Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p38010 Brassica napus
A02p12990 Brassica napus
Aa31LG2G2240 Aethionema arabicum
Aa31LG8G3240 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.2448 Anthoceros agrestis
Actinidia18702 Actinidia chinensis
Ah.04g156820 Amaranthus hybridus
AL2G19680 Arabidopsis lyrata
AL3G28740 Arabidopsis lyrata
Aqoxy5G00370 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.7I89AX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.88Y1ZI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D4CCQ1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N502YT Arachis hypogaea
AT1G65040 Arabidopsis thaliana
AT3G16090 Arabidopsis thaliana
ATR0743G218 Amborella trichopoda
Atru.chr12.1980 Acer truncatum
AUR62005901 Chenopodium quinoa
AUR62028169 Chenopodium quinoa
BcaB04g20876 Brassica carinata
BcaB05g24075 Brassica carinata
BcaB05g24076 Brassica carinata
BcaB05g25320 Brassica carinata
BcaB05g25321 Brassica carinata
BcaC03g14671 Brassica carinata
BolC1t04785H Brassica oleracea
BolC2t08251H Brassica oleracea
BraA01t03860Z Brassica rapa
BraA02t06355Z Brassica rapa
C01p48220 Brassica napus
C02p21110 Brassica napus
CANSAT56G1448 Cannabis sativa
CARHR056530 Cardamine hirsuta
CARHR091250 Cardamine hirsuta
Carub.0002s1027 Capsella rubella
Carub.0003s1582 Capsella rubella
Ca_04923_v3 Cicer arietinum L.
Ca_24443_v3 Cicer arietinum L.
CBR_g8650 Chara braunii
Cc02_g00340 Coffea canephora
CDE03G0110 Ceratophyllum demersum
CDE06G2786 Ceratophyllum demersum
Cfa015874 Carpinus fangiana
Ciclev10019553m.g Citrus clementina
CiPaw.06G019100 Carya illinoinensis
ClCG10G009140 Citrullus lanatus
COL.COLO4_25305 Corchorus olitorius
Cpa.g.sc39.63 Carica papaya
Cpa.g.sc39.64 Carica papaya
Cpa.g.sc39.66 Carica papaya
Cre04.g217922 Chlamydomonas reinhardtii
Cre04.g217927 Chlamydomonas reinhardtii
Cre04.g217937 Chlamydomonas reinhardtii
CsaV3_2G004570 Cucumis sativus L.
CSS0003280 Camellia sinensis var. sinensis
CSS0006998 Camellia sinensis var. sinensis
DCAR_020405 Daucus carota
Dinv17262 Davidia involucrata
Dinv29163 Davidia involucrata
Duzib150G0049 Durio zibethinus
Duzib168G0937 Durio zibethinus
Duzib170G1103 Durio zibethinus
ECA233G5164 Erigeron canadensis
EL10Ac3g05086 Beta vulgaris
Eucgr.K00091 Eucalyptus grandis
FAN01G2295 Fragaria x ananassa
FAN03G3493 Fragaria x ananassa
FAN10G4058 Fragaria x ananassa
FvH4_7g33880 Fragaria vesca
Glyma.01G228500 Glycine max
Glyma.11G011300 Glycine max
Gohir.A08G007700 Gossypium hirsutum
Gohir.A09G104900 Gossypium hirsutum
Gohir.D08G017800 Gossypium hirsutum
Gohir.D09G101600 Gossypium hirsutum
Gorai.004G012200 Gossypium raimondii
Gorai.006G119000 Gossypium raimondii
GSVIVG01024416001 Vitis vinifera
HanXRQChr02g0048341 Helianthus annuus
HanXRQChr03g0062061 Helianthus annuus
HanXRQChr03g0062091 Helianthus annuus
HanXRQChr07g0191391 Helianthus annuus
Haze_00615 Corylus avellana
Hma1.2p1_0758F.1_g213660 Hydrangea macrophylla
HPP92_015263 Vanilla planifolia
Hund09783 Selenicereus undatus
Lalb_Chr01g0000961 Lupinus albus
Lalb_Chr09g0320231 Lupinus albus
