Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p04490 Brassica napus
A04p04500 Brassica napus
A04p15940 Brassica napus
A07p22500 Brassica napus
A09p48380 Brassica napus
A09p58480 Brassica napus
Aa31LG10G10470 Aethionema arabicum
Aa31LG7G15520 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.659 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.3399 Anthoceros agrestis
Actinidia02945 Actinidia chinensis
Actinidia07736 Actinidia chinensis
Actinidia15075 Actinidia chinensis
Actinidia27839 Actinidia chinensis
Actinidia32085 Actinidia chinensis
Actinidia37201 Actinidia chinensis
Ah.01g009200 Amaranthus hybridus
Ah.01g009210 Amaranthus hybridus
Ah.10g037230 Amaranthus hybridus
Ah.15g097440 Amaranthus hybridus
Ah.16g102340 Amaranthus hybridus
AL4G10260 Arabidopsis lyrata
AL5G36590 Arabidopsis lyrata
Aqoxy4G02895 Aquilegia oxysepala
Aqoxy6G02204 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1JKV8J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J1L191 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V9BYJB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XZ8T7F Arachis hypogaea
AT2G21170 Arabidopsis thaliana
AT3G55440 Arabidopsis thaliana
ATR0559G197 Amborella trichopoda
ATR0810G028 Amborella trichopoda
Atru.chr12.444 Acer truncatum
Atru.chr3.3923 Acer truncatum
Atru.chr5.3225 Acer truncatum
Atru.chr5.3256 Acer truncatum
Atru.chr6.1248 Acer truncatum
Atru.chr9.590 Acer truncatum
AUR62001780 Chenopodium quinoa
AUR62009568 Chenopodium quinoa
AUR62010098 Chenopodium quinoa
AUR62012092 Chenopodium quinoa
AUR62013094 Chenopodium quinoa
AUR62039374 Chenopodium quinoa
BcaB01g00100 Brassica carinata
BcaB02g07688 Brassica carinata
BcaB02g08421 Brassica carinata
BcaB04g17255 Brassica carinata
BcaB06g29646 Brassica carinata
BcaB08g34967 Brassica carinata
BcaC02g09757 Brassica carinata
BcaC07g39862 Brassica carinata
BcaC07g41171 Brassica carinata
BolC4t25257H Brassica oleracea
BolC4t25259H Brassica oleracea
BolC4t26638H Brassica oleracea
BolC8t50682H Brassica oleracea
BolC8t50684H Brassica oleracea
BolC8t51741H Brassica oleracea
BraA04t16160Z Brassica rapa
BraA04t17227Z Brassica rapa
BraA07t29926Z Brassica rapa
BraA09t40290Z Brassica rapa
BraA09t41235Z Brassica rapa
C04p36910 Brassica napus
C04p36930 Brassica napus
C04p50400 Brassica napus
C08p30650 Brassica napus
C08p30680 Brassica napus
C08p41780 Brassica napus
CAN.G111.49 Capsicum annuum
CAN.G1608.4 Capsicum annuum
CAN.G4025.1 Capsicum annuum
CAN.G588.24 Capsicum annuum
CAN.G786.10 Capsicum annuum
CANSAT25G0104 Cannabis sativa
CANSAT56G0785 Cannabis sativa
CARHR112020 Cardamine hirsuta
CARHR165460 Cardamine hirsuta
Carub.0004s0019 Capsella rubella
Carub.0005s2216 Capsella rubella
Ca_01325_v3 Cicer arietinum L.
Ca_01344_v3 Cicer arietinum L.
Ca_26407_v3 Cicer arietinum L.
Ca_30908_v3 Cicer arietinum L.
Ca_31354_v3 Cicer arietinum L.
