Gene: AT2G47940

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G47940
  • Transcript Identifier AT2G47940.1
  • Gene Type Coding gene
  • Location Chr2 : 19618372-19622164 : negative

Gene Family Information

  • ID HOM05D000915
  • #Genes/#Species 656/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G47940.1
  • symbol DEG2
  • Alias DEGP2,DEGP protease 2,EMB3117,EMBRYO DEFECTIVE 3117
  • full_name degradation of periplasmic proteins 2
  • uniprot O82261

Descriptions

  • Description DEGP protease 2
  • Computational description DEGP protease 2 (DEGP2); FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: photosystem II repair, proteolysis; LOCATED IN: chloroplast stromal thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Serine endopeptidase DegP2 (InterPro:IPR015724), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DegP protease 9 (TAIR:AT5G40200.1); Has 15046 Blast hits to 15035 proteins in 2533 species: Archae - 101; Bacteria - 10614; Metazoa - 317; Fungi - 14; Plants - 376; Viruses - 0; Other Eukaryotes - 3624 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006508
IEA
GOA Databaseproteolysis
GO:0006508
IBA
Gene Ontologyproteolysis1
GO:0006508
IEA
InterProproteolysis
GO:0030163
IMP
Gene Ontologyprotein catabolic process2
GO:0009658
IMP
Gene Ontologychloroplast organization2
GO:0010206
IDA
Gene Ontologyphotosystem II repair3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004252
IDA
IBA
IEA
Gene Ontologyserine-type endopeptidase activity1 4
GO:0004252
IEA
InterProserine-type endopeptidase activity
GO:0005515
IEA
InterProprotein binding
GO:0008233
IEA
GOA Databasepeptidase activity
GO:0008236
IEA
GOA Databaseserine-type peptidase activity
GO:0016787
IEA
GOA Databasehydrolase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009535
IEA
GOA Databasechloroplast thylakoid membrane
GO:0009535
IDA
Gene Ontologychloroplast thylakoid membrane4
GO:0009579
IEA
GOA Databasethylakoid
GO:0016020
IEA
GOA Databasemembrane
GO:0009507
IDA
IEA
GOA Databasechloroplast
GO:0009507
HDA
Gene Ontologychloroplast5
GO:0009536
IEA
GOA Databaseplastid
GO:0009941
IDA
GOA Databasechloroplast envelope
GO:0009941
HDA
Gene Ontologychloroplast envelope6
GO:0009570
IDA
GOA Databasechloroplast stroma
GO:0009570
HDA
Gene Ontologychloroplast stroma7
GO:0005829
HDA
Gene Ontologycytosol8
GO:0009533
IDA
Gene Ontologychloroplast stromal thylakoid4
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR009003 Peptidase S1, PA clan
IPR041517 Protease Do-like, PDZ domain
IPR036034 PDZ superfamily
IPR001478 PDZ domain
IPR043504 Peptidase S1, PA clan, chymotrypsin-like fold
IPR001940 Peptidase S1C
Mapman id Description
19.4.2.3 Protein homeostasis.proteolysis.serine-type peptidase activities.S1-class protease (Deg)