Gene: AT2G25870

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G25870
  • Transcript Identifier AT2G25870.1
  • Gene Type Coding gene
  • Location Chr2 : 11031159-11034302 : positive

Gene Family Information

  • ID HOM05D004433
  • #Genes/#Species 162/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G25870.1
  • uniprot Q8L5Z4

Descriptions

  • Description haloacid dehalogenase-like hydrolase family protein
  • Computational description haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: metallopeptidase activity, hydrolase activity, catalytic activity, zinc ion binding; INVOLVED IN: metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0054, conserved site (InterPro:IPR020549), Cof protein (InterPro:IPR000150), HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), HAD superfamily hydrolase-like, type 3 (InterPro:IPR013200), Uncharacterised protein family UPF0054 (InterPro:IPR002036); Has 22843 Blast hits to 22827 proteins in 2747 species: Archae - 229; Bacteria - 20428; Metazoa - 41; Fungi - 14; Plants - 67; Viruses - 0; Other Eukaryotes - 2064 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006364
IEA
GOA DatabaserRNA processing
GO:0006364
IEA
InterProrRNA processing
GO:0042254
IEA
GOA Databaseribosome biogenesis
GO:0006508
IEA
GOA Databaseproteolysis
GO:0090502
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:1901259
IMP
Gene Ontologychloroplast rRNA processing1
GO:0009658
IMP
Gene Ontologychloroplast organization1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0016787
IEA
InterProhydrolase activity
GO:0004222
IEA
Gene Ontologymetalloendopeptidase activity
GO:0004222
IEA
InterPrometalloendopeptidase activity
GO:0004518
IEA
GOA Databasenuclease activity
GO:0004519
IEA
GOA Databaseendonuclease activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0004521
IDA
Gene Ontologyendoribonuclease activity1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009536
IEA
GOA Databaseplastid
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
IDA, IMP
Gene Ontologychloroplast1 2
GO:0009570
IEA
GOA Databasechloroplast stroma

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR023214 HAD superfamily
IPR006379 HAD-superfamily hydrolase, subfamily IIB
IPR002036 Endoribonuclease YbeY
IPR036412 HAD-like superfamily
IPR000150 Cof family
IPR023091 Metalloprotease catalytic domain superfamily, predicted
Mapman id Description
16.11.1.9 RNA processing.organelle machinery.ribonuclease activities.endoribonuclease (YbeY)