Gene: PGSC0003DMG400028106

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG400028106
  • Transcript Identifier PGSC0003DMT400072223
  • Gene Type Coding gene
  • Location ST4.03ch10 : 56843996-56847775 : negative

Gene Family Information

  • ID HOM05D003084
  • #Genes/#Species 223/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37478512
  • id PGSC0003DMG400028106.v4.03
  • uniprot M1CPW3

Descriptions

  • Description Splicing factor
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000245
IBA
IEA
GOA Databasespliceosomal complex assembly
GO:0000245
IEA
InterProspliceosomal complex assembly

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IBA
IEA
GOA DatabasemRNA binding
GO:0003729
IEA
InterPromRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0071013
IBA
GOA Databasecatalytic step 2 spliceosome
GO:0071004
IBA
GOA DatabaseU2-type prespliceosome
GO:0005689
IBA
GOA DatabaseU12-type spliceosomal complex
GO:0005686
IBA
GOA DatabaseU2 snRNP

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR016024 Armadillo-type fold
IPR034085 TOG domain
IPR011989 Armadillo-like helical
IPR015016 Splicing factor 3B subunit 1
IPR038737 Splicing factor 3B subunit 1-like
Mapman id Description
16.2.1.2.4.1 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.component SF3B1