Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p20080 Brassica napus
Aa31LG5G9810 Aethionema arabicum
Actinidia14688 Actinidia chinensis
Actinidia18212 Actinidia chinensis
Ah.10g034740 Amaranthus hybridus
AL4G17700 Arabidopsis lyrata
Aqoxy5G01364 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea
AT2G25870 Arabidopsis thaliana
AT5G38747 Arabidopsis thaliana
ATR0705G146 Amborella trichopoda
ATR1159G027 Amborella trichopoda
Atru.chr7.2050 Acer truncatum
AUR62009222 Chenopodium quinoa
AUR62040221 Chenopodium quinoa
BcaB06g29637 Brassica carinata
BcaB06g29638 Brassica carinata
BolC4t27102H Brassica oleracea
BraA04t17590Z Brassica rapa
C04p55760 Brassica napus
CAN.G1444.6 Capsicum annuum
CANSAT21G1878 Cannabis sativa
CANSAT21G2561 Cannabis sativa
CARHR115360 Cardamine hirsuta
Carub.0004s0569 Capsella rubella
Ca_03360_v3 Cicer arietinum L.
Ca_12764_v3 Cicer arietinum L.
Ca_19223_v3 Cicer arietinum L.
Ca_28629_v3 Cicer arietinum L.
CBR_g31496 Chara braunii
Cc08_g09950 Coffea canephora
Cc08_g09960 Coffea canephora
CDE02G0724 Ceratophyllum demersum
CDE02G1264 Ceratophyllum demersum
CDE02G2445 Ceratophyllum demersum
CDE09G0966 Ceratophyllum demersum
Cfa013388 Carpinus fangiana
Ciclev10007803m.g Citrus clementina
Ciclev10010169m.g Citrus clementina
CiPaw.08G027400 Carya illinoinensis
ClCG11G015050 Citrullus lanatus
COL.COLO4_21003 Corchorus olitorius
Cpa.g.sc7.220 Carica papaya
Cpa.g.sc7.222 Carica papaya
Cre06.g252150 Chlamydomonas reinhardtii
Cre09.g402997 Chlamydomonas reinhardtii
CsaV3_3G048450 Cucumis sativus L.
CSS0005257 Camellia sinensis var. sinensis
CSS0005508 Camellia sinensis var. sinensis
DCAR_003083 Daucus carota
Dinv23396 Davidia involucrata
Dinv27935 Davidia involucrata
Duzib150G0295 Durio zibethinus
Duzib168G1809 Durio zibethinus
ECA233G5497 Erigeron canadensis
EL10Ac2g03971 Beta vulgaris
Eucgr.C00613 Eucalyptus grandis
FAN15G1676 Fragaria x ananassa
FAN15G3540 Fragaria x ananassa
FAN20G0434 Fragaria x ananassa
FAN20G2992 Fragaria x ananassa
FAN27G0398 Fragaria x ananassa
FAN27G1484 Fragaria x ananassa
FvH4_2g35220 Fragaria vesca
FvH4_2g35230 Fragaria vesca
Glyma.14G144100 Glycine max
Glyma.17G192300 Glycine max
Gohir.A06G091200 Gossypium hirsutum
Gohir.A08G152250 Gossypium hirsutum
Gohir.D06G090400 Gossypium hirsutum
Gorai.010G104100 Gossypium raimondii
GSVIVG01035316001 Vitis vinifera
HanXRQChr02g0047921 Helianthus annuus
Haze_21925 Corylus avellana
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla
HPP92_003623 Vanilla planifolia
HPP92_005557 Vanilla planifolia
HPP92_005558 Vanilla planifolia
Hund03376 Selenicereus undatus
Hund19490 Selenicereus undatus
Hund19491 Selenicereus undatus
Lalb_Chr22g0360911 Lupinus albus
