Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p13110 Brassica napus
A04p15720 Brassica napus
A04p35140 Brassica napus
A06p06270 Brassica napus
Aa31LG1G29370 Aethionema arabicum
Aa31LG2G19910 Aethionema arabicum
Aa31LG3G1570 Aethionema arabicum
Aa31LG9G1500 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.5250 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.1276 Anthoceros agrestis
Actinidia04976 Actinidia chinensis
Actinidia21079 Actinidia chinensis
Actinidia24855 Actinidia chinensis
Actinidia33051 Actinidia chinensis
Ah.02g124820 Amaranthus hybridus
Ah.11g046040 Amaranthus hybridus
Ah.11g046050 Amaranthus hybridus
Ah.15g093710 Amaranthus hybridus
AL39U10130 Arabidopsis lyrata
AL4G47530 Arabidopsis lyrata
AL6G53110 Arabidopsis lyrata
AL7G49830 Arabidopsis lyrata
Aqoxy2G03131 Aquilegia oxysepala
Aqoxy3G00939 Aquilegia oxysepala
Aqoxy3G03054 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0KV6DQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.0X3R4P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.11QJS0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HF93XK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IU518F Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KR1ZKD Arachis hypogaea
AT2G47940 Arabidopsis thaliana
AT5G40200 Arabidopsis thaliana
ATR0706G098 Amborella trichopoda
ATR1149G128 Amborella trichopoda
Atru.chr5.1280 Acer truncatum
Atru.chr6.2172 Acer truncatum
Atru.chr9.2425 Acer truncatum
AUR62008261 Chenopodium quinoa
AUR62008262 Chenopodium quinoa
AUR62008263 Chenopodium quinoa
AUR62031021 Chenopodium quinoa
AUR62031022 Chenopodium quinoa
AUR62031023 Chenopodium quinoa
AUR62031024 Chenopodium quinoa
AUR62034617 Chenopodium quinoa
AUR62036655 Chenopodium quinoa
BcaB06g27456 Brassica carinata
BcaB06g27749 Brassica carinata
BcaC02g08824 Brassica carinata
BolC4t26274H Brassica oleracea
BolC4t26595H Brassica oleracea
BolC4t28784H Brassica oleracea
BraA04t16970Z Brassica rapa
BraA04t17205Z Brassica rapa
BraA04t18950Z Brassica rapa
C04p46860 Brassica napus
C04p50020 Brassica napus
CAN.G1146.3 Capsicum annuum
CAN.G29.8 Capsicum annuum
CAN.G426.22 Capsicum annuum
CANSAT25G0242 Cannabis sativa
CANSAT64G2543 Cannabis sativa
CARHR143330 Cardamine hirsuta
CARHR261960 Cardamine hirsuta
Carub.0004s3066 Capsella rubella
Carub.0007s3545 Capsella rubella
Ca_10376_v3 Cicer arietinum L.
Ca_21899_v3 Cicer arietinum L.
CBR_g12798 Chara braunii
CBR_g2905 Chara braunii
CBR_g2906 Chara braunii
CBR_g50405 Chara braunii
Cc01_g20240 Coffea canephora
Cc04_g12960 Coffea canephora
Cc07_g02490 Coffea canephora
Cc11_g04490 Coffea canephora
CDE02G4599 Ceratophyllum demersum
CDE05G1821 Ceratophyllum demersum
CDE09G0704 Ceratophyllum demersum
Cfa006035 Carpinus fangiana
Cfa007455 Carpinus fangiana
Cfa019083 Carpinus fangiana
Ciclev10014711m.g Citrus clementina
Ciclev10019344m.g Citrus clementina
Ciclev10019366m.g Citrus clementina
CiPaw.03G035700 Carya illinoinensis
CiPaw.04G023400 Carya illinoinensis
CiPaw.07G100100 Carya illinoinensis
CiPaw.08G100400 Carya illinoinensis
CiPaw.11G030000 Carya illinoinensis
ClCG01G014060 Citrullus lanatus
ClCG09G006500 Citrullus lanatus
COL.COLO4_08029 Corchorus olitorius
COL.COLO4_24767 Corchorus olitorius
COL.COLO4_32015 Corchorus olitorius
Cpa.g.c45474 Carica papaya
Cpa.g.sc110.45 Carica papaya
Cpa.g.sc26.19 Carica papaya
Cpa.g.sc9.162 Carica papaya
Cre03.g200655 Chlamydomonas reinhardtii
Cre13.g579901 Chlamydomonas reinhardtii
CsaV3_1G008290 Cucumis sativus L.
