Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p04570 Brassica napus
A10p27090 Brassica napus
Aa31LG3G16680 Aethionema arabicum
Aa31LG5G22920 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.1037 Anthoceros agrestis
Actinidia28826 Actinidia chinensis
Actinidia30847 Actinidia chinensis
Ah.02g123600 Amaranthus hybridus
AL6G21000 Arabidopsis lyrata
Aqoxy5G01391 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4PU0PP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H8MGJA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y3UPDN Arachis hypogaea
AT5G10480 Arabidopsis thaliana
ATR0767G219 Amborella trichopoda
Atru.chr3.1251 Acer truncatum
AUR62003659 Chenopodium quinoa
AUR62017968 Chenopodium quinoa
AUR62043746 Chenopodium quinoa
BcaB01g05531 Brassica carinata
BcaB01g06282 Brassica carinata
BcaB08g37102 Brassica carinata
BolC3t13038H Brassica oleracea
BolC9t59459H Brassica oleracea
BraA03t09799Z Brassica rapa
BraA10t44761Z Brassica rapa
C03p05130 Brassica napus
C09p66790 Brassica napus
CAN.G1344.6 Capsicum annuum
CAN.G525.29 Capsicum annuum
CANSAT01G3290 Cannabis sativa
CARHR202810 Cardamine hirsuta
Carub.0006s0896 Capsella rubella
Ca_22603_v3 Cicer arietinum L.
Ca_22608_v3 Cicer arietinum L.
Cc07_g14130 Coffea canephora
CDE04G1055 Ceratophyllum demersum
CDE06G0701 Ceratophyllum demersum
Cfa006886 Carpinus fangiana
Cfa025929 Carpinus fangiana
CiPaw.07G047800 Carya illinoinensis
CiPaw.08G140000 Carya illinoinensis
ClCG10G007720 Citrullus lanatus
COL.COLO4_27351 Corchorus olitorius
Cpa.g.sc55.29 Carica papaya
Cre03.g167924 Chlamydomonas reinhardtii
Cre08.g363500 Chlamydomonas reinhardtii
CsaV3_3G006860 Cucumis sativus L.
CSS0009628 Camellia sinensis var. sinensis
DCAR_014186 Daucus carota
Dinv13605 Davidia involucrata
Dinv36926 Davidia involucrata
Duzib187G1704 Durio zibethinus
Duzib264G0362 Durio zibethinus
ECA238G4457 Erigeron canadensis
ECA246G1176 Erigeron canadensis
EL10Ac6g15209 Beta vulgaris
Eucgr.K02898 Eucalyptus grandis
FAN19G0871 Fragaria x ananassa
FAN19G1284 Fragaria x ananassa
FAN23G0465 Fragaria x ananassa
FAN26G2403 Fragaria x ananassa
FAN28G1749 Fragaria x ananassa
FvH4_1g19690 Fragaria vesca
Glyma.01G023400 Glycine max
Glyma.08G279700 Glycine max
Glyma.18G146900 Glycine max
Gohir.A11G206700 Gossypium hirsutum
Gohir.D11G216900 Gossypium hirsutum
Gorai.007G233000 Gossypium raimondii
GSVIVG01005931001 Vitis vinifera
HanXRQChr11g0346981 Helianthus annuus
HanXRQChr14g0442921 Helianthus annuus
Haze_03867 Corylus avellana
Hma1.2p1_0433F.1_g152050 Hydrangea macrophylla
HPP92_014310 Vanilla planifolia
Hund16535 Selenicereus undatus
Lalb_Chr05g0216341 Lupinus albus
Lalb_Chr16g0381641 Lupinus albus
Lalb_Chr16g0381651 Lupinus albus
Lj4g0019109 Lotus japonicus
Lju188A2T35 Lonicera japonica
Lsat_1_v5_gn_2_70580 Lactuca sativa