Lj1g0025930 Lotus japonicus
Lj7C697T10 Lonicera japonica
Lj8A567T30 Lonicera japonica
Lj8A567T31 Lonicera japonica
Lsat_1_v5_gn_6_7781 Lactuca sativa
Manes.03G060700 Manihot esculenta
Manes.16G073200 Manihot esculenta
Mapoly0124s0034 Marchantia polymorpha
MBI04_g07004_MAGBIO Magnolia biondii
MCO02G391 Micromonas commoda
MCO10G003 Micromonas commoda
MD08G1110200 Malus domestica
MD08G1110300 Malus domestica
MD15G1112400 Malus domestica
Medtr1g007290 Medicago truncatula
Medtr1g007320 Medicago truncatula
MELO3C003474.2 Cucumis melo
Migut.A00179 Erythranthe guttata
MSTRG.25921 Avicennia marina
Nitab4.5_0000318g0140 Nicotiana tabacum
Nitab4.5_0008242g0010 Nicotiana tabacum
Nn8g39044 Nelumbo nucifera
Oeu008300.1 Olea europaea
Oeu019243.1 Olea europaea
Oeu059683.2 Olea europaea
Os01g0739400 Oryza sativa ssp. japonica
Os02g0227000 Oryza sativa ssp. japonica
Os09g0388400 Oryza sativa ssp. japonica
Os09g0393501 Oryza sativa ssp. japonica
Os09g0393801 Oryza sativa ssp. japonica
Peaxi162Scf00699g00520 Petunia axillaris
PGR031G3150 Punica granatum
PGSC0003DMG400034377 Solanum tuberosum
PGSC0003DMG400037139 Solanum tuberosum
Phvul.001G078300 Phaseolus vulgaris
Potri.006G235301 Populus trichocarpa
Potri.018G057500 Populus trichocarpa
Pp3c15_25010 Physcomitrium patens
PRCOL_00001006 Prasinoderma coloniale
PRCOL_00006247 Prasinoderma coloniale
Prupe.1G444400 Prunus persica
Prupe.1G444500 Prunus persica
Psat6g036080 Pisum sativum
PSO210G0672 Papaver somniferum
PSO210G3373 Papaver somniferum
QL12p040912 Quercus lobata
RcHm_v2.0_Chr6g0271151 Rosa chinensis
RcHm_v2.0_Chr6g0306701 Rosa chinensis
RcHm_v2.0_Chr6g0306711 Rosa chinensis
RcHm_v2.0_Chr6g0310261 Rosa chinensis
Rhsim11G0049500 Rhododendron simsii
Sabra18G0052000 Salix brachista
SalBow4G2164 Salvia bowleyana
Sc23g0005440 Simmondsia chinensis
Sed0005675 Sechium edule
SEGI_12418 Sequoiadendron giganteum
SEGI_35823 Sequoiadendron giganteum
SGA_v2.0_scaffold103G30047 Striga asiatica
SGA_v2.0_scaffold266G46140 Striga asiatica
SMO352G0038 Selaginella moellendorffii
Solyc06g011570.3 Solanum lycopersicum
Solyc08g066180.3 Solanum lycopersicum
Sopen06g006790 Solanum pennellii
Sopen08g019860 Solanum pennellii
Sp4g05710 Schrenkiella parvula
TAR383G0959 Trochodendron aralioides
TAR625G0121 Trochodendron aralioides
TAR639G0002 Trochodendron aralioides
THA.LOC104818595 Tarenaya hassleriana
Thecc.09G048300 Theobroma cacao
Thhalv10001936m.g Eutrema salsugineum
TPR.G24519 Trifolium pratense
TWI34G1917 Tripterygium wilfordii
unitig_32.g11476 Utricularia gibba
vmacro00182 Vaccinium macrocarpon
VMungo1215G2735 Vigna mungo
VMungo1383G1648 Vigna mungo
Zm00001eb153790 Zea mays
Zm00001eb239610 Zea mays

User provided reference genes

Program Settings