Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p46980 Brassica napus
Aa31LG11G2040 Aethionema arabicum
Actinidia19020 Actinidia chinensis
Actinidia35011 Actinidia chinensis
Actinidia37610 Actinidia chinensis
Actinidia37611 Actinidia chinensis
Ah.02g113730 Amaranthus hybridus
Ah.11g048230 Amaranthus hybridus
AL8G38050 Arabidopsis lyrata
Aqoxy3G03485 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2F1UPX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D90B1M Arachis hypogaea
AT5G61380 Arabidopsis thaliana
ATR0680G414 Amborella trichopoda
Atru.chr9.336 Acer truncatum
AUR62008459 Chenopodium quinoa
AUR62021636 Chenopodium quinoa
BcaB04g19909 Brassica carinata
BcaC04g23454 Brassica carinata
BcaC06g33245 Brassica carinata
BolC7t45025H Brassica oleracea
BolC9t53729H Brassica oleracea
BraA03t13822Z Brassica rapa
BraA09t36379Z Brassica rapa
C07p45020 Brassica napus
C09p08170 Brassica napus
CAN.G479.63 Capsicum annuum
CANSAT80G1069 Cannabis sativa
CARHR275140 Cardamine hirsuta
Carub.0008s2205 Capsella rubella
Ca_14691_v3 Cicer arietinum L.
Ca_21808_v3 Cicer arietinum L.
Ca_30947_v3 Cicer arietinum L.
Cc04_g14990 Coffea canephora
Cc04_g15190 Coffea canephora
CDE02G0803 Ceratophyllum demersum
CDE07G1945 Ceratophyllum demersum
CDE09G1270 Ceratophyllum demersum
Cfa018911 Carpinus fangiana
Ciclev10019534m.g Citrus clementina
CiPaw.11G047100 Carya illinoinensis
ClCG04G012090 Citrullus lanatus
COL.COLO4_36941 Corchorus olitorius
Cpa.g.sc13.294 Carica papaya
CsaV3_1G005680 Cucumis sativus L.
CSS0027901 Camellia sinensis var. sinensis
CSS0032055 Camellia sinensis var. sinensis
DCAR_016576 Daucus carota
DCAR_021519 Daucus carota
Dinv10652 Davidia involucrata
Dinv10653 Davidia involucrata
Dinv10655 Davidia involucrata
Dinv38743 Davidia involucrata
Duzib068G0503 Durio zibethinus
Duzib205G1832 Durio zibethinus
ECA247G3052 Erigeron canadensis
EL10Ac5g11059 Beta vulgaris
Eucgr.B00537 Eucalyptus grandis
FAN08G1337 Fragaria x ananassa
FAN12G0823 Fragaria x ananassa
FAN13G2746 Fragaria x ananassa
FAN18G1413 Fragaria x ananassa
FAN18G2514 Fragaria x ananassa
FvH4_5g14560 Fragaria vesca
FvH4_5g14580 Fragaria vesca
Glyma.04G166300 Glycine max
Glyma.05G025000 Glycine max
Glyma.06G196200 Glycine max
Glyma.17G102200 Glycine max
Gohir.A03G067700 Gossypium hirsutum
Gohir.D03G094200 Gossypium hirsutum
Gohir.D07G083200 Gossypium hirsutum
Gohir.D11G114700 Gossypium hirsutum
Gohir.D11G294700 Gossypium hirsutum
Gohir.D13G087700 Gossypium hirsutum
Gorai.001G126800 Gossypium raimondii
Gorai.003G098300 Gossypium raimondii
Gorai.005G145700 Gossypium raimondii
Gorai.007G317900 Gossypium raimondii
GSVIVG01007965001 Vitis vinifera
GSVIVG01007966001 Vitis vinifera
GSVIVG01007970001 Vitis vinifera
HanXRQChr02g0043181 Helianthus annuus
HanXRQChr08g0236661 Helianthus annuus
Hma1.2p1_0322F.1_g125070 Hydrangea macrophylla
HPP92_009069 Vanilla planifolia
Hund09823 Selenicereus undatus
Lalb_Chr07g0178171 Lupinus albus
Lalb_Chr07g0178181 Lupinus albus
