Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p11470 Brassica napus
A07p26340 Brassica napus
Aa31LG4G20 Aethionema arabicum
Aa31LG4G30 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.2361 Anthoceros agrestis
Actinidia21691 Actinidia chinensis
Actinidia32717 Actinidia chinensis
AL2G41740 Arabidopsis lyrata
AL5G17200 Arabidopsis lyrata
Aqoxy366s001 Aquilegia oxysepala
Aqoxy7G01536 Aquilegia oxysepala
Aqoxy7G01537 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0NGS5F Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.E6TYPI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X2Q1EE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X9C74S Arachis hypogaea
AT1G79810 Arabidopsis thaliana
AT3G27750 Arabidopsis thaliana
ATR0315G165 Amborella trichopoda
ATR0759G099 Amborella trichopoda
Atru.chr1.3416 Acer truncatum
Atru.chr1.3417 Acer truncatum
AUR62011685 Chenopodium quinoa
AUR62011686 Chenopodium quinoa
AUR62016511 Chenopodium quinoa
AUR62016512 Chenopodium quinoa
BcaB06g27228 Brassica carinata
BcaC02g09652 Brassica carinata
BolC4t26097H Brassica oleracea
BolC6t38042H Brassica oleracea
BraA04t16812Z Brassica rapa
BraA07t30278Z Brassica rapa
C04p45170 Brassica napus
C06p28730 Brassica napus
CAN.G1152.12 Capsicum annuum
CAN.G438.36 Capsicum annuum
CAN.G438.37 Capsicum annuum
CANSAT56G0911 Cannabis sativa
CANSAT56G3591 Cannabis sativa
CARHR063820 Cardamine hirsuta
CARHR074760 Cardamine hirsuta
Carub.0002s2769 Capsella rubella
Carub.0002s2770 Capsella rubella
Ca_11526_v3 Cicer arietinum L.
Ca_25052_v3 Cicer arietinum L.
CBR_g960 Chara braunii
Cc04_g02900 Coffea canephora
Cc06_g20260 Coffea canephora
CDE05G0315 Ceratophyllum demersum
CDE05G0493 Ceratophyllum demersum
Cfa002106 Carpinus fangiana
Cfa020089 Carpinus fangiana
Ciclev10026026m.g Citrus clementina
Ciclev10026419m.g Citrus clementina
CiPaw.01G234500 Carya illinoinensis
CiPaw.01G234600 Carya illinoinensis
CiPaw.02G148100 Carya illinoinensis
ClCG07G013190 Citrullus lanatus
ClCG09G001870 Citrullus lanatus
COL.COLO4_30459 Corchorus olitorius
COL.COLO4_30460 Corchorus olitorius
Cpa.g.sc109.47 Carica papaya
Cpa.g.sc109.48 Carica papaya
Cre17.g698800 Chlamydomonas reinhardtii
CsaV3_3G023830 Cucumis sativus L.
CsaV3_7G033470 Cucumis sativus L.
CSS0003033 Camellia sinensis var. sinensis
CSS0023180 Camellia sinensis var. sinensis
DCAR_026336 Daucus carota
Dinv30470 Davidia involucrata
Dinv38008 Davidia involucrata
Duzib192G0150 Durio zibethinus
Duzib192G0943 Durio zibethinus
Duzib235G0543 Durio zibethinus
Duzib235G0884 Durio zibethinus
ECA234G0421 Erigeron canadensis
EL10Ac5g10639 Beta vulgaris
EL10Ac9g22051 Beta vulgaris
Eucgr.J02952 Eucalyptus grandis
Eucgr.J02953 Eucalyptus grandis
FAN02G4032 Fragaria x ananassa
FAN02G4501 Fragaria x ananassa
FAN05G5042 Fragaria x ananassa
FAN09G2740 Fragaria x ananassa
FAN09G2948 Fragaria x ananassa
FAN14G2394 Fragaria x ananassa
FAN14G2558 Fragaria x ananassa
FvH4_6g31910 Fragaria vesca
FvH4_6g31920 Fragaria vesca
Glyma.07G018300 Glycine max
Glyma.07G018400 Glycine max
Glyma.08G203300 Glycine max
Glyma.08G203400 Glycine max
Gohir.A06G188700 Gossypium hirsutum
Gohir.A10G067500 Gossypium hirsutum
Gohir.A10G083732 Gossypium hirsutum
Gohir.D06G197300 Gossypium hirsutum
Gohir.D10G068700 Gossypium hirsutum
Gohir.D10G069366 Gossypium hirsutum
Gorai.010G229600 Gossypium raimondii
Gorai.011G073200 Gossypium raimondii
Gorai.011G073300 Gossypium raimondii
GSVIVG01017048001 Vitis vinifera
GSVIVG01017049001 Vitis vinifera