CsaV3_7G028270 Cucumis sativus L.
CSS0005886 Camellia sinensis var. sinensis
CSS0027822 Camellia sinensis var. sinensis
DCAR_002788 Daucus carota
DCAR_011230 Daucus carota
DCAR_015035 Daucus carota
DCAR_016495 Daucus carota
DCAR_021564 Daucus carota
Dinv11299 Davidia involucrata
Dinv20684 Davidia involucrata
Dinv32994 Davidia involucrata
Dinv35036 Davidia involucrata
Duzib084G1068 Durio zibethinus
Duzib147G1341 Durio zibethinus
Duzib205G1883 Durio zibethinus
Duzib211G0291 Durio zibethinus
ECA232G4456 Erigeron canadensis
ECA246G4001 Erigeron canadensis
ECA248G1218 Erigeron canadensis
EL10Ac5g10805 Beta vulgaris
EL10Ac5g10806 Beta vulgaris
EL10Ac5g10807 Beta vulgaris
EL10Ac7g17369 Beta vulgaris
Eucgr.H01212 Eucalyptus grandis
Eucgr.I01831 Eucalyptus grandis
Eucgr.K02868 Eucalyptus grandis
Eucgr.L02072 Eucalyptus grandis
FAN02G0262 Fragaria x ananassa
FAN02G2693 Fragaria x ananassa
FAN04G1070 Fragaria x ananassa
FAN05G2223 Fragaria x ananassa
FAN08G0612 Fragaria x ananassa
FAN09G4278 Fragaria x ananassa
FAN13G1999 Fragaria x ananassa
FAN15G2455 Fragaria x ananassa
FAN18G3154 Fragaria x ananassa
FAN18G3383 Fragaria x ananassa
FAN20G1810 Fragaria x ananassa
FAN24G2753 Fragaria x ananassa
FAN27G1755 Fragaria x ananassa
FvH4_2g24740 Fragaria vesca
FvH4_5g04990 Fragaria vesca
FvH4_6g50350 Fragaria vesca
Glyma.01G077600 Glycine max
Glyma.02G152400 Glycine max
Glyma.05G035300 Glycine max
Glyma.10G021800 Glycine max
Glyma.17G092000 Glycine max
Gohir.A07G062000 Gossypium hirsutum
Gohir.A07G062100 Gossypium hirsutum
Gohir.A07G062200 Gossypium hirsutum
Gohir.A11G068000 Gossypium hirsutum
Gohir.A12G008600 Gossypium hirsutum
Gohir.D07G066701 Gossypium hirsutum
Gohir.D07G066801 Gossypium hirsutum
Gohir.D11G071800 Gossypium hirsutum
Gohir.D12G008301 Gossypium hirsutum
Gorai.001G070400 Gossypium raimondii
Gorai.007G077100 Gossypium raimondii
Gorai.008G008100 Gossypium raimondii
GSVIVG01007803001 Vitis vinifera
GSVIVG01011007001 Vitis vinifera
GSVIVG01024784001 Vitis vinifera
GSVIVG01032512001 Vitis vinifera
HanXRQChr01g0002771 Helianthus annuus
HanXRQChr05g0155551 Helianthus annuus
HanXRQChr09g0265991 Helianthus annuus
Haze_04813 Corylus avellana
Haze_07477 Corylus avellana
Haze_14644 Corylus avellana
Haze_21615 Corylus avellana
Hma1.2p1_0176F.1_g077780 Hydrangea macrophylla
Hma1.2p1_0252F.1_g102740 Hydrangea macrophylla
Hma1.2p1_0399F.1_g144200 Hydrangea macrophylla
Hma1.2p1_0469F.1_g158840 Hydrangea macrophylla
Hma1.2p1_0697F.1_g204900 Hydrangea macrophylla
Hma1.2p1_0697F.1_g204910 Hydrangea macrophylla
Hma1.2p1_1101F.1_g257180 Hydrangea macrophylla
Hma1.2p1_1283F.1_g272830 Hydrangea macrophylla
Hma1.2p1_1995F.1_g310350 Hydrangea macrophylla
Hma1.2p1_2458F.1_g322510 Hydrangea macrophylla
HPP92_015999 Vanilla planifolia
HPP92_016057 Vanilla planifolia
HPP92_018296 Vanilla planifolia
HPP92_027889 Vanilla planifolia
Hund02722 Selenicereus undatus
Hund05375 Selenicereus undatus
Hund12480 Selenicereus undatus
Lalb_Chr02g0143091 Lupinus albus
Lalb_Chr06g0163301 Lupinus albus
Lalb_Chr07g0182631 Lupinus albus
