Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p42030 Brassica napus
A03p02490 Brassica napus
A09p48630 Brassica napus
Aa31LG10G10650 Aethionema arabicum
Aa31LG11G7020 Aethionema arabicum
Aa31LG3G2700 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.1235 Anthoceros agrestis
Actinidia02911 Actinidia chinensis
Actinidia38144 Actinidia chinensis
Ah.10g037130 Amaranthus hybridus
Ah.13g076760 Amaranthus hybridus
AL3G21490 Arabidopsis lyrata
AL3G22890 Arabidopsis lyrata
AL5G36840 Arabidopsis lyrata
AL6G15920 Arabidopsis lyrata
Aqoxy1G00821 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1G1YD8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QU85I8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YN8NC1 Arachis hypogaea
AT3G10160 Arabidopsis thaliana
AT3G55630 Arabidopsis thaliana
AT5G05980 Arabidopsis thaliana
ATR0559G016 Amborella trichopoda
ATR0721G042 Amborella trichopoda
Atru.chr1.1242 Acer truncatum
Atru.chr1.1243 Acer truncatum
Atru.chr12.297 Acer truncatum
Atru.chr12.335 Acer truncatum
AUR62012149 Chenopodium quinoa
AUR62026132 Chenopodium quinoa
AUR62030397 Chenopodium quinoa
AUR62040687 Chenopodium quinoa
BcaB01g00073 Brassica carinata
BcaB01g05749 Brassica carinata
BcaB01g05967 Brassica carinata
BcaB04g21228 Brassica carinata
BcaB05g21687 Brassica carinata
BcaC06g32308 Brassica carinata
BcaC06g32312 Brassica carinata
BcaC07g39893 Brassica carinata
BcaC09g48114 Brassica carinata
BcaNung06229 Brassica carinata
BolC1t05419H Brassica oleracea
BolC2t06221H Brassica oleracea
BolC3t12838H Brassica oleracea
BolC8t50720H Brassica oleracea
BolC9t59840H Brassica oleracea
BraA01t04271Z Brassica rapa
BraA03t09610Z Brassica rapa
BraA09t40315Z Brassica rapa
BraA10t45076Z Brassica rapa
C02p02540 Brassica napus
C02p30030 Brassica napus
C03p02830 Brassica napus
C08p30970 Brassica napus
CAN.G1237.17 Capsicum annuum
CAN.G505.16 Capsicum annuum
CAN.G945.9 Capsicum annuum
CANSAT56G0693 Cannabis sativa
CANSAT80G1783 Cannabis sativa
CARHR084640 Cardamine hirsuta
CARHR129010 Cardamine hirsuta
CARHR165690 Cardamine hirsuta
CARHR207230 Cardamine hirsuta
Carub.0003s0931 Capsella rubella
Carub.0005s2238 Capsella rubella
Carub.0006s0487 Capsella rubella
Ca_07493_v3 Cicer arietinum L.
Ca_11914_v3 Cicer arietinum L.
Ca_16501_v3 Cicer arietinum L.
Ca_17117_v3 Cicer arietinum L.
Ca_17120_v3 Cicer arietinum L.
Ca_25276_v3 Cicer arietinum L.
Ca_30976_v3 Cicer arietinum L.
CBR_g18739 Chara braunii
Cc02_g07310 Coffea canephora
Cc06_g18390 Coffea canephora
CDE02G1800 Ceratophyllum demersum
CDE04G0745 Ceratophyllum demersum
CDE04G1242 Ceratophyllum demersum
Cfa016751 Carpinus fangiana
Ciclev10004610m.g Citrus clementina
Ciclev10031375m.g Citrus clementina
Ciclev10033371m.g Citrus clementina
CiPaw.02G187400 Carya illinoinensis
CiPaw.09G042500 Carya illinoinensis
CiPaw.10G036800 Carya illinoinensis
ClCG09G018830 Citrullus lanatus
ClCG10G015570 Citrullus lanatus
COL.COLO4_25528 Corchorus olitorius
Cpa.g.sc120.13 Carica papaya
Cpa.g.sc776.1 Carica papaya
Cre05.g239067 Chlamydomonas reinhardtii
Cre05.g239100 Chlamydomonas reinhardtii
CsaV3_3G040860 Cucumis sativus L.
CsaV3_5G037300 Cucumis sativus L.
