Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p34540 Brassica napus
Aa31LG2G6140 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.5836 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.590 Anthoceros agrestis
Actinidia37443 Actinidia chinensis
AL5G15150 Arabidopsis lyrata
Aqoxy3G01254 Aquilegia oxysepala
Aqoxy515s001 Aquilegia oxysepala
Aqoxy5G03710 Aquilegia oxysepala
Aqoxy5G03712 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.5678GR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6M8RVH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9A08C8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CUSE89 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H4Q06R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ISLL24 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JIIR6A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MI3564 Arachis hypogaea
AT3G26380 Arabidopsis thaliana
ATR0824G097 Amborella trichopoda
ATR0824G135 Amborella trichopoda
ATR0824G255 Amborella trichopoda
Atru.chr11.2161 Acer truncatum
AUR62005279 Chenopodium quinoa
AUR62005500 Chenopodium quinoa
AUR62024240 Chenopodium quinoa
BcaB07g30230 Brassica carinata
BcaC03g17337 Brassica carinata
BolC2t11365H Brassica oleracea
BraA02t08464Z Brassica rapa
C02p52860 Brassica napus
CAN.G272.4 Capsicum annuum
CANSAT01G0511 Cannabis sativa
CARHR147390 Cardamine hirsuta
Carub.0005s0430 Capsella rubella
Ca_17782_v3 Cicer arietinum L.
Ca_25137_v3 Cicer arietinum L.
Cc01_g04790 Coffea canephora
Cc01_g04800 Coffea canephora
Cc11_g15940 Coffea canephora
Cc11_g15950 Coffea canephora
CDE02G4268 Ceratophyllum demersum
Cfa009233 Carpinus fangiana
Ciclev10003125m.g Citrus clementina
Ciclev10030938m.g Citrus clementina
Ciclev10033489m.g Citrus clementina
CiPaw.05G179800 Carya illinoinensis
CiPaw.11G025500 Carya illinoinensis
ClCG08G017630 Citrullus lanatus
COL.COLO4_23483 Corchorus olitorius
Cpa.g.sc33.46 Carica papaya
CsaV3_2G025010 Cucumis sativus L.
CSS0009419 Camellia sinensis var. sinensis
DCAR_029363 Daucus carota
Dinv14737 Davidia involucrata
Duzib251G0748 Durio zibethinus
Duzib268G0493 Durio zibethinus
ECA233G4229 Erigeron canadensis
EL10Ac6g13871 Beta vulgaris
Eucgr.H02477 Eucalyptus grandis
Eucgr.H02478 Eucalyptus grandis
Eucgr.H02479 Eucalyptus grandis
Eucgr.H02480 Eucalyptus grandis
FAN04G1499 Fragaria x ananassa
FAN05G1630 Fragaria x ananassa
FAN05G3491 Fragaria x ananassa
FAN07G2501 Fragaria x ananassa
FAN09G1504 Fragaria x ananassa
FAN12G2341 Fragaria x ananassa
FAN12G3248 Fragaria x ananassa
FAN14G4241 Fragaria x ananassa
FAN14G5485 Fragaria x ananassa
FvH4_4g25930 Fragaria vesca
FvH4_6g05560 Fragaria vesca
Glyma.02G267600 Glycine max
Glyma.02G267700 Glycine max
Glyma.05G174200 Glycine max
Glyma.08G131400 Glycine max
Glyma.11G243600 Glycine max
Glyma.14G049900 Glycine max
Glyma.18G013500 Glycine max
Gohir.A03G133100 Gossypium hirsutum
Gohir.A03G133105 Gossypium hirsutum
Gohir.D02G157400 Gossypium hirsutum
Gorai.005G176600 Gossypium raimondii
GSVIVG01000554001 Vitis vinifera
HanXRQChr08g0208381 Helianthus annuus
Haze_07805 Corylus avellana
Haze_12269 Corylus avellana
HPP92_023360 Vanilla planifolia
HPP92_023372 Vanilla planifolia
HPP92_023373 Vanilla planifolia
Hund06039 Selenicereus undatus
Lalb_Chr04g0250041 Lupinus albus
Lalb_Chr04g0250051 Lupinus albus
Lalb_Chr04g0250061 Lupinus albus
Lalb_Chr04g0250071 Lupinus albus
Lalb_Chr04g0250081 Lupinus albus
Lalb_Chr04g0250091 Lupinus albus
