Gene: AT1G65040

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G65040
  • Transcript Identifier AT1G65040.2
  • Gene Type Coding gene
  • Location Chr1 : 24160105-24163365 : negative

Gene Family Information

  • ID HOM05D003872
  • #Genes/#Species 179/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G65040.2
  • symbol Hrd1B
  • Alias AtHrd1B,homolog of yeast Hrd1
  • full_name homolog of yeast Hrd1
  • uniprot Q6NPT7

Descriptions

  • Description RING/U-box superfamily protein
  • Computational description RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G16090.1); Has 7722 Blast hits to 7710 proteins in 269 species: Archae - 0; Bacteria - 0; Metazoa - 2325; Fungi - 695; Plants - 3566; Viruses - 25; Other Eukaryotes - 1111 (source: NCBI BLink).
  • Computational description RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G16090.1); Has 7762 Blast hits to 7743 proteins in 269 species: Archae - 0; Bacteria - 0; Metazoa - 2332; Fungi - 714; Plants - 3566; Viruses - 25; Other Eukaryotes - 1125 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016567
IEA
Gene Ontologyprotein ubiquitination
GO:0030433
IMP
Gene Ontologyubiquitin-dependent ERAD pathway1
GO:0006511
IBA
Gene Ontologyubiquitin-dependent protein catabolic process2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0061630
IBA
Gene Ontologyubiquitin protein ligase activity2
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0016740
IEA
GOA Databasetransferase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
ISM
Gene Ontologymitochondrion
GO:0005789
IEA
GOA Databaseendoplasmic reticulum membrane
GO:0005886
IDA
GOA Databaseplasma membrane
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0016020
IEA
GOA Databasemembrane
GO:0005783
IEA
GOA Databaseendoplasmic reticulum

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001841 Zinc finger, RING-type
IPR013083 Zinc finger, RING/FYVE/PHD-type
Mapman id Description
19.2.4.2.1.1 Protein homeostasis.ubiquitin-proteasome system.membrane-associated protein degradation.ER-associated protein degradation (ERAD).HRD1 E3 ubiquitin ligase complex.E3 ubiquitin ligase component HRD1