CSS0005230 Camellia sinensis var. sinensis
CSS0050084 Camellia sinensis var. sinensis
DCAR_020536 Daucus carota
DCAR_024867 Daucus carota
Dinv16265 Davidia involucrata
Dinv30294 Davidia involucrata
Dinv34467 Davidia involucrata
Duzib114G0737 Durio zibethinus
ECA232G0943 Erigeron canadensis
ECA233G4014 Erigeron canadensis
ECA247G1452 Erigeron canadensis
EL10Ac2g04684 Beta vulgaris
EL10Ac3g07165 Beta vulgaris
Eucgr.A02294 Eucalyptus grandis
Eucgr.J02122 Eucalyptus grandis
FAN01G0513 Fragaria x ananassa
FAN02G3099 Fragaria x ananassa
FAN03G3127 Fragaria x ananassa
FAN04G1727 Fragaria x ananassa
FAN05G2308 Fragaria x ananassa
FAN06G1256 Fragaria x ananassa
FAN06G1330 Fragaria x ananassa
FAN14G5289 Fragaria x ananassa
FAN18G2887 Fragaria x ananassa
FvH4_6g24860 Fragaria vesca
FvH4_7g23490 Fragaria vesca
Glyma.02G191500 Glycine max
Glyma.02G251400 Glycine max
Glyma.10G105400 Glycine max
Glyma.14G065400 Glycine max
Glyma.18G034200 Glycine max
Gohir.A06G165900 Gossypium hirsutum
Gohir.D06G171200 Gossypium hirsutum
Gohir.D06G171300 Gossypium hirsutum
GSVIVG01016464001 Vitis vinifera
GSVIVG01033555001 Vitis vinifera
GSVIVG01038496001 Vitis vinifera
HanXRQChr08g0221221 Helianthus annuus
HanXRQChr09g0247031 Helianthus annuus
HanXRQChr10g0298631 Helianthus annuus
Haze_17131 Corylus avellana
Haze_19753 Corylus avellana
Haze_26977 Corylus avellana
Hma1.2p1_0026F.1_g016500 Hydrangea macrophylla
Hma1.2p1_0039F.1_g024730 Hydrangea macrophylla
Hma1.2p1_0056F.1_g031650 Hydrangea macrophylla
Hma1.2p1_0222F.1_g093470 Hydrangea macrophylla
HPP92_006713 Vanilla planifolia
HPP92_018157 Vanilla planifolia
HPP92_018172 Vanilla planifolia
Hund16049 Selenicereus undatus
Hund19123 Selenicereus undatus
Hund24657 Selenicereus undatus
Lalb_Chr04g0250971 Lupinus albus
Lalb_Chr15g0084491 Lupinus albus
Lj5g0016803 Lotus japonicus
Lj6g0027495 Lotus japonicus
Lj8C77T9 Lonicera japonica
LjContig00141g0013846 Lotus japonicus
Lsat_1_v5_gn_2_60481 Lactuca sativa
Lsat_1_v5_gn_8_126841 Lactuca sativa
Lsat_1_v5_gn_8_14661 Lactuca sativa
Lsat_1_v5_gn_9_31960 Lactuca sativa
Lsat_1_v5_gn_9_63441 Lactuca sativa
Manes.08G053400 Manihot esculenta
Manes.09G016200 Manihot esculenta
Manes.10G022900 Manihot esculenta
Manes.10G023400 Manihot esculenta
Mapoly0010s0086 Marchantia polymorpha
MBI05_g02647_MAGBIO Magnolia biondii
MCO10G081 Micromonas commoda
MD01G1140600 Malus domestica
MD07G1204900 Malus domestica
MD14G1081100 Malus domestica
Medtr1g051385 Medicago truncatula
Medtr3g069160 Medicago truncatula
Medtr3g069180 Medicago truncatula
Medtr5g081250 Medicago truncatula
MELO3C009821.2 Cucumis melo
MELO3C021530.2 Cucumis melo
Migut.F01300 Erythranthe guttata
Migut.J01699 Erythranthe guttata
MSTRG.6400 Avicennia marina
Nitab4.5_0000647g0200 Nicotiana tabacum
Nitab4.5_0000826g0240 Nicotiana tabacum
Nitab4.5_0001618g0320 Nicotiana tabacum
Nitab4.5_0006999g0050 Nicotiana tabacum
Nn2g11262 Nelumbo nucifera
Nn2g15056 Nelumbo nucifera
Oeu006928.1 Olea europaea
Os03g0111100 Oryza sativa ssp. japonica
Os10g0503200 Oryza sativa ssp. japonica
Peaxi162Scf00130g01018 Petunia axillaris
Peaxi162Scf00164g01517 Petunia axillaris
PGR004G2299 Punica granatum
PGR044G0660 Punica granatum
PGSC0003DMG400027193 Solanum tuberosum
Phvul.007G249200 Phaseolus vulgaris
