Gene: COL.COLO4_24890
General Information
Structural Information
- Species Corchorus olitorius
- Gene Identifier COL.COLO4_24890
- Transcript Identifier COL.rna23624
- Gene Type Coding gene
- Location AWUE01018839.1 : 47666-49580 : negative
Gene Family Information
- ID HOM05D004447
- #Genes/#Species 161/98
- Phylogenetic origin
- ID ORTHO05D005973
- #Genes/#Species 149/98
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid rna23624
- GenBank OMO78005.1
- id gene24862
- gene_name COLO4_24890
- uniprot A0A1R3I5X3
Descriptions
- Description hypothetical protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006260 | IEA | GOA Database | DNA replication | |
| GO:0009567 | ISO | PLAZA Integrative Orthology | double fertilization forming a zygote and endosperm | AT4G12620 |
| GO:0006355 | ISO | PLAZA Integrative Orthology | regulation of transcription, DNA-templated | AT4G14700 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0003682 | IEA | GOA Database | chromatin binding | |
| GO:0003682 | IEA | InterPro | chromatin binding | |
| GO:0016887 | ISO | PLAZA Homology (enrichment) | ATP hydrolysis activity | HOM05D004447 |
| GO:0010385 | ISO | PLAZA Integrative Orthology | double-stranded methylated DNA binding | AT4G14700 |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT4G14700 |
| GO:0042393 | ISO | PLAZA Integrative Orthology | histone binding | AT4G12620 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001025 | Bromo adjacent homology (BAH) domain |
| IPR019787 | Zinc finger, PHD-finger |
| IPR001965 | Zinc finger, PHD-type |
| IPR011011 | Zinc finger, FYVE/PHD-type |
| IPR020793 | Origin recognition complex, subunit 1 |
| IPR043151 | Bromo adjacent homology (BAH) domain superfamily |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| Mapman id | Description |
|---|---|
| 13.2.1.1.1 | Cell cycle organisation.DNA replication.preinitiation.origin recognition complex.component ORC1 |