Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p30960 Brassica napus
A09p08590 Brassica napus
Aa31LG1G17630 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.2841 Anthoceros agrestis
Actinidia15649 Actinidia chinensis
Actinidia17683 Actinidia chinensis
Actinidia28117 Actinidia chinensis
Actinidia37731 Actinidia chinensis
Actinidia38769 Actinidia chinensis
Actinidia38788 Actinidia chinensis
Actinidia38789 Actinidia chinensis
Ah.05g172970 Amaranthus hybridus
Ah.05g175190 Amaranthus hybridus
AL8G41630 Arabidopsis lyrata
Aqoxy1G02836 Aquilegia oxysepala
Aqoxy1G02838 Aquilegia oxysepala
Aqoxy2G00351 Aquilegia oxysepala
Aqoxy3G02504 Aquilegia oxysepala
Aqoxy4G01165 Aquilegia oxysepala
Aqoxy5G03430 Aquilegia oxysepala
Aqoxy6G00957 Aquilegia oxysepala
Aqoxy7G00613 Aquilegia oxysepala
Aqoxy7G00614 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4W8ZMG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6856EH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8HD4Y1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PVIH4H Arachis hypogaea
AT5G64270 Arabidopsis thaliana
ATR0307G103 Amborella trichopoda
ATR0618G025 Amborella trichopoda
ATR0618G293 Amborella trichopoda
Atru.chr2.3187 Acer truncatum
Atru.chr2.3199 Acer truncatum
Atru.chr7.2124 Acer truncatum
Atru.chr7.2125 Acer truncatum
AUR62004235 Chenopodium quinoa
AUR62007850 Chenopodium quinoa
AUR62013613 Chenopodium quinoa
AUR62032335 Chenopodium quinoa
BcaB04g19962 Brassica carinata
BcaB04g19963 Brassica carinata
BcaB04g19964 Brassica carinata
BolC3t18459H Brassica oleracea
BolC9t53882H Brassica oleracea
BraA06t26038Z Brassica rapa
BraA09t36508Z Brassica rapa
C03p62000 Brassica napus
C03p62010 Brassica napus
C09p09710 Brassica napus
CAN.G128.100 Capsicum annuum
CAN.G128.160 Capsicum annuum
CAN.G128.99 Capsicum annuum
CANSAT01G3215 Cannabis sativa
CARHR278180 Cardamine hirsuta
Carub.0008s2506 Capsella rubella
Carub.0013s0010 Capsella rubella
Ca_00144_v3 Cicer arietinum L.
CBR_g21841 Chara braunii
CBR_g38933 Chara braunii
Cc02_g08750 Coffea canephora
Cc02_g31230 Coffea canephora
Cc09_g09140 Coffea canephora
CDE02G2072 Ceratophyllum demersum
CDE09G0434 Ceratophyllum demersum
Cfa022297 Carpinus fangiana
Ciclev10010658m.g Citrus clementina
CiPaw.16G001600 Carya illinoinensis
CiPaw.16G001700 Carya illinoinensis
ClCG10G009340 Citrullus lanatus
COL.COLO4_32308 Corchorus olitorius
COL.COLO4_32309 Corchorus olitorius
Cpa.g.sc1387.1 Carica papaya
Cre12.g494100 Chlamydomonas reinhardtii
CsaV3_4G009520 Cucumis sativus L.
CSS0000201 Camellia sinensis var. sinensis
CSS0001529 Camellia sinensis var. sinensis
CSS0033238 Camellia sinensis var. sinensis
CSS0044491 Camellia sinensis var. sinensis
DCAR_017866 Daucus carota
DCAR_017867 Daucus carota
DCAR_024485 Daucus carota
DCAR_026292 Daucus carota
DCAR_026599 Daucus carota
DCAR_028101 Daucus carota
DCAR_028103 Daucus carota
Dinv04117 Davidia involucrata
Dinv04118 Davidia involucrata
Dinv23897 Davidia involucrata
Dinv23905 Davidia involucrata
Duzib052G0048 Durio zibethinus
ECA233G4363 Erigeron canadensis
EL10Ac1g00935 Beta vulgaris
Eucgr.I02637 Eucalyptus grandis
Eucgr.L00513 Eucalyptus grandis
FAN11G1592 Fragaria x ananassa
FAN15G1682 Fragaria x ananassa
FAN20G2309 Fragaria x ananassa
FAN21G2367 Fragaria x ananassa
FAN24G1613 Fragaria x ananassa
FAN27G2201 Fragaria x ananassa
FvH4_2g14010 Fragaria vesca
FvH4_3g24440 Fragaria vesca
FvH4_4g00110 Fragaria vesca
Glyma.13G229200 Glycine max
Glyma.15G083300 Glycine max
Gohir.A12G015800 Gossypium hirsutum
Gohir.D12G016100 Gossypium hirsutum
Gorai.008G016300 Gossypium raimondii
GSVIVG01025852001 Vitis vinifera
HanXRQChr02g0058761 Helianthus annuus
HanXRQChr07g0185681 Helianthus annuus
Haze_07018 Corylus avellana
Haze_17408 Corylus avellana
Haze_26699 Corylus avellana