CBR_g16853 Chara braunii
CBR_g19841 Chara braunii
CBR_g23091 Chara braunii
CBR_g26272 Chara braunii
CBR_g271 Chara braunii
CBR_g31656 Chara braunii
CBR_g35000 Chara braunii
CBR_g56630 Chara braunii
CBR_g8194 Chara braunii
Cc01_g12910 Coffea canephora
Cc02_g07810 Coffea canephora
Cc02_g16530 Coffea canephora
Cc02_g16540 Coffea canephora
CDE05G1618 Ceratophyllum demersum
CDE05G3181 Ceratophyllum demersum
CDE08G0056 Ceratophyllum demersum
Cfa011509 Carpinus fangiana
Cfa014374 Carpinus fangiana
Cfa025926 Carpinus fangiana
Ciclev10003291m.g Citrus clementina
Ciclev10024370m.g Citrus clementina
Ciclev10024450m.g Citrus clementina
Ciclev10028924m.g Citrus clementina
Ciclev10029115m.g Citrus clementina
Ciclev10032537m.g Citrus clementina
CiPaw.01G287800 Carya illinoinensis
CiPaw.02G184200 Carya illinoinensis
CiPaw.02G184300 Carya illinoinensis
CiPaw.05G077100 Carya illinoinensis
CiPaw.13G093800 Carya illinoinensis
ClCG02G011400 Citrullus lanatus
ClCG02G020140 Citrullus lanatus
ClCG04G004870 Citrullus lanatus
COL.COLO4_15051 Corchorus olitorius
COL.COLO4_17254 Corchorus olitorius
COL.COLO4_17255 Corchorus olitorius
COL.COLO4_18514 Corchorus olitorius
COL.COLO4_35834 Corchorus olitorius
Cpa.g.sc1.410 Carica papaya
Cpa.g.sc37.194 Carica papaya
Cpa.g.sc81.140 Carica papaya
Cre01.g029300 Chlamydomonas reinhardtii
CsaV3_2G015690 Cucumis sativus L.
CsaV3_4G031770 Cucumis sativus L.
CsaV3_6G016850 Cucumis sativus L.
CSS0000332 Camellia sinensis var. sinensis
CSS0001105 Camellia sinensis var. sinensis
CSS0020373 Camellia sinensis var. sinensis
CSS0046841 Camellia sinensis var. sinensis
CSS0047152 Camellia sinensis var. sinensis
CSS0047862 Camellia sinensis var. sinensis
DCAR_003699 Daucus carota
DCAR_011707 Daucus carota
Dinv01034 Davidia involucrata
Dinv03042 Davidia involucrata
Dinv04969 Davidia involucrata
Dinv07687 Davidia involucrata
Dinv17008 Davidia involucrata
Dinv25964 Davidia involucrata
Dinv26019 Davidia involucrata
Dinv41976 Davidia involucrata
Dinv42957 Davidia involucrata
Dinv43142 Davidia involucrata
Duzib052G0414 Durio zibethinus
Duzib106G1960 Durio zibethinus
Duzib132G0941 Durio zibethinus
Duzib150G0224 Durio zibethinus
Duzib170G0187 Durio zibethinus
ECA233G0317 Erigeron canadensis
ECA233G4928 Erigeron canadensis
ECA238G1873 Erigeron canadensis
EL10Ac2g04743 Beta vulgaris
EL10Ac7g16023 Beta vulgaris
EL10Ac9g21443 Beta vulgaris
Eucgr.I01374 Eucalyptus grandis
Eucgr.J00008 Eucalyptus grandis
Eucgr.J02049 Eucalyptus grandis
FAN01G0505 Fragaria x ananassa
FAN01G0733 Fragaria x ananassa
FAN03G2234 Fragaria x ananassa
FAN03G2553 Fragaria x ananassa
FAN03G3409 Fragaria x ananassa
FAN06G3479 Fragaria x ananassa
FAN06G3541 Fragaria x ananassa
FAN10G3878 Fragaria x ananassa
FAN11G0202 Fragaria x ananassa
FAN15G2532 Fragaria x ananassa
FAN16G0707 Fragaria x ananassa
FAN18G3982 Fragaria x ananassa
FAN20G2773 Fragaria x ananassa