Lalb_Chr19g0139931 Lupinus albus
Lj3A888T24 Lonicera japonica
Lj6g0012287 Lotus japonicus
LjContig00222g0027729 Lotus japonicus
Lsat_1_v5_gn_6_9400 Lactuca sativa
Manes.08G162800 Manihot esculenta
Manes.09G124700 Manihot esculenta
Mapoly0001s0157 Marchantia polymorpha
Mapoly0075s0067 Marchantia polymorpha
MBI04_g36030_MAGBIO Magnolia biondii
MCO04G127 Micromonas commoda
MCO15G602 Micromonas commoda
MD01G1235000 Malus domestica
MD01G1235300 Malus domestica
MD07G1307500 Malus domestica
MD07G1307700 Malus domestica
MD07G1308100 Malus domestica
Medtr4g077703 Medicago truncatula
Medtr4g077800 Medicago truncatula
Medtr5g007710 Medicago truncatula
MELO3C004334.2 Cucumis melo
Migut.E00064 Erythranthe guttata
Migut.L01227 Erythranthe guttata
MSTRG.13439 Avicennia marina
MSTRG.2325 Avicennia marina
MSTRG.7768 Avicennia marina
Nitab4.5_0000021g0440 Nicotiana tabacum
Nitab4.5_0000115g0380 Nicotiana tabacum
Nitab4.5_0002193g0030 Nicotiana tabacum
Nitab4.5_0014944g0010 Nicotiana tabacum
Nn1g01951 Nelumbo nucifera
Nn1g03292 Nelumbo nucifera
Nn3g19322 Nelumbo nucifera
Oeu017103.1 Olea europaea
Oeu027883.1 Olea europaea
Os06g0301000 Oryza sativa ssp. japonica
Peaxi162Scf00745g00863 Petunia axillaris
Peaxi162Scf00815g00355 Petunia axillaris
PGR142G0219 Punica granatum
PGSC0003DMG402027033 Solanum tuberosum
Phvul.002G039400 Phaseolus vulgaris
Potri.013G088400 Populus trichocarpa
Potri.019G051500 Populus trichocarpa
Pp3c16_2890 Physcomitrium patens
PRCOL_00002555 Prasinoderma coloniale
PRCOL_00004964 Prasinoderma coloniale
Prupe.2G325300 Prunus persica
Prupe.6G242100 Prunus persica
Psat2g188840 Pisum sativum
Psat7g171960 Pisum sativum
PSO063G1286 Papaver somniferum
PSO782G2664 Papaver somniferum
QL09p024519 Quercus lobata
RcHm_v2.0_Chr1g0384051 Rosa chinensis
RcHm_v2.0_Chr1g0384071 Rosa chinensis
RcHm_v2.0_Chr1g0384081 Rosa chinensis
Rhsim09G0212400 Rhododendron simsii
Sabra19G0057100 Salix brachista
Sc25g0001200 Simmondsia chinensis
Sed0012852 Sechium edule
Sed0014695 Sechium edule
SEGI_15145 Sequoiadendron giganteum
SGA_v2.0_scaffold287G47149 Striga asiatica
SGA_v2.0_scaffold36G14425 Striga asiatica
SMO116G0390 Selaginella moellendorffii
Solyc03g096930.4 Solanum lycopersicum
Solyc06g072790.3 Solanum lycopersicum
Sopen03g027680 Solanum pennellii
Sopen06g029170 Solanum pennellii
Sp3g14440 Schrenkiella parvula
Sp5g19570 Schrenkiella parvula
TAR374G1229 Trochodendron aralioides
THA.LOC104821768 Tarenaya hassleriana
THA.LOC104823803 Tarenaya hassleriana
Thecc.09G264400 Theobroma cacao
Thhalv10020585m.g Eutrema salsugineum
Thhalv10022466m.g Eutrema salsugineum
TPR.G37898 Trifolium pratense
TPR.G40787 Trifolium pratense
TWI34G1659 Tripterygium wilfordii
unitig_52.g17166 Utricularia gibba
unitig_62.g23692 Utricularia gibba
vmacro06507 Vaccinium macrocarpon
vmacro10187 Vaccinium macrocarpon
VMungo1215G1922 Vigna mungo
Zm00001eb092590 Zea mays
Zm00001eb197180 Zea mays
Zm00001eb374980 Zea mays
Zm00001eb410280 Zea mays
Zm00001eb434600 Zea mays

User provided reference genes

Program Settings