Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p02600 Brassica napus
A02p44570 Brassica napus
Aa31LG11G15300 Aethionema arabicum
Aa31LG1G14740 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.3695 Anthoceros agrestis
Actinidia06001 Actinidia chinensis
Actinidia17452 Actinidia chinensis
Actinidia22982 Actinidia chinensis
Actinidia36111 Actinidia chinensis
Ah.03g148710 Amaranthus hybridus
AL6G25280 Arabidopsis lyrata
AL8G45280 Arabidopsis lyrata
Aqoxy3G01155 Aquilegia oxysepala
Aqoxy6G02056 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0KLV1J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.4W5VYJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DS2IVM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GU90BI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QW55DR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W65EFT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WY0DQM Arachis hypogaea
AT5G14530 Arabidopsis thaliana
AT5G66240 Arabidopsis thaliana
ATR0481G012 Amborella trichopoda
ATR0585G146 Amborella trichopoda
Atru.chr6.2283 Acer truncatum
Atru.chr6.548 Acer truncatum
AUR62003374 Chenopodium quinoa
AUR62029456 Chenopodium quinoa
AUR62034493 Chenopodium quinoa
AUR62035476 Chenopodium quinoa
BcaB07g29671 Brassica carinata
BcaC03g13471 Brassica carinata
BcaC03g18424 Brassica carinata
BcaNung03148 Brassica carinata
BolC2t06641H Brassica oleracea
BolC2t12555H Brassica oleracea
BraA02t05228Z Brassica rapa
BraA02t09373Z Brassica rapa
C02p07080 Brassica napus
C02p64990 Brassica napus
CANSAT01G2746 Cannabis sativa
CANSAT64G0004 Cannabis sativa
CARHR198780 Cardamine hirsuta
CARHR281480 Cardamine hirsuta
Carub.0006s1271 Capsella rubella
Carub.0008s2825 Capsella rubella
Ca_08361_v3 Cicer arietinum L.
Ca_22621_v3 Cicer arietinum L.
CBR_g30894 Chara braunii
Cc07_g01790 Coffea canephora
Cc07_g10670 Coffea canephora
CDE06G0738 Ceratophyllum demersum
CDE07G1716 Ceratophyllum demersum
CDE07G1767 Ceratophyllum demersum
CDE08G1675 Ceratophyllum demersum
Cfa006970 Carpinus fangiana
Cfa007377 Carpinus fangiana
Ciclev10001790m.g Citrus clementina
Ciclev10003963m.g Citrus clementina
Ciclev10015851m.g Citrus clementina
Ciclev10021295m.g Citrus clementina
CiPaw.03G042700 Carya illinoinensis
CiPaw.08G131900 Carya illinoinensis
ClCG01G020270 Citrullus lanatus
ClCG10G013950 Citrullus lanatus
COL.COLO4_21915 Corchorus olitorius
COL.COLO4_29099 Corchorus olitorius
Cpa.g.sc6.245 Carica papaya
CsaV3_3G042740 Cucumis sativus L.
CsaV3_6G047060 Cucumis sativus L.
CSS0029758 Camellia sinensis var. sinensis
CSS0030764 Camellia sinensis var. sinensis
DCAR_015059 Daucus carota
DCAR_025995 Daucus carota
Dinv35102 Davidia involucrata
Dinv40083 Davidia involucrata
Duzib147G0985 Durio zibethinus
Duzib147G1250 Durio zibethinus
ECA232G4013 Erigeron canadensis
ECA238G0564 Erigeron canadensis
EL10Ac4g08656 Beta vulgaris
EL10Ac6g15474 Beta vulgaris
Eucgr.I02354 Eucalyptus grandis
Eucgr.J02235 Eucalyptus grandis
FAN05G4386 Fragaria x ananassa
FAN09G3109 Fragaria x ananassa
FAN14G0265 Fragaria x ananassa
FAN15G1729 Fragaria x ananassa
FAN18G1904 Fragaria x ananassa
FAN20G1391 Fragaria x ananassa
FAN23G2928 Fragaria x ananassa
FAN26G3102 Fragaria x ananassa
FAN28G2466 Fragaria x ananassa
FvH4_1g11900 Fragaria vesca
FvH4_6g51320 Fragaria vesca
Glyma.14G103000 Glycine max
Glyma.16G071900 Glycine max
Glyma.17G222400 Glycine max
Glyma.19G063300 Glycine max
Gohir.A02G170300 Gossypium hirsutum
Gohir.A10G102600 Gossypium hirsutum
Gohir.D03G009700 Gossypium hirsutum
Gohir.D10G086800 Gossypium hirsutum
Gorai.003G010000 Gossypium raimondii
Gorai.011G095000 Gossypium raimondii
GSVIVG01018786001 Vitis vinifera
GSVIVG01032417001 Vitis vinifera
HanXRQChr05g0145531 Helianthus annuus
HanXRQChr09g0255121 Helianthus annuus
HanXRQChr14g0441371 Helianthus annuus
Haze_03768 Corylus avellana
Haze_14731 Corylus avellana
Haze_26284 Corylus avellana
Hma1.2p1_0956F.1_g241390 Hydrangea macrophylla
