Gene: AT5G64270

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G64270
  • Transcript Identifier AT5G64270.1
  • Gene Type Coding gene
  • Location Chr5 : 25706909-25710718 : positive

Gene Family Information

  • ID HOM05D003084
  • #Genes/#Species 223/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G64270.1
  • uniprot Q9FMF9

Descriptions

  • Description splicing factor
  • Computational description splicing factor, putative; FUNCTIONS IN: binding; INVOLVED IN: mRNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Splicing factor 3B subunit 1 (InterPro:IPR015016), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000245
IEA
GOA Databasespliceosomal complex assembly
GO:0000245
IBA
Gene Ontologyspliceosomal complex assembly1
GO:0000245
IEA
InterProspliceosomal complex assembly

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IEA
GOA DatabasemRNA binding
GO:0003729
IBA
Gene OntologymRNA binding1
GO:0003729
IEA
InterPromRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005829
RCA
Gene Ontologycytosol2
GO:0009536
HDA
Gene Ontologyplastid3
GO:0071004
IBA
Gene OntologyU2-type prespliceosome1
GO:0071013
IBA
Gene Ontologycatalytic step 2 spliceosome1
GO:0005689
IBA
Gene OntologyU12-type spliceosomal complex1
GO:0005686
IBA
Gene OntologyU2 snRNP1
GO:0005681
IEA
GOA Databasespliceosomal complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR038737 Splicing factor 3B subunit 1-like
IPR011989 Armadillo-like helical
IPR016024 Armadillo-type fold
IPR015016 Splicing factor 3B subunit 1
IPR034085 TOG domain
Mapman id Description
16.2.1.2.4.1 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.component SF3B1