Hma1.2p1_0996F.1_g245870 Hydrangea macrophylla
HPP92_010359 Vanilla planifolia
HPP92_010380 Vanilla planifolia
HPP92_010381 Vanilla planifolia
HPP92_010409 Vanilla planifolia
HPP92_019915 Vanilla planifolia
Lalb_Chr15g0090381 Lupinus albus
Lalb_Chr18g0060491 Lupinus albus
Lj3P537T27 Lonicera japonica
Lj3P547T47 Lonicera japonica
Lj6g0000948 Lotus japonicus
Lsat_1_v5_gn_6_59920 Lactuca sativa
Manes.10G104400 Manihot esculenta
Mapoly0134s0023 Marchantia polymorpha
MBI04_g36083_MAGBIO Magnolia biondii
MBI14_g36930_MAGBIO Magnolia biondii
MCO09G793 Micromonas commoda
MD12G1233800 Malus domestica
MD12G1233900 Malus domestica
MD17G1162000 Malus domestica
MD17G1162100 Malus domestica
Medtr2g009090 Medicago truncatula
Medtr2g009110 Medicago truncatula
MELO3C024822.2 Cucumis melo
Migut.D02560 Erythranthe guttata
Migut.J01608 Erythranthe guttata
MSTRG.6294 Avicennia marina
Nitab4.5_0000062g0290 Nicotiana tabacum
Nitab4.5_0000794g0150 Nicotiana tabacum
Nitab4.5_0002746g0040 Nicotiana tabacum
Nitab4.5_0003286g0010 Nicotiana tabacum
Nn4g23295 Nelumbo nucifera
Oeu042069.1 Olea europaea
Oeu052036.1 Olea europaea
Oeu060755.1 Olea europaea
Os02g0142300 Oryza sativa ssp. japonica
Os02g0146400 Oryza sativa ssp. japonica
Os02g0147300 Oryza sativa ssp. japonica
Os02g0478900 Oryza sativa ssp. japonica
Peaxi162Scf00153g00138 Petunia axillaris
Peaxi162Scf00541g00066 Petunia axillaris
Peaxi162Scf00920g00062 Petunia axillaris
PGR142G4455 Punica granatum
PGSC0003DMG400009195 Solanum tuberosum
PGSC0003DMG400019022 Solanum tuberosum
PGSC0003DMG400028106 Solanum tuberosum
PGSC0003DMG400040134 Solanum tuberosum
PGSC0003DMG400043641 Solanum tuberosum
Phvul.006G175600 Phaseolus vulgaris
Potri.001G310900 Populus trichocarpa
Potri.017G050800 Populus trichocarpa
Pp3c11_14450 Physcomitrium patens
Pp3c7_19180 Physcomitrium patens
Pp3c8_13960 Physcomitrium patens
PRCOL_00002641 Prasinoderma coloniale
Prupe.8G065000 Prunus persica
Psat1g216360 Pisum sativum
Psat4g019320 Pisum sativum
PSO063G3636 Papaver somniferum
PSO832G0894 Papaver somniferum
QL09p053393 Quercus lobata
QL12p003834 Quercus lobata
RcHm_v2.0_Chr2g0106841 Rosa chinensis
RcHm_v2.0_Chr5g0043931 Rosa chinensis
RcHm_v2.0_Chr5g0043941 Rosa chinensis
RcHm_v2.0_Chr6g0275901 Rosa chinensis
Rhsim04G0090100 Rhododendron simsii
Rhsim04G0092700 Rhododendron simsii
Rhsim04G0095500 Rhododendron simsii
Rhsim09G0053300 Rhododendron simsii
RhsimUnG0019800 Rhododendron simsii
RhsimUnG0029100 Rhododendron simsii
Sabra16G0196500 Salix brachista
Sabra17G0037200 Salix brachista
Sabra17G0042500 Salix brachista
Sc13g0006780 Simmondsia chinensis
Sc25g0002420 Simmondsia chinensis
Sed0019948 Sechium edule
SEGI_10823 Sequoiadendron giganteum
SEGI_22402 Sequoiadendron giganteum
SGA_v2.0_scaffold106G30555 Striga asiatica
SHI54885 Sapria himalayana
SMO134G0059 Selaginella moellendorffii
SMO361G0072 Selaginella moellendorffii
SMO361G0653 Selaginella moellendorffii
SMO367G1175 Selaginella moellendorffii
Solyc07g041790.1 Solanum lycopersicum
Solyc10g081290.2 Solanum lycopersicum
Sopen07g021280 Solanum pennellii
Sopen10g031590 Solanum pennellii
Sopen10g031790 Solanum pennellii
Sp2g27330 Schrenkiella parvula
TAR629G3161 Trochodendron aralioides
TAR636G3251 Trochodendron aralioides
THA.LOC104799861 Tarenaya hassleriana
Thecc.02G134200 Theobroma cacao
Thhalv10005618m.g Eutrema salsugineum
Thhalv10024248m.g Eutrema salsugineum
TPR.G10901 Trifolium pratense
TPR.G36215 Trifolium pratense
TPR.G40556 Trifolium pratense
TWI23G0442 Tripterygium wilfordii
TWI59G0520 Tripterygium wilfordii
unitig_744.g24164 Utricularia gibba
vmacro02485 Vaccinium macrocarpon
vmacro07762 Vaccinium macrocarpon
VMungo0540G2012 Vigna mungo
Zm00001eb208060 Zea mays
Zm00001eb232170 Zea mays

User provided reference genes

Program Settings