Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p36740 Brassica napus
A02p00920 Brassica napus
A03p40270 Brassica napus
A05p32230 Brassica napus
A10p26460 Brassica napus
Aa31LG3G15930 Aethionema arabicum
Aa31LG8G4480 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.387 Anthoceros agrestis
Actinidia13247 Actinidia chinensis
Actinidia14615 Actinidia chinensis
Actinidia15681 Actinidia chinensis
Actinidia22358 Actinidia chinensis
Ah.12g064060 Amaranthus hybridus
Ah.13g073070 Amaranthus hybridus
AL3G30680 Arabidopsis lyrata
AL6G21890 Arabidopsis lyrata
Aqoxy2G02426 Aquilegia oxysepala
Aqoxy7G02115 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.7JYX6X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8U3XLV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BII4R6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C14L30 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VW4TEM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XZ9EX0 Arachis hypogaea
AT3G17609 Arabidopsis thaliana
AT5G11260 Arabidopsis thaliana
ATR0796G308 Amborella trichopoda
ATR1156G010 Amborella trichopoda
Atru.chr4.3191 Acer truncatum
Atru.chr7.2391 Acer truncatum
AUR62002522 Chenopodium quinoa
AUR62023672 Chenopodium quinoa
AUR62024899 Chenopodium quinoa
AUR62030640 Chenopodium quinoa
BcaB04g18954 Brassica carinata
BcaB04g20834 Brassica carinata
BcaB06g25832 Brassica carinata
BcaC01g03747 Brassica carinata
BcaC01g03748 Brassica carinata
BcaC05g28770 Brassica carinata
BcaC09g48716 Brassica carinata
BolC1t04632H Brassica oleracea
BolC2t06452H Brassica oleracea
BolC3t17177H Brassica oleracea
BolC5t33613H Brassica oleracea
BolC9t59384H Brassica oleracea
BraA01t03735Z Brassica rapa
BraA02t05076Z Brassica rapa
BraA05t22053Z Brassica rapa
C01p46650 Brassica napus
C02p04940 Brassica napus
C03p48970 Brassica napus
C05p48770 Brassica napus
CAN.G317.1 Capsicum annuum
CANSAT25G2215 Cannabis sativa
CARHR092920 Cardamine hirsuta
CARHR202000 Cardamine hirsuta
CARHR202040 Cardamine hirsuta
Carub.0003s1732 Capsella rubella
Carub.0006s0973 Capsella rubella
Ca_05136_v3 Cicer arietinum L.
Ca_18256_v3 Cicer arietinum L.
Ca_26349_v3 Cicer arietinum L.
CBR_g22875 Chara braunii
Cc08_g00930 Coffea canephora
CDE01G0364 Ceratophyllum demersum
CDE02G0788 Ceratophyllum demersum
CDE02G3898 Ceratophyllum demersum
CDE05G2009 Ceratophyllum demersum
CDE06G2210 Ceratophyllum demersum
CDE07G1565 Ceratophyllum demersum
CDE11G0118 Ceratophyllum demersum
Cfa013170 Carpinus fangiana
Ciclev10009720m.g Citrus clementina
CiPaw.01G127000 Carya illinoinensis
CiPaw.07G221500 Carya illinoinensis
CiPaw.08G012600 Carya illinoinensis
ClCG05G017050 Citrullus lanatus
ClCG08G013230 Citrullus lanatus
COL.COLO4_23973 Corchorus olitorius
Cpa.g.sc115.9 Carica papaya
Cre05.g238250 Chlamydomonas reinhardtii
Cre06.g310500 Chlamydomonas reinhardtii
CsaV3_2G031960 Cucumis sativus L.
CsaV3_3G046530 Cucumis sativus L.
CSS0048476 Camellia sinensis var. sinensis
DCAR_003095 Daucus carota
DCAR_030415 Daucus carota
Dinv15964 Davidia involucrata
Dinv18232 Davidia involucrata
Dinv30163 Davidia involucrata
Duzib168G0974 Durio zibethinus
Duzib187G1164 Durio zibethinus
ECA233G5819 Erigeron canadensis
ECA246G3899 Erigeron canadensis
EL10Ac2g02610 Beta vulgaris
Eucgr.B02198 Eucalyptus grandis
Eucgr.C02802 Eucalyptus grandis
FAN07G2171 Fragaria x ananassa
FAN12G2440 Fragaria x ananassa
FAN17G1668 Fragaria x ananassa
FAN20G2840 Fragaria x ananassa
FAN24G0610 Fragaria x ananassa
FAN27G1734 Fragaria x ananassa
FvH4_2g29440 Fragaria vesca
FvH4_4g21800 Fragaria vesca
Glyma.03G081700 Glycine max
Glyma.08G302500 Glycine max
Glyma.16G092700 Glycine max
Glyma.18G117100 Glycine max
Gohir.A08G236500 Gossypium hirsutum
Gohir.D08G257100 Gossypium hirsutum
Gorai.004G274100 Gossypium raimondii
GSVIVG01017714001 Vitis vinifera
GSVIVG01035829001 Vitis vinifera
HanXRQChr02g0050461 Helianthus annuus