FAN21G0594 Fragaria x ananassa
FAN24G1473 Fragaria x ananassa
FAN25G1479 Fragaria x ananassa
FAN27G1589 Fragaria x ananassa
FvH4_2g02030 Fragaria vesca
FvH4_3g36190 Fragaria vesca
FvH4_5g33390 Fragaria vesca
FvH4_7g22530 Fragaria vesca
Glyma.03G185800 Glycine max
Glyma.10G059500 Glycine max
Glyma.13G146200 Glycine max
Glyma.13G336200 Glycine max
Glyma.15G038100 Glycine max
Glyma.19G186000 Glycine max
Gohir.A01G163600 Gossypium hirsutum
Gohir.A03G042300 Gossypium hirsutum
Gohir.A04G123100 Gossypium hirsutum
Gohir.A05G095500 Gossypium hirsutum
Gohir.A08G000400 Gossypium hirsutum
Gohir.A10G219700 Gossypium hirsutum
Gohir.D01G155700 Gossypium hirsutum
Gohir.D03G125300 Gossypium hirsutum
Gohir.D04G165150 Gossypium hirsutum
Gohir.D05G095800 Gossypium hirsutum
Gohir.D08G011400 Gossypium hirsutum
Gohir.D10G229200 Gossypium hirsutum
Gorai.002G192900 Gossypium raimondii
Gorai.003G131500 Gossypium raimondii
Gorai.004G005000 Gossypium raimondii
Gorai.009G099100 Gossypium raimondii
Gorai.011G261700 Gossypium raimondii
Gorai.012G153600 Gossypium raimondii
GSVIVG01016559001 Vitis vinifera
GSVIVG01024086001 Vitis vinifera
GSVIVG01024952001 Vitis vinifera
HanXRQChr06g0184891 Helianthus annuus
HanXRQChr08g0215681 Helianthus annuus
HanXRQChr13g0389071 Helianthus annuus
HanXRQChr14g0428971 Helianthus annuus
HanXRQChr17g0556391 Helianthus annuus
Haze_02199 Corylus avellana
Haze_17071 Corylus avellana
Haze_24102 Corylus avellana
Haze_26089 Corylus avellana
Haze_26833 Corylus avellana
Hma1.2p1_0418F.1_g149230 Hydrangea macrophylla
HPP92_014303 Vanilla planifolia
HPP92_019831 Vanilla planifolia
HPP92_027728 Vanilla planifolia
Hund06403 Selenicereus undatus
Hund13766 Selenicereus undatus
Hund16084 Selenicereus undatus
Hund18905 Selenicereus undatus
Lalb_Chr20g0112521 Lupinus albus
Lalb_Chr22g0349931 Lupinus albus
Lalb_Chr24g0394141 Lupinus albus
Lj1A1169G70 Lonicera japonica
Lj1A938T35 Lonicera japonica
Lj1g0005278 Lotus japonicus
Lj1g0008216 Lotus japonicus
Lj2A1062T50 Lonicera japonica
Lj3g0002836 Lotus japonicus
Lj3g0019416 Lotus japonicus
Lj5A185T54 Lonicera japonica
Lj8A84T92 Lonicera japonica
Lsat_1_v5_gn_2_5900 Lactuca sativa
Lsat_1_v5_gn_3_60641 Lactuca sativa
Lsat_1_v5_gn_3_68441 Lactuca sativa
Lsat_1_v5_gn_4_185241 Lactuca sativa
Lsat_1_v5_gn_4_36980 Lactuca sativa
Lsat_1_v5_gn_5_106881 Lactuca sativa
Lsat_1_v5_gn_7_39120 Lactuca sativa
Lsat_1_v5_gn_7_58441 Lactuca sativa
Lsat_1_v5_gn_8_125881 Lactuca sativa
Lsat_1_v5_gn_8_156881 Lactuca sativa
Manes.01G173500 Manihot esculenta
Manes.02G132800 Manihot esculenta
Manes.04G078300 Manihot esculenta
Manes.07G116700 Manihot esculenta
Manes.11G089900 Manihot esculenta
Mapoly0007s0011 Marchantia polymorpha
Mapoly0007s0110 Marchantia polymorpha
Mapoly0042s0045 Marchantia polymorpha
MBI05_g22028_MAGBIO Magnolia biondii
MBI05_g33716_MAGBIO Magnolia biondii
MBI14_g35404_MAGBIO Magnolia biondii
MCO04G016 Micromonas commoda
MCO10G061 Micromonas commoda
MD00G1012200 Malus domestica
MD00G1070600 Malus domestica
MD01G1083200 Malus domestica
MD01G1134600 Malus domestica
MD05G1115700 Malus domestica
MD07G1199300 Malus domestica
MD10G1118200 Malus domestica
MD15G1144100 Malus domestica
Medtr2g096940 Medicago truncatula
Medtr7g103020 Medicago truncatula
MELO3C008879.2 Cucumis melo
MELO3C020780.2 Cucumis melo
MELO3C025916.2 Cucumis melo
Migut.B00166 Erythranthe guttata
Migut.F00786 Erythranthe guttata
Migut.N00912 Erythranthe guttata
MSTRG.16860 Avicennia marina
MSTRG.5428 Avicennia marina
MSTRG.8991 Avicennia marina
Nitab4.5_0000272g0170 Nicotiana tabacum
Nitab4.5_0000283g0100 Nicotiana tabacum
Nitab4.5_0000956g0160 Nicotiana tabacum
Nitab4.5_0000980g0170 Nicotiana tabacum
Nitab4.5_0002836g0060 Nicotiana tabacum
Nitab4.5_0004607g0010 Nicotiana tabacum
Nitab4.5_0010816g0020 Nicotiana tabacum
Nitab4.5_0011493g0010 Nicotiana tabacum
Nn1g05899 Nelumbo nucifera
Nn2g11115 Nelumbo nucifera
Nn2g13350 Nelumbo nucifera
Nn5g30138 Nelumbo nucifera
Oeu020689.3 Olea europaea
Oeu046126.3 Olea europaea
Oeu048241.1 Olea europaea
Oeu053907.1 Olea europaea
Oeu064375.3 Olea europaea
Os01g0147900 Oryza sativa ssp. japonica
Os01g0841600 Oryza sativa ssp. japonica
Peaxi162Scf00362g01044 Petunia axillaris
Peaxi162Scf00538g00523 Petunia axillaris
Peaxi162Scf00760g00322 Petunia axillaris
PGR044G2355 Punica granatum
PGR142G4237 Punica granatum
PGSC0003DMG400001595 Solanum tuberosum
PGSC0003DMG400004436 Solanum tuberosum
PGSC0003DMG400027745 Solanum tuberosum
Phvul.001G181000 Phaseolus vulgaris
Phvul.L005643 Phaseolus vulgaris
Potri.001G240300 Populus trichocarpa
Potri.004G168000 Populus trichocarpa
Potri.008G056300 Populus trichocarpa
Potri.009G031200 Populus trichocarpa
Potri.009G129500 Populus trichocarpa
Potri.010G203500 Populus trichocarpa
Pp3c11_9120 Physcomitrium patens
Pp3c16_11330 Physcomitrium patens
Pp3c18_14780 Physcomitrium patens
Pp3c1_9830 Physcomitrium patens
Pp3c24_20190 Physcomitrium patens
Pp3c27_3160 Physcomitrium patens
Pp3c2_38020 Physcomitrium patens
Pp3c6_10280 Physcomitrium patens
PRCOL_00002950 Prasinoderma coloniale
PRCOL_00004705 Prasinoderma coloniale
Prupe.2G236000 Prunus persica
Prupe.6G076300 Prunus persica
Prupe.6G076500 Prunus persica
Prupe.8G160500 Prunus persica
Psat1g217000 Pisum sativum
Psat3g040800 Pisum sativum
Psat3g090440 Pisum sativum
Psat3g090480 Pisum sativum
Psat5g284680 Pisum sativum
PSO063G7134 Papaver somniferum
PSO217G0001 Papaver somniferum
PSO339G2941 Papaver somniferum
PSO339G6267 Papaver somniferum
PSO384G1498 Papaver somniferum
PSO541G3545 Papaver somniferum
PSO675G6266 Papaver somniferum
PSO729G0220 Papaver somniferum
PSO832G3055 Papaver somniferum
QL01p031790 Quercus lobata
QL08p059676 Quercus lobata
QL11p047522 Quercus lobata
RcHm_v2.0_Chr1g0367211 Rosa chinensis
RcHm_v2.0_Chr5g0064961 Rosa chinensis
RcHm_v2.0_Chr6g0245261 Rosa chinensis
Rhsim03G0130400 Rhododendron simsii
Rhsim05G0063200 Rhododendron simsii
Rhsim11G0187700 Rhododendron simsii
Rhsim13G0082500 Rhododendron simsii
Sabra04G0112600 Salix brachista
Sabra08G0040900 Salix brachista
Sabra09G0022000 Salix brachista
Sabra09G0099000 Salix brachista
Sabra10G0157000 Salix brachista
Sabra16G0145000 Salix brachista
SalBow3G3299 Salvia bowleyana
Sc10g0001610 Simmondsia chinensis
Sc18g0006660 Simmondsia chinensis
Sc21g0005820 Simmondsia chinensis
Sed0000953 Sechium edule
Sed0004071 Sechium edule
Sed0004870 Sechium edule
Sed0009062 Sechium edule
Sed0009756 Sechium edule
SEGI_18068 Sequoiadendron giganteum
SEGI_22023 Sequoiadendron giganteum
SGA_v2.0_scaffold106G30649 Striga asiatica
SGA_v2.0_scaffold32G13234 Striga asiatica
SGA_v2.0_scaffold58G20453 Striga asiatica
SGA_v2.0_scaffold96G28941 Striga asiatica
SHI05683 Sapria himalayana
SHI45664 Sapria himalayana
SHI52973 Sapria himalayana
SMO304G0115 Selaginella moellendorffii
SMO367G0204 Selaginella moellendorffii
Solyc01g111120.4 Solanum lycopersicum
Solyc04g011510.4 Solanum lycopersicum
Solyc06g005490.3 Solanum lycopersicum
Solyc10g054870.3 Solanum lycopersicum
Sopen01g053180 Solanum pennellii
Sopen04g005690 Solanum pennellii
Sopen06g001470 Solanum pennellii
Sopen10g024790 Solanum pennellii
Sp1g36140 Schrenkiella parvula
Sp4g00320 Schrenkiella parvula
Sp5g07030 Schrenkiella parvula
TAR376G1161 Trochodendron aralioides
TAR411G0001 Trochodendron aralioides
TAR623G0339 Trochodendron aralioides
TAR623G1424 Trochodendron aralioides
TAR628G0668 Trochodendron aralioides
TAR633G0078 Trochodendron aralioides
TAR633G1739 Trochodendron aralioides
TAR636G0932 Trochodendron aralioides
THA.LOC104804100 Tarenaya hassleriana
THA.LOC104807802 Tarenaya hassleriana
THA.LOC104810776 Tarenaya hassleriana
THA.LOC104824276 Tarenaya hassleriana
THA.LOC104824776 Tarenaya hassleriana
Thecc.02G067100 Theobroma cacao
Thecc.09G320900 Theobroma cacao
Thecc.10G041200 Theobroma cacao
Thhalv10000249m.g Eutrema salsugineum
Thhalv10010654m.g Eutrema salsugineum
TPR.G32799 Trifolium pratense
TPR.G34260 Trifolium pratense
TWI31G0024 Tripterygium wilfordii
TWI75G0642 Tripterygium wilfordii
TWI75G0899 Tripterygium wilfordii
TWI79G0193 Tripterygium wilfordii
TWI79G0766 Tripterygium wilfordii
unitig_21.g20804 Utricularia gibba
unitig_37.g12457 Utricularia gibba
unitig_744.g24267 Utricularia gibba
vmacro02248 Vaccinium macrocarpon
vmacro03070 Vaccinium macrocarpon
vmacro07173 Vaccinium macrocarpon
VMungo1080G1683 Vigna mungo
VMungo1383G1778 Vigna mungo
Zm00001eb103580 Zea mays
Zm00001eb124410 Zea mays
Zm00001eb301990 Zea mays
Zm00001eb319770 Zea mays
Zm00001eb335870 Zea mays
Zm00001eb346020 Zea mays
Zm00001eb367890 Zea mays

User provided reference genes

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