Lsat_1_v5_gn_3_62861 Lactuca sativa
Lsat_1_v5_gn_3_62901 Lactuca sativa
Manes.03G203600 Manihot esculenta
Manes.13G099500 Manihot esculenta
Mapoly0034s0103 Marchantia polymorpha
MBI16_g27585_MAGBIO Magnolia biondii
MCO05G519 Micromonas commoda
MCO16G529 Micromonas commoda
MD01G1038800 Malus domestica
MD04G1039300 Malus domestica
MD15G1312800 Malus domestica
MD15G1313000 Malus domestica
Medtr8g471160 Medicago truncatula
MELO3C016419.2 Cucumis melo
Migut.B00221 Erythranthe guttata
Nitab4.5_0000902g0360 Nicotiana tabacum
Nitab4.5_0001468g0120 Nicotiana tabacum
Nitab4.5_0004153g0110 Nicotiana tabacum
Nitab4.5_0009469g0010 Nicotiana tabacum
Nn1g05564 Nelumbo nucifera
Nn5g29888 Nelumbo nucifera
Oeu003728.1 Olea europaea
Oeu055598.1 Olea europaea
Os01g0150200 Oryza sativa ssp. japonica
Os01g0150400 Oryza sativa ssp. japonica
Os01g0150500 Oryza sativa ssp. japonica
Os01g0150800 Oryza sativa ssp. japonica
Os04g0271200 Oryza sativa ssp. japonica
Os08g0393600 Oryza sativa ssp. japonica
Peaxi162Scf00196g00225 Petunia axillaris
PGR031G0248 Punica granatum
PGSC0003DMG400016135 Solanum tuberosum
PGSC0003DMG400023576 Solanum tuberosum
Phvul.002G147400 Phaseolus vulgaris
Phvul.003G289100 Phaseolus vulgaris
Potri.007G010900 Populus trichocarpa
Pp3c17_11060 Physcomitrium patens
Pp3c2_13410 Physcomitrium patens
PRCOL_00000565 Prasinoderma coloniale
PRCOL_00006117 Prasinoderma coloniale
Prupe.6G201300 Prunus persica
Psat4g119600 Pisum sativum
PSO017G6956 Papaver somniferum
PSO170G2166 Papaver somniferum
PSO170G2632 Papaver somniferum
PSO170G6309 Papaver somniferum
PSO170G6456 Papaver somniferum
PSO541G1644 Papaver somniferum
QL06p035732 Quercus lobata
RcHm_v2.0_Chr2g0111251 Rosa chinensis
Rhsim08G0016400 Rhododendron simsii
Sabra07G0008400 Salix brachista
SalBow6G1994 Salvia bowleyana
Sc03g0000310 Simmondsia chinensis
Sed0019313 Sechium edule
SEGI_08262 Sequoiadendron giganteum
SEGI_19551 Sequoiadendron giganteum
SGA_v2.0_scaffold258G45740 Striga asiatica
SGA_v2.0_scaffold32G13177 Striga asiatica
SGA_v2.0_scaffold58G20514 Striga asiatica
SMO266G0038 Selaginella moellendorffii
Solyc04g014370.4 Solanum lycopersicum
Solyc11g010590.3 Solanum lycopersicum
Sopen04g006490 Solanum pennellii
Sopen11g005390 Solanum pennellii
Sp6g32950 Schrenkiella parvula
TAR381G0377 Trochodendron aralioides
TAR625G1314 Trochodendron aralioides
THA.LOC104798725 Tarenaya hassleriana
THA.LOC104819292 Tarenaya hassleriana
Thecc.01G091200 Theobroma cacao
Thhalv10014620m.g Eutrema salsugineum
TPR.G14596 Trifolium pratense
TWI53G1737 Tripterygium wilfordii
TWI74G1117 Tripterygium wilfordii
unitig_0.g838 Utricularia gibba
vmacro18559 Vaccinium macrocarpon
VMungo0251G2520 Vigna mungo
VMungo1215G0627 Vigna mungo
Zm00001eb124340 Zea mays
Zm00001eb335910 Zea mays

User provided reference genes

Program Settings