HanXRQChr04g0096211 Helianthus annuus
HanXRQChr04g0096241 Helianthus annuus
HanXRQChr12g0360831 Helianthus annuus
Haze_16343 Corylus avellana
Haze_20099 Corylus avellana
Hma1.2p1_0036F.1_g023360 Hydrangea macrophylla
Hma1.2p1_0280F.1_g112770 Hydrangea macrophylla
HPP92_002914 Vanilla planifolia
Hund00658 Selenicereus undatus
Hund06642 Selenicereus undatus
Lalb_Chr01g0013051 Lupinus albus
Lalb_Chr01g0013071 Lupinus albus
Lalb_Chr25g0280041 Lupinus albus
Lalb_Chr25g0280051 Lupinus albus
Lj3g0013088 Lotus japonicus
Lj3g0019237 Lotus japonicus
Lj5C318G10 Lonicera japonica
Lj5C56G8 Lonicera japonica
Lj9C509T18 Lonicera japonica
Lj9C509T19 Lonicera japonica
Lsat_1_v5_gn_1_35361 Lactuca sativa
Lsat_1_v5_gn_1_35381 Lactuca sativa
Lsat_1_v5_gn_1_85060 Lactuca sativa
Lsat_1_v5_gn_5_131021 Lactuca sativa
Manes.04G131100 Manihot esculenta
Manes.04G131200 Manihot esculenta
Manes.11G036900 Manihot esculenta
Mapoly0052s0120 Marchantia polymorpha
MBI04_g14938_MAGBIO Magnolia biondii
MBI14_g25895_MAGBIO Magnolia biondii
MBI14_g37138_MAGBIO Magnolia biondii
MCO16G131 Micromonas commoda
MD09G1208200 Malus domestica
MD17G1189400 Malus domestica
MD17G1189500 Malus domestica
Medtr7g090350 Medicago truncatula
Medtr8g013660 Medicago truncatula
Medtr8g013670 Medicago truncatula
MELO3C012977.2 Cucumis melo
MELO3C024259.2 Cucumis melo
Migut.D01010 Erythranthe guttata
Migut.D01011 Erythranthe guttata
MSTRG.4742 Avicennia marina
MSTRG.4743 Avicennia marina
Nitab4.5_0000351g0020 Nicotiana tabacum
Nitab4.5_0001315g0040 Nicotiana tabacum
Nitab4.5_0009963g0020 Nicotiana tabacum
Nitab4.5_0012010g0010 Nicotiana tabacum
Nitab4.5_0016721g0010 Nicotiana tabacum
Nn2g11662 Nelumbo nucifera
Nn3g18125 Nelumbo nucifera
Nn3g18126 Nelumbo nucifera
Oeu000462.1 Olea europaea
Oeu023760.1 Olea europaea
Os01g0158100 Oryza sativa ssp. japonica
Os05g0275700 Oryza sativa ssp. japonica
Peaxi162Scf00015g00014 Petunia axillaris
Peaxi162Scf00015g00145 Petunia axillaris
PGR102G0394 Punica granatum
PGR102G2077 Punica granatum
PGSC0003DMG400002549 Solanum tuberosum
PGSC0003DMG400002631 Solanum tuberosum
PGSC0003DMG400016501 Solanum tuberosum
Phvul.010G147300 Phaseolus vulgaris
Phvul.010G147500 Phaseolus vulgaris
Potri.001G186000 Populus trichocarpa
Potri.003G051400 Populus trichocarpa
Potri.003G051500 Populus trichocarpa
Pp3c3_18540 Physcomitrium patens
Prupe.3G064300 Prunus persica
Prupe.3G064400 Prunus persica
Psat4g199360 Pisum sativum
Psat4g199400 Pisum sativum
PSO210G1505 Papaver somniferum
PSO210G2107 Papaver somniferum
PSO566G0119 Papaver somniferum
PSO782G2745 Papaver somniferum
QL01p044480 Quercus lobata
QL05p021357 Quercus lobata
QL05p021375 Quercus lobata
RcHm_v2.0_Chr2g0139271 Rosa chinensis
RcHm_v2.0_Chr2g0139281 Rosa chinensis
Rhsim02G0192800 Rhododendron simsii
Rhsim03G0241200 Rhododendron simsii
Rhsim08G0224800 Rhododendron simsii
Rhsim12G0105800 Rhododendron simsii
Rhsim12G0201300 Rhododendron simsii
Sabra01G0154100 Salix brachista
Sabra03G0027500 Salix brachista
Sabra03G0027600 Salix brachista
SalBow7G1474 Salvia bowleyana
SalBow7G3178 Salvia bowleyana
Sc12g0009520 Simmondsia chinensis
Sc15g0002180 Simmondsia chinensis
Sed0010660 Sechium edule
Sed0011260 Sechium edule
Sed0019299 Sechium edule
SEGI_00949 Sequoiadendron giganteum
SEGI_14821 Sequoiadendron giganteum
SGA_v2.0_scaffold4G02012 Striga asiatica
SGA_v2.0_scaffold68G22970 Striga asiatica
SMO146G0339 Selaginella moellendorffii
Solyc03g120510.1 Solanum lycopersicum
Solyc03g120520.2 Solanum lycopersicum
Solyc06g066570.4 Solