Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A09p26680 Brassica napus
Aa31LG9G10020 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.493 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.1065 Anthoceros agrestis
Actinidia06336 Actinidia chinensis
Actinidia23963 Actinidia chinensis
Actinidia23967 Actinidia chinensis
Actinidia26436 Actinidia chinensis
Ah.01g003390 Amaranthus hybridus
AL6G47620 Arabidopsis lyrata
AL7G41290 Arabidopsis lyrata
Aqoxy5G02399 Aquilegia oxysepala
Aqoxy5G02404 Aquilegia oxysepala
Aqoxy5G02409 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1VP9U3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M4FG4U Arachis hypogaea
AT4G12620 Arabidopsis thaliana
AT4G14700 Arabidopsis thaliana
ATR0009G001 Amborella trichopoda
ATR0605G286 Amborella trichopoda
Atru.chr3.2739 Acer truncatum
AUR62000111 Chenopodium quinoa
AUR62019289 Chenopodium quinoa
BcaB01g01767 Brassica carinata
BcaC04g21255 Brassica carinata
BcaC09g51823 Brassica carinata
BolC2t12092H Brassica oleracea
BolC9t56215H Brassica oleracea
BolC9t59746H Brassica oleracea
BraA09t38238Z Brassica rapa
C01p08700 Brassica napus
C02p60370 Brassica napus
C09p33790 Brassica napus
CAN.G289.50 Capsicum annuum
CANSAT54G1530 Cannabis sativa
CARHR253540 Cardamine hirsuta
Carub.0006s3195 Capsella rubella
Ca_17467_v3 Cicer arietinum L.
CBR_g41485 Chara braunii
Cc02_g33870 Coffea canephora
CDE05G2287 Ceratophyllum demersum
Cfa009762 Carpinus fangiana
Cfa026404 Carpinus fangiana
Ciclev10005880m.g Citrus clementina
Ciclev10014192m.g Citrus clementina
CiPaw.13G161800 Carya illinoinensis
ClCG08G000100 Citrullus lanatus
ClCG08G000110 Citrullus lanatus
ClCG08G000120 Citrullus lanatus
COL.COLO4_24889 Corchorus olitorius
COL.COLO4_24890 Corchorus olitorius
Cpa.g.sc84.65 Carica papaya
Cre10.g455600 Chlamydomonas reinhardtii
CsaV3_3G030760 Cucumis sativus L.
CsaV3_6G052450 Cucumis sativus L.
CSS0002798 Camellia sinensis var. sinensis
CSS0013975 Camellia sinensis var. sinensis
DCAR_031545 Daucus carota
Dinv22185 Davidia involucrata
Duzib170G0888 Durio zibethinus
ECA238G3100 Erigeron canadensis
EL10Ac4g10265 Beta vulgaris
EL10Ac4g10281 Beta vulgaris
Eucgr.J00777 Eucalyptus grandis
FAN01G0266 Fragaria x ananassa
FAN03G1122 Fragaria x ananassa
FAN06G1152 Fragaria x ananassa
FAN10G0764 Fragaria x ananassa
FAN19G2197 Fragaria x ananassa
FAN23G0013 Fragaria x ananassa
FAN28G2360 Fragaria x ananassa
FvH4_1g30421 Fragaria vesca
FvH4_1g30422 Fragaria vesca
FvH4_1g30423 Fragaria vesca
FvH4_1g30430 Fragaria vesca
FvH4_7g17041 Fragaria vesca
Glyma.13G340100 Glycine max
Glyma.15G034300 Glycine max
Gohir.A08G013660 Gossypium hirsutum
Gohir.D08G024200 Gossypium hirsutum
Gorai.004G019600 Gossypium raimondii
GSVIVG01001925001 Vitis vinifera
GSVIVG01001926001 Vitis vinifera
GSVIVG01025279001 Vitis vinifera
GSVIVG01025457001 Vitis vinifera
HanXRQChr07g0197501 Helianthus annuus
Haze_23126 Corylus avellana
Hma1.2p1_0571F.1_g180890 Hydrangea macrophylla
Hma1.2p1_0571F.1_g180900 Hydrangea macrophylla
HPP92_009576 Vanilla planifolia
Hund07518 Selenicereus undatus
Lalb_Chr24g0397081 Lupinus albus
Lj2C632T3 Lonicera japonica
Lj3g0019316 Lotus japonicus
Lj6C14T1 Lonicera japonica
Lj6C4T5 Lonicera japonica
Lsat_1_v5_gn_2_97601 Lactuca sativa
Manes.14G002000 Manihot esculenta
Mapoly0041s0101 Marchantia polymorpha
MBI01_g18890_MAGBIO Magnolia biondii
MCO08G197 Micromonas commoda
MD03G1176600 Malus domestica
MD11G1197200 Malus domestica
MD11G1197400 Malus domestica
Medtr3g060290 Medicago truncatula
Medtr8g099640 Medicago truncatula
MELO3C007066.2 Cucumis melo
Migut.D00596 Erythranthe guttata
MSTRG.21381 Avicennia marina
Nitab4.5_0000023g0270 Nicotiana tabacum
Nitab4.5_0005731g0030 Nicotiana tabacum
Nn2g15472 Nelumbo nucifera
Nn2g15473 Nelumbo nucifera
Nn2g15474 Nelumbo nucifera
Nn8g41218 Nelumbo nucifera
Oeu043298.1 Olea europaea
Peaxi162Scf00862g00001 Petunia axillaris
PGR119G1865 Punica granatum
PGSC0003DMG401012812 Solanum tuberosum
PGSC0003DMG402012812 Solanum tuberosum
Phvul.L009243 Phaseolus vulgaris
Potri.009G054300 Populus trichocarpa
Pp3c9_1080 Physcomitrium patens
PRCOL_00004147 Prasinoderma coloniale
Prupe.4G246200 Prunus persica
Prupe.5G048200 Prunus persica
Psat0s3676g0040 Pisum sativum
Psat7g024280 Pisum sativum
PSO170G1822 Papaver somniferum
PSO302G0234 Papaver somniferum
PSO455G0096 Papaver somniferum
QL01p004967 Quercus lobata
RcHm_v2.0_Chr3g0490671 Rosa chinensis
RcHm_v2.0_Chr7g0225881 Rosa chinensis
Rhsim01G0191400 Rhododendron simsii
Sabra09G0039600 Salix brachista
SalBow6G4490 Salvia bowleyana
SalBow8G0323 Salvia bowleyana
Sc16g0011520 Simmondsia chinensis
Sed0019583 Sechium edule
SGA_v2.0_scaffold247G44874 Striga asiatica
SHI27481 Sapria himalayana
SHI27485 Sapria himalayana
SHI27486 Sapria himalayana
SMO145G0037 Selaginella moellendorffii
Solyc03g006420.4 Solanum lycopersicum
Sopen03g002430 Solanum pennellii
Sp6g04850 Schrenkiella parvula
TAR636G0773 Trochodendron aralioides
TAR636G2291 Trochodendron aralioides
THA.LOC104799099 Tarenaya hassleriana
Thecc.09G232100 Theobroma cacao
Thhalv10029404m.g Eutrema salsugineum
TPR.G3376 Trifolium pratense
TWI32G0348 Tripterygium wilfordii
unitig_0.g298 Utricularia gibba
vmacro12587 Vaccinium macrocarpon
vmacro17434 Vaccinium macrocarpon
VMungo1080G0814 Vigna mungo
Zm00001eb278360 Zea mays
Zm00001eb374440 Zea mays

User provided reference genes

Program Settings