HanXRQChr13g0403431 Helianthus annuus
Haze_00746 Corylus avellana
Haze_21543 Corylus avellana
HPP92_005149 Vanilla planifolia
HPP92_010869 Vanilla planifolia
HPP92_023165 Vanilla planifolia
HPP92_024600 Vanilla planifolia
HPP92_026248 Vanilla planifolia
Hund05826 Selenicereus undatus
Hund12268 Selenicereus undatus
Lalb_Chr18g0049281 Lupinus albus
Lalb_Chr19g0125631 Lupinus albus
Lj3g0018693 Lotus japonicus
Lj6g0022439 Lotus japonicus
Lj8A668G28 Lonicera japonica
Lj8A672T11 Lonicera japonica
Lj8A679T19 Lonicera japonica
Lsat_1_v5_gn_5_30441 Lactuca sativa
Lsat_1_v5_gn_6_22420 Lactuca sativa
Manes.12G040300 Manihot esculenta
Manes.16G120300 Manihot esculenta
Mapoly0001s0021 Marchantia polymorpha
MBI01_g37815_MAGBIO Magnolia biondii
MBI18_g03851_MAGBIO Magnolia biondii
MBI18_g28909_MAGBIO Magnolia biondii
MCO11G825 Micromonas commoda
MD08G1147100 Malus domestica
MD16G1132200 Malus domestica
Medtr3g436010 Medicago truncatula
Medtr7g057160 Medicago truncatula
MELO3C003686.2 Cucumis melo
MELO3C011250.2 Cucumis melo
Migut.A00054 Erythranthe guttata
Migut.E01790 Erythranthe guttata
MSTRG.14090 Avicennia marina
MSTRG.1716 Avicennia marina
MSTRG.25997 Avicennia marina
Nitab4.5_0002007g0060 Nicotiana tabacum
Nitab4.5_0009676g0030 Nicotiana tabacum
Nn2g11976 Nelumbo nucifera
Nn4g25307 Nelumbo nucifera
Nn8g39399 Nelumbo nucifera
Oeu024201.1 Olea europaea
Oeu042677.1 Olea europaea
Os01g0174000 Oryza sativa ssp. japonica
Os02g0203000 Oryza sativa ssp. japonica
Os06g0601500 Oryza sativa ssp. japonica
Peaxi162Scf00073g01119 Petunia axillaris
PGR031G2808 Punica granatum
PGR044G2450 Punica granatum
PGSC0003DMG401020784 Solanum tuberosum
Phvul.006G029200 Phaseolus vulgaris
Phvul.008G126437 Phaseolus vulgaris
Phvul.010G018200 Phaseolus vulgaris
Potri.006G251800 Populus trichocarpa
Potri.010G004200 Populus trichocarpa
Potri.018G029500 Populus trichocarpa
Pp3c11_17710 Physcomitrium patens
Pp3c7_11360 Physcomitrium patens
PRCOL_00005164 Prasinoderma coloniale
Prupe.1G208500 Prunus persica
Prupe.1G478400 Prunus persica
Psat3g145920 Pisum sativum
Psat5g115640 Pisum sativum
Psat5g181280 Pisum sativum
PSO170G2824 Papaver somniferum
PSO455G0037 Papaver somniferum
PSO761G0229 Papaver somniferum
QL02p022301 Quercus lobata
QL06p014769 Quercus lobata
RcHm_v2.0_Chr4g0428031 Rosa chinensis
RcHm_v2.0_Chr6g0298231 Rosa chinensis
Rhsim02G0199000 Rhododendron simsii
Sabra06G0196800 Salix brachista
Sabra10G0003600 Salix brachista
Sabra18G0031500 Salix brachista
SalBow1G4423 Salvia bowleyana
SalBow4G1537 Salvia bowleyana
Sc09g0008360 Simmondsia chinensis
Sed0006241 Sechium edule
Sed0006991 Sechium edule
Sed0012522 Sechium edule
SEGI_01317 Sequoiadendron giganteum
SEGI_11296 Sequoiadendron giganteum
SGA_v2.0_scaffold169G38721 Striga asiatica
SMO116G0018 Selaginella moellendorffii
SMO146G0131 Selaginella moellendorffii
Solyc08g061130.3 Solanum lycopersicum
Sopen08g016230 Solanum pennellii
Sp2g22110 Schrenkiella parvula
Sp3g15740 Schrenkiella parvula
Sp4g04910 Schrenkiella parvula
Sp6g32300 Schrenkiella parvula
TAR365G0662 Trochodendron aralioides
TAR383G0122 Trochodendron aralioides
TAR625G0164 Trochodendron aralioides
TAR626G0278 Trochodendron aralioides
THA.LOC104803666 Tarenaya hassleriana
THA.LOC104815040 Tarenaya hassleriana
THA.LOC104821818 Tarenaya hassleriana
Thecc.09G150300 Theobroma cacao
Thhalv10000518m.g Eutrema salsugineum
Thhalv10004860m.g Eutrema salsugineum
Thhalv10014851m.g Eutrema salsugineum
Thhalv10021704m.g Eutrema salsugineum
TPR.G8486 Trifolium pratense
TPR.G9303 Trifolium pratense
TWI34G0582 Tripterygium wilfordii
TWI63G1394 Tripterygium wilfordii
unitig_37.g12938 Utricularia gibba
vmacro11154 Vaccinium macrocarpon
VMungo0540G1246 Vigna mungo
VMungo1383G0467 Vigna mungo
Zm00001eb122740 Zea mays
Zm00001eb235510 Zea mays
Zm00001eb336820 Zea mays
Zm00001eb385610 Zea mays
Zm00001eb424050 Zea mays

User provided reference genes

Program Settings