Hma1.2p1_1291F.1_g273510 Hydrangea macrophylla
Hma1.2p1_2239F.1_g317819 Hydrangea macrophylla
HPP92_022113 Vanilla planifolia
HPP92_023132 Vanilla planifolia
Hund06772 Selenicereus undatus
Hund14042 Selenicereus undatus
Lalb_Chr02g0154261 Lupinus albus
Lalb_Chr14g0362731 Lupinus albus
Lj1g0015456 Lotus japonicus
Lj2A467T23 Lonicera japonica
Lj4g0016733 Lotus japonicus
Lj7A598T51 Lonicera japonica
Lsat_1_v5_gn_2_75881 Lactuca sativa
Lsat_1_v5_gn_4_183381 Lactuca sativa
Manes.02G104100 Manihot esculenta
Manes.17G112900 Manihot esculenta
Mapoly0109s0026 Marchantia polymorpha
MBI09_g35803_MAGBIO Magnolia biondii
MBI09_g45311_MAGBIO Magnolia biondii
MBI10_g39275_MAGBIO Magnolia biondii
MCO11G277 Micromonas commoda
MD02G1132900 Malus domestica
MD09G1028100 Malus domestica
MD15G1245700 Malus domestica
Medtr6g007797 Medicago truncatula
Medtr8g068320 Medicago truncatula
MELO3C007899.2 Cucumis melo
MELO3C009987.2 Cucumis melo
Migut.H02167 Erythranthe guttata
Migut.K01391 Erythranthe guttata
MSTRG.2710 Avicennia marina
Nitab4.5_0000327g0150 Nicotiana tabacum
Nitab4.5_0000419g0100 Nicotiana tabacum
Nitab4.5_0002385g0020 Nicotiana tabacum
Nitab4.5_0003271g0020 Nicotiana tabacum
Nitab4.5_0006286g0030 Nicotiana tabacum
Nn1g06294 Nelumbo nucifera
Nn3g16754 Nelumbo nucifera
Oeu048624.1 Olea europaea
Os05g0543300 Oryza sativa ssp. japonica
Os07g0589400 Oryza sativa ssp. japonica
Peaxi162Scf00083g00053 Petunia axillaris
Peaxi162Scf00700g00428 Petunia axillaris
PGR083G1667 Punica granatum
PGR119G1345 Punica granatum
Phvul.003G288000 Phaseolus vulgaris
Phvul.008G144400 Phaseolus vulgaris
Phvul.011G176500 Phaseolus vulgaris
Potri.001G345900 Populus trichocarpa
Potri.005G114600 Populus trichocarpa
Potri.017G071900 Populus trichocarpa
Pp3c19_4130 Physcomitrium patens
Pp3c21_4780 Physcomitrium patens
PRCOL_00003574 Prasinoderma coloniale
Prupe.3G290600 Prunus persica
Prupe.7G167800 Prunus persica
Psat2g083120 Pisum sativum
Psat3g163200 Pisum sativum
Psat4g117480 Pisum sativum
PSO017G1194 Papaver somniferum
PSO478G0575 Papaver somniferum
PSO541G5724 Papaver somniferum
PSO675G2492 Papaver somniferum
QL02p074872 Quercus lobata
QL06p032650 Quercus lobata
RcHm_v2.0_Chr2g0099491 Rosa chinensis
RcHm_v2.0_Chr2g0172941 Rosa chinensis
Rhsim08G0033800 Rhododendron simsii
Rhsim10G0018000 Rhododendron simsii
Sabra05G0093800 Salix brachista
SalBow3G2189 Salvia bowleyana
SalBow7G4293 Salvia bowleyana
Sc03g0007540 Simmondsia chinensis
Sc16g0002140 Simmondsia chinensis
Sed0003940 Sechium edule
Sed0007622 Sechium edule
Sed0013451 Sechium edule
SEGI_06316 Sequoiadendron giganteum
SEGI_06781 Sequoiadendron giganteum
SGA_v2.0_scaffold224G42983 Striga asiatica
SGA_v2.0_scaffold76G25149 Striga asiatica
SHI08555 Sapria himalayana
SHI08556 Sapria himalayana
SHI23217 Sapria himalayana
SHI23223 Sapria himalayana
SMO171G0024 Selaginella moellendorffii
SMO171G0057 Selaginella moellendorffii
SMO353G0140 Selaginella moellendorffii
SMO353G0368 Selaginella moellendorffii
Solyc02g083940.3 Solanum lycopersicum
Solyc12g035360.2 Solanum lycopersicum
Sopen02g028720 Solanum pennellii
Sopen12g015070 Solanum pennellii
Sp2g30450 Schrenkiella parvula
Sp6g29480 Schrenkiella parvula
TAR381G1416 Trochodendron aralioides
TAR622G0975 Trochodendron aralioides
THA.LOC104821325 Tarenaya hassleriana
THA.LOC104822400 Tarenaya hassleriana
Thecc.01G019400 Theobroma cacao
Thecc.04G016000 Theobroma cacao
Thhalv10004561m.g Eutrema salsugineum
Thhalv10014091m.g Eutrema salsugineum
TPR.G1093 Trifolium pratense
TPR.G25772 Trifolium pratense
TPR.G29826 Trifolium pratense
TWI09G0421 Tripterygium wilfordii
TWI56G0497 Tripterygium wilfordii
unitig_899.g14711 Utricularia gibba
vmacro05859 Vaccinium macrocarpon
vmacro18416 Vaccinium macrocarpon
VMungo0647G1740 Vigna mungo
VMungo1383G2954 Vigna mungo
Zm00001eb072520 Zea mays
Zm00001eb294550 Zea mays
Zm00001eb298490 Zea mays
Zm00001eb342540 Zea mays

User provided reference genes

Program Settings