Lalb_Chr04g0250101 Lupinus albus
Lalb_Chr07g0185431 Lupinus albus
Lalb_Chr23g0277621 Lupinus albus
Lj3A1060T75 Lonicera japonica
Lj3C275T6 Lonicera japonica
Lj3P287T13 Lonicera japonica
Lj4g0008357 Lotus japonicus
Lj6C814T12 Lonicera japonica
Lj6g0024639 Lotus japonicus
LjContig00029g0017310 Lotus japonicus
Lju551A3T2 Lonicera japonica
Lsat_1_v5_gn_8_152721 Lactuca sativa
Manes.13G022100 Manihot esculenta
Mapoly0016s0175 Marchantia polymorpha
Mapoly0033s0125 Marchantia polymorpha
MBI19_g09304_MAGBIO Magnolia biondii
MD13G1098300 Malus domestica
MD13G1098400 Malus domestica
MD16G1099400 Malus domestica
Medtr2g096530 Medicago truncatula
Medtr3g086580 Medicago truncatula
Medtr8g089725 Medicago truncatula
Medtr8g089735 Medicago truncatula
Medtr8g089740 Medicago truncatula
Medtr8g089745 Medicago truncatula
Medtr8g089780 Medicago truncatula
MELO3C010698.2 Cucumis melo
Migut.K00614 Erythranthe guttata
MSTRG.7949 Avicennia marina
Nitab4.5_0000229g0100 Nicotiana tabacum
Nitab4.5_0002787g0030 Nicotiana tabacum
Nn3g16675 Nelumbo nucifera
Nn3g19598 Nelumbo nucifera
Nn4g22564 Nelumbo nucifera
Oeu057546.1 Olea europaea
Os01g0518500 Oryza sativa ssp. japonica
Peaxi162Scf00128g00456 Petunia axillaris
PGR119G1467 Punica granatum
PGSC0003DMG400011728 Solanum tuberosum
Phvul.001G255500 Phaseolus vulgaris
Phvul.002G259200 Phaseolus vulgaris
Phvul.008G214500 Phaseolus vulgaris
Potri.008G185300 Populus trichocarpa
Potri.010G048300 Populus trichocarpa
Potri.010G048400 Populus trichocarpa
Pp3c11_18080 Physcomitrium patens
Prupe.1G247000 Prunus persica
Psat5g091760 Pisum sativum
Psat7g058680 Pisum sativum
PSO017G1803 Papaver somniferum
PSO017G3539 Papaver somniferum
PSO067G0007 Papaver somniferum
PSO478G4543 Papaver somniferum
QL03p056989 Quercus lobata
QL03p057097 Quercus lobata
QL03p057108 Quercus lobata
QL03p057114 Quercus lobata
QL03p057135 Quercus lobata
QL03p057155 Quercus lobata
QL03p057161 Quercus lobata
QL03p057173 Quercus lobata
QL03p057181 Quercus lobata
QL08p013016 Quercus lobata
QL08p013018 Quercus lobata
QL08p013031 Quercus lobata
QL08p013034 Quercus lobata
RcHm_v2.0_Chr3g0454341 Rosa chinensis
RcHm_v2.0_Chr4g0433401 Rosa chinensis
Sabra08G0140300 Salix brachista
Sabra08G0162900 Salix brachista
Sabra10G0020500 Salix brachista
SalBow2G2300 Salvia bowleyana
SalBow2G3613 Salvia bowleyana
Sc14g0008780 Simmondsia chinensis
Sed0021427 Sechium edule
SEGI_05831 Sequoiadendron giganteum
SEGI_30194 Sequoiadendron giganteum
SEGI_37368 Sequoiadendron giganteum
SGA_v2.0_scaffold100G29574 Striga asiatica
SGA_v2.0_scaffold71G23972 Striga asiatica
SMO147G0306 Selaginella moellendorffii
SMO164G0149 Selaginella moellendorffii
SMO238G0039 Selaginella moellendorffii
SMO356G0596 Selaginella moellendorffii
Solyc05g013720.3 Solanum lycopersicum
Sopen05g008640 Solanum pennellii
Sp2g15530 Schrenkiella parvula
TAR622G1186 Trochodendron aralioides
THA.LOC104805279 Tarenaya hassleriana
Thecc.02G263100 Theobroma cacao
Thhalv10003806m.g Eutrema salsugineum
TPR.G15855 Trifolium pratense
TPR.G30530 Trifolium pratense
TPR.G6223 Trifolium pratense
TPR.G6289 Trifolium pratense
TPR.G6291 Trifolium pratense
TWI18G0898 Tripterygium wilfordii
TWI36G0326 Tripterygium wilfordii
TWI36G1577 Tripterygium wilfordii
unitig_22.g6428 Utricularia gibba
vmacro16179 Vaccinium macrocarpon
VMungo0647G2422 Vigna mungo
VMungo1383G0093 Vigna mungo
VMungo1383G2745 Vigna mungo
Zm00001eb409230 Zea mays

User provided reference genes

Program Settings