Lalb_Chr12g0208111 Lupinus albus
Lalb_Chr13g0297911 Lupinus albus
Lj2A1185G18 Lonicera japonica
Lj4g0025156 Lotus japonicus
Lj5g0010897 Lotus japonicus
Lj7A412T33 Lonicera japonica
Lj9A451G97 Lonicera japonica
Lsat_1_v5_gn_4_181721 Lactuca sativa
Lsat_1_v5_gn_5_17020 Lactuca sativa
Lsat_1_v5_gn_5_188780 Lactuca sativa
Lsat_1_v5_gn_8_77500 Lactuca sativa
Manes.01G213700 Manihot esculenta
Manes.14G068600 Manihot esculenta
Manes.17G124100 Manihot esculenta
Mapoly0005s0061 Marchantia polymorpha
Mapoly0024s0090 Marchantia polymorpha
MCO05G290 Micromonas commoda
MD00G1056100 Malus domestica
MD06G1178100 Malus domestica
MD06G1178200 Malus domestica
MD09G1037000 Malus domestica
MD11G1298100 Malus domestica
MD14G1184600 Malus domestica
MD17G1038400 Malus domestica
MD17G1038500 Malus domestica
Medtr1g088980 Medicago truncatula
Medtr4g106730 Medicago truncatula
MELO3C002245.2 Cucumis melo
MELO3C015895.2 Cucumis melo
Migut.D00229 Erythranthe guttata
Migut.D01778 Erythranthe guttata
Migut.I00035 Erythranthe guttata
MSTRG.23106 Avicennia marina
Nitab4.5_0000025g0620 Nicotiana tabacum
Nitab4.5_0000824g0130 Nicotiana tabacum
Nitab4.5_0001724g0090 Nicotiana tabacum
Nitab4.5_0002093g0190 Nicotiana tabacum
Nitab4.5_0002708g0030 Nicotiana tabacum
Nitab4.5_0004150g0040 Nicotiana tabacum
Nitab4.5_0004150g0070 Nicotiana tabacum
Nitab4.5_0004348g0100 Nicotiana tabacum
Nitab4.5_0004753g0040 Nicotiana tabacum
Nn2g11912 Nelumbo nucifera
Nn3g16950 Nelumbo nucifera
Nn3g16951 Nelumbo nucifera
Nn3g21277 Nelumbo nucifera
Nn4g22862 Nelumbo nucifera
Oeu002705.2 Olea europaea
Oeu014506.1 Olea europaea
Oeu031514.3 Olea europaea
Os05g0147500 Oryza sativa ssp. japonica
Os06g0234100 Oryza sativa ssp. japonica
Peaxi162Scf00067g00415 Petunia axillaris
Peaxi162Scf00496g00075 Petunia axillaris
Peaxi162Scf00700g00067 Petunia axillaris
Peaxi162Scf01039g00110 Petunia axillaris
PGR044G1603 Punica granatum
PGR119G0738 Punica granatum
PGR142G1186 Punica granatum
PGSC0003DMG400021960 Solanum tuberosum
PGSC0003DMG401019374 Solanum tuberosum
PGSC0003DMG401024031 Solanum tuberosum
PGSC0003DMG402019374 Solanum tuberosum
Phvul.003G198000 Phaseolus vulgaris
Phvul.007G166500 Phaseolus vulgaris
Phvul.008G153200 Phaseolus vulgaris
Potri.002G207200 Populus trichocarpa
Potri.012G077900 Populus trichocarpa
Potri.014G135200 Populus trichocarpa
Potri.015G073100 Populus trichocarpa
Pp3c13_1020 Physcomitrium patens
Pp3c13_1290 Physcomitrium patens
Pp3c13_1300 Physcomitrium patens
Pp3c3_290 Physcomitrium patens
Pp3c8_7470 Physcomitrium patens
PRCOL_00002011 Prasinoderma coloniale
PRCOL_00003729 Prasinoderma coloniale
PRCOL_00003861 Prasinoderma coloniale
Prupe.3G280500 Prunus persica
Prupe.3G280600 Prunus persica
Prupe.5G177300 Prunus persica
Prupe.8G252400 Prunus persica
Psat2g151200 Pisum sativum
Psat4g057320 Pisum sativum
Psat6g167960 Pisum sativum
PSO017G2799 Papaver somniferum
PSO063G2618 Papaver somniferum
PSO170G1469 Papaver somniferum
PSO170G3155 Papaver somniferum
PSO445G0021 Papaver somniferum
PSO478G2752 Papaver somniferum