Phvul.008G230100 Phaseolus vulgaris
Potri.006G045400 Populus trichocarpa
Potri.008G060600 Populus trichocarpa
Potri.010G197800 Populus trichocarpa
Potri.016G041800 Populus trichocarpa
Pp3c23_670 Physcomitrium patens
Pp3c24_9100 Physcomitrium patens
PRCOL_00006377 Prasinoderma coloniale
Prupe.2G241100 Prunus persica
Prupe.7G049800 Prunus persica
Psat5g128680 Pisum sativum
Psat6g118120 Pisum sativum
Psat7g258800 Pisum sativum
PSO339G2799 Papaver somniferum
PSO339G3002 Papaver somniferum
PSO384G2321 Papaver somniferum
PSO384G2968 Papaver somniferum
PSO541G1624 Papaver somniferum
PSO675G4234 Papaver somniferum
QL07p004945 Quercus lobata
QL07p004976 Quercus lobata
QL08p061707 Quercus lobata
QL08p061736 Quercus lobata
RcHm_v2.0_Chr1g0368621 Rosa chinensis
RcHm_v2.0_Chr3g0484551 Rosa chinensis
RcHm_v2.0_Chr6g0278311 Rosa chinensis
Rhsim03G0136800 Rhododendron simsii
Rhsim04G0108100 Rhododendron simsii
Rhsim09G0169300 Rhododendron simsii
Sabra06G0031100 Salix brachista
Sabra08G0044700 Salix brachista
Sabra10G0152300 Salix brachista
Sabra16G0047500 Salix brachista
SalBow6G0138 Salvia bowleyana
SalBow6G0774 Salvia bowleyana
SalBow6G3532 Salvia bowleyana
Sc10g0001890 Simmondsia chinensis
Sc25g0005380 Simmondsia chinensis
Sed0000163 Sechium edule
Sed0025441 Sechium edule
Sed0025459 Sechium edule
SEGI_03942 Sequoiadendron giganteum
SEGI_21448 Sequoiadendron giganteum
SEGI_23725 Sequoiadendron giganteum
SEGI_37873 Sequoiadendron giganteum
SGA_v2.0_scaffold105G30347 Striga asiatica
SGA_v2.0_scaffold108G31006 Striga asiatica
SGA_v2.0_scaffold2G00988 Striga asiatica
SGA_v2.0_scaffold318G48508 Striga asiatica
SHI03642 Sapria himalayana
SHI03643 Sapria himalayana
SHI03646 Sapria himalayana
SHI14955 Sapria himalayana
SHI23193 Sapria himalayana
SMO140G0015 Selaginella moellendorffii
SMO222G0007 Selaginella moellendorffii
SMO230G0070 Selaginella moellendorffii
SMO367G0088 Selaginella moellendorffii
SMO367G0248 Selaginella moellendorffii
Solyc04g016550.4 Solanum lycopersicum
Solyc05g052920.4 Solanum lycopersicum
Sopen04g008630 Solanum pennellii
Sopen05g031430 Solanum pennellii
Sp3g08440 Schrenkiella parvula
Sp5g06840 Schrenkiella parvula
Sp6g36910 Schrenkiella parvula
TAR633G1227 Trochodendron aralioides
TAR636G1361 Trochodendron aralioides
TAR636G1929 Trochodendron aralioides
THA.LOC104816401 Tarenaya hassleriana
THA.LOC104824300 Tarenaya hassleriana
Thecc.05G144800 Theobroma cacao
Thecc.10G034300 Theobroma cacao
Thhalv10010319m.g Eutrema salsugineum
Thhalv10013069m.g Eutrema salsugineum
Thhalv10020301m.g Eutrema salsugineum
TPR.G10326 Trifolium pratense
TPR.G19653 Trifolium pratense
TPR.G25838 Trifolium pratense
TPR.G25852 Trifolium pratense
TPR.G40812 Trifolium pratense
TWI38G0361 Tripterygium wilfordii
TWI53G1708 Tripterygium wilfordii
TWI63G0421 Tripterygium wilfordii
unitig_27.g25070 Utricularia gibba
unitig_37.g12703 Utricularia gibba
unitig_744.g24617 Utricularia gibba
vmacro07029 Vaccinium macrocarpon
vmacro09042 Vaccinium macrocarpon
vmacro10209 Vaccinium macrocarpon
VMungo0647G0039 Vigna mungo
VMungo0720G2943 Vigna mungo
Zm00001eb044170 Zea mays
Zm00001eb299330 Zea mays
Zm00001eb404110 Zea mays

User provided reference genes

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