Lalb_Chr08g0235491 Lupinus albus
Lj4g0002884 Lotus japonicus
Lj5A108G51 Lonicera japonica
Lj9C466G6 Lonicera japonica
Lsat_1_v5_gn_1_14320 Lactuca sativa
Lsat_1_v5_gn_5_21481 Lactuca sativa
Manes.06G089800 Manihot esculenta
Manes.14G081500 Manihot esculenta
Mapoly0085s0081 Marchantia polymorpha
MBI05_g22506_MAGBIO Magnolia biondii
MBI05_g41786_MAGBIO Magnolia biondii
MD06G1197300 Malus domestica
MD14G1204500 Malus domestica
MD14G1204700 Malus domestica
Medtr3g037390 Medicago truncatula
Medtr3g037450 Medicago truncatula
Medtr4g108880 Medicago truncatula
MELO3C001999.2 Cucumis melo
Migut.D01764 Erythranthe guttata
Migut.D01765 Erythranthe guttata
Migut.I00209 Erythranthe guttata
MSTRG.4440 Avicennia marina
MSTRG.9618 Avicennia marina
Nitab4.5_0001211g0280 Nicotiana tabacum
Nitab4.5_0003021g0100 Nicotiana tabacum
Nitab4.5_0005900g0090 Nicotiana tabacum
Nitab4.5_0010874g0010 Nicotiana tabacum
Nn2g10380 Nelumbo nucifera
Nn5g26927 Nelumbo nucifera
Oeu006383.1 Olea europaea
Oeu024449.1 Olea europaea
Oeu047002.2 Olea europaea
Oeu052453.1 Olea europaea
Os02g0618200 Oryza sativa ssp. japonica
Peaxi162Scf00274g00351 Petunia axillaris
PGR062G0001 Punica granatum
PGR083G0168 Punica granatum
PGSC0003DMG400019518 Solanum tuberosum
PGSC0003DMG400033048 Solanum tuberosum
Phvul.003G188400 Phaseolus vulgaris
Phvul.009G185500 Phaseolus vulgaris
Potri.015G061900 Populus trichocarpa
Prupe.5G197800 Prunus persica
Prupe.5G197900 Prunus persica
Prupe.5G198000 Prunus persica
Psat4g049800 Pisum sativum
Psat5g199360 Pisum sativum
PSO017G0340 Papaver somniferum
PSO063G5546 Papaver somniferum
PSO198G0128 Papaver somniferum
PSO478G1572 Papaver somniferum
QL10p017642 Quercus lobata
QL10p017674 Quercus lobata
RcHm_v2.0_Chr7g0181971 Rosa chinensis
RcHm_v2.0_Chr7g0181991 Rosa chinensis
RcHm_v2.0_Chr7g0182001 Rosa chinensis
Rhsim12G0154100 Rhododendron simsii
Sabra15G0086900 Salix brachista
SalBow7G4352 Salvia bowleyana
Sc12g0006500 Simmondsia chinensis
Sed0008795 Sechium edule
Sed0015977 Sechium edule
Sed0020767 Sechium edule
SEGI_11051 Sequoiadendron giganteum
SEGI_39489 Sequoiadendron giganteum
SGA_v2.0_scaffold313G48334 Striga asiatica
SMO358G0608 Selaginella moellendorffii
Solyc03g115770.3 Solanum lycopersicum
Solyc06g069690.4 Solanum lycopersicum
Sopen03g034750 Solanum pennellii
Sopen06g026990 Solanum pennellii
Sp2g24590 Schrenkiella parvula
TAR369G0188 Trochodendron aralioides
TAR623G0526 Trochodendron aralioides
TAR625G0726 Trochodendron aralioides
TAR629G1644 Trochodendron aralioides
THA.LOC104801462 Tarenaya hassleriana
Thecc.03G093700 Theobroma cacao
Thhalv10003924m.g Eutrema salsugineum
TPR.G11840 Trifolium pratense
TPR.G681 Trifolium pratense
TWI15G0625 Tripterygium wilfordii
TWI60G1095 Tripterygium wilfordii
unitig_0.g775 Utricularia gibba
unitig_60.g25802 Utricularia gibba
vmacro16524 Vaccinium macrocarpon
VMungo1215G0660 Vigna mungo
VMungo1309G1477 Vigna mungo
Zm00001eb096220 Zea mays
Zm00001eb247330 Zea mays

User provided reference genes

Program Settings