementina
CiPaw.08G095300 Carya illinoinensis
ClCG07G008500 Citrullus lanatus
Cpa.g.sc2.167 Carica papaya
Cpa.g.sc9.261 Carica papaya
Cre10.g453450 Chlamydomonas reinhardtii
CsaV3_4G005660 Cucumis sativus L.
CSS0016701 Camellia sinensis var. sinensis
CSS0037185 Camellia sinensis var. sinensis
CSS0040607 Camellia sinensis var. sinensis
DCAR_005793 Daucus carota
DCAR_029170 Daucus carota
Dinv00921 Davidia involucrata
Duzib133G0506 Durio zibethinus
Duzib248G0729 Durio zibethinus
Duzib251G0676 Durio zibethinus
ECA236G0463 Erigeron canadensis
ECA247G2756 Erigeron canadensis
EL10Ac7g17470 Beta vulgaris
EL10Ac9g22177 Beta vulgaris
Eucgr.H01111 Eucalyptus grandis
FAN04G2283 Fragaria x ananassa
FAN08G0307 Fragaria x ananassa
FAN13G2125 Fragaria x ananassa
FAN18G3048 Fragaria x ananassa
FAN18G3940 Fragaria x ananassa
FAN19G3169 Fragaria x ananassa
FAN23G1648 Fragaria x ananassa
FvH4_1g13940 Fragaria vesca
FvH4_5g18870 Fragaria vesca
Glyma.05G240800 Glycine max
Glyma.10G186300 Glycine max
Glyma.12G158300 Glycine max
Glyma.20G204200 Glycine max
Gohir.A05G307866 Gossypium hirsutum
Gohir.A13G027700 Gossypium hirsutum
Gohir.D05G308200 Gossypium hirsutum
Gohir.D13G026500 Gossypium hirsutum
Gorai.009G328400 Gossypium raimondii
Gorai.013G029800 Gossypium raimondii
GSVIVG01011627001 Vitis vinifera
GSVIVG01028015001 Vitis vinifera
HanXRQChr03g0075541 Helianthus annuus
HanXRQChr04g0114501 Helianthus annuus
HanXRQChr06g0163781 Helianthus annuus
HanXRQChr12g0361891 Helianthus annuus
Haze_04938 Corylus avellana
Haze_10849 Corylus avellana
Haze_26956 Corylus avellana
Hma1.2p1_0494F.1_g165180 Hydrangea macrophylla
Hma1.2p1_1471F.1_g285650 Hydrangea macrophylla
Hma1.2p1_1471F.1_g285655 Hydrangea macrophylla
HPP92_011491 Vanilla planifolia
Hund05428 Selenicereus undatus
Hund18161 Selenicereus undatus
Lalb_Chr05g0222071 Lupinus albus
Lalb_Chr09g0330771 Lupinus albus
Lalb_Chr16g0387431 Lupinus albus
Lj4g0004237 Lotus japonicus
Lj4g0026328 Lotus japonicus
Lsat_1_v5_gn_4_184221 Lactuca sativa
Manes.05G062000 Manihot esculenta
Manes.15G136700 Manihot esculenta
Manes.17G085700 Manihot esculenta
Mapoly0037s0122 Marchantia polymorpha
MBI19_g25358_MAGBIO Magnolia biondii
MCO01G056 Micromonas commoda
MD02G1152600 Malus domestica
MD06G1058300 Malus domestica
MD15G1267000 Malus domestica
Medtr5g097030 Medicago truncatula
Medtr8g105890 Medicago truncatula
MELO3C016382.2 Cucumis melo
Migut.B01153 Erythranthe guttata
Migut.B01154 Erythranthe guttata
Migut.D00220 Erythranthe guttata
Migut.O00746 Erythranthe guttata
MSTRG.18149 Avicennia marina
MSTRG.21635 Avicennia marina
Nitab4.5_0001879g0090 Nicotiana tabacum
Nitab4.5_0002640g0010 Nicotiana tabacum
Nn3g21491 Nelumbo nucifera
Nn4g25788 Nelumbo nucifera
Oeu046678.1 Olea europaea
Os01g0967000 Oryza sativa ssp. japonica
Os05g0314100 Oryza sativa ssp. japonica
Peaxi162Scf00001g00434 Petunia axillaris
Peaxi162Scf00332g00128 Petunia axillaris
Peaxi162Scf00399g00073 Petunia axillaris
PGR042G3902 Punica granatum
PGR142G0436 Punica granatum
PGSC0003DMG400011403 Solanum tuberosum
Phvul.002G324000 Phaseolus vulgaris
Phvul.011G008300 Phaseolus vulgaris
Potri.002G204300 Populus trichocarpa
Potri.014G045700 Populus trichocarpa
Potri.014G129100 Populus trichocarpa
Pp3c10_17640 Physcomitrium patens
Pp3c12_17690 Physcomitrium patens
Pp3c3_26020 Physcomitrium patens
PRCOL_00002699 Prasinoderma coloniale
Prupe.5G069500 Prunus persica
Prupe.7G149600 Prunus persica
Prupe.8G230200 Prunus persica
Psat4g004600 Pisum sativum
PSO170G3858 Papaver somniferum
PSO407G0057 Papaver somniferum
PSO541G0142 Papaver somniferum
PSO675G8449 Papaver somniferum
QL03p037965 Quercus lobata
QL12p028476 Quercus lobata
RcHm_v2.0_Chr2g0102251 Rosa chinensis
RcHm_v2.0_Chr7g0203251 Rosa chinensis
Rhsim01G0285100 Rhododendron simsii
Rhsim06G0047400 Rhododendron simsii
Rhsim13G0010100 Rhododendron simsii
Sabra02G0154900 Salix brachista
Sabra14G0095900 Salix brachista
SalBow1G5633 Salvia bowleyana
SalBow3G4558 Salvia bowleyana
Sc22g0002940 Simmondsia chinensis
Sed0005968 Sechium edule
Sed0009058 Sechium edule
SGA_v2.0_scaffold198G41149 Striga asiatica
SGA_v2.0_scaffold1G00364 Striga asiatica
Solyc09g075130.3 Solanum lycopersicum
Sopen09g029950 Solanum pennellii
Sp4g29580 Schrenkiella parvula
Sp5g00670 Schrenkiella parvula
TAR362G1299 Trochodendron aralioides
TAR365G0771 Trochodendron aralioides
TAR633G0971 Trochodendron aralioides
THA.LOC104802174 Tarenaya hassleriana
THA.LOC104817495 Tarenaya hassleriana
Thecc.02G307800 Theobroma cacao
Thhalv10001688m.g Eutrema salsugineum
Thhalv10006266m.g Eutrema salsugineum
TWI14G1361 Tripterygium wilfordii
TWI23G0966 Tripterygium wilfordii
TWI59G1425 Tripterygium wilfordii
unitig_22.g5240 Utricularia gibba
unitig_26.g10172 Utricularia gibba
unitig_8.g3705 Utricularia gibba
vmacro02450 Vaccinium macrocarpon
vmacro15012 Vaccinium macrocarpon
VMungo0251G2599 Vigna mungo
VMungo1127G0954 Vigna mungo
Zm00001eb077210 Zea mays
Zm00001eb426700 Zea mays

User provided reference genes

Program Settings