PSO675G2051 Papaver somniferum
PSO832G0632 Papaver somniferum
QL02p077386 Quercus lobata
QL10p013502 Quercus lobata
QL12p023782 Quercus lobata
QL12p023996 Quercus lobata
QL12p024107 Quercus lobata
RcHm_v2.0_Chr1g0327041 Rosa chinensis
RcHm_v2.0_Chr2g0170661 Rosa chinensis
RcHm_v2.0_Chr2g0170671 Rosa chinensis
RcHm_v2.0_Chr6g0292561 Rosa chinensis
RcHm_v2.0_Chr7g0194051 Rosa chinensis
Rhsim01G0280000 Rhododendron simsii
Rhsim08G0169400 Rhododendron simsii
Rhsim10G0026000 Rhododendron simsii
Rhsim13G0038400 Rhododendron simsii
Rhsim13G0039900 Rhododendron simsii
Rhsim13G0040800 Rhododendron simsii
Rhsim13G0041000 Rhododendron simsii
Sabra02G0149600 Salix brachista
Sabra12G0055700 Salix brachista
Sabra14G0100800 Salix brachista
Sabra15G0097300 Salix brachista
SalBow3G4022 Salvia bowleyana
SalBow6G1588 Salvia bowleyana
Sc05g0004630 Simmondsia chinensis
Sc06g0002560 Simmondsia chinensis
Sed0005962 Sechium edule
Sed0006478 Sechium edule
Sed0006542 Sechium edule
Sed0022411 Sechium edule
SEGI_20268 Sequoiadendron giganteum
SEGI_21124 Sequoiadendron giganteum
SEGI_41106 Sequoiadendron giganteum
SGA_v2.0_scaffold1610G53998 Striga asiatica
SGA_v2.0_scaffold25G10875 Striga asiatica
SGA_v2.0_scaffold4G02079 Striga asiatica
SGA_v2.0_scaffold696G53473 Striga asiatica
SGA_v2.0_scaffold90G27984 Striga asiatica
SMO118G0164 Selaginella moellendorffii
SMO143G0020 Selaginella moellendorffii
SMO239G0193 Selaginella moellendorffii
Solyc06g084480.3 Solanum lycopersicum
Solyc09g074420.4 Solanum lycopersicum
Solyc12g026400.2 Solanum lycopersicum
Solyc12g062290.2 Solanum lycopersicum
Sopen06g035870 Solanum pennellii
Sopen09g029270 Solanum pennellii
Sopen12g012030 Solanum pennellii
Sopen12g025210 Solanum pennellii
Sp4g29860 Schrenkiella parvula
Sp7g01770 Schrenkiella parvula
TAR371G0382 Trochodendron aralioides
TAR371G0427 Trochodendron aralioides
TAR622G0661 Trochodendron aralioides
TAR633G2047 Trochodendron aralioides
THA.LOC104805408 Tarenaya hassleriana
THA.LOC104817531 Tarenaya hassleriana
THA.LOC104823918 Tarenaya hassleriana
Thecc.01G290500 Theobroma cacao
Thecc.03G007100 Theobroma cacao
Thecc.04G005200 Theobroma cacao
Thhalv10001363m.g Eutrema salsugineum
Thhalv10027697m.g Eutrema salsugineum
TPR.G16941 Trifolium pratense
TPR.G37544 Trifolium pratense
TWI15G1135 Tripterygium wilfordii
TWI23G0247 Tripterygium wilfordii
TWI56G1083 Tripterygium wilfordii
TWI81G0842 Tripterygium wilfordii
unitig_21.g20282 Utricularia gibba
unitig_26.g9627 Utricularia gibba
unitig_749.g13470 Utricularia gibba
vmacro02717 Vaccinium macrocarpon
vmacro05801 Vaccinium macrocarpon
vmacro14963 Vaccinium macrocarpon
vmacro19368 Vaccinium macrocarpon
VMungo0720G2626 Vigna mungo
VMungo1215G2242 Vigna mungo
VMungo1383G1675 Vigna mungo
Zm00001eb134680 Zea mays
Zm00001eb194670 Zea mays
Zm00001eb254270 Zea mays
Zm00001eb279850 Zea mays
Zm00001eb285440 Zea mays
Zm00001eb341750 Zea mays
Zm00001eb391220 Zea mays
Zm00001eb418000 Zea mays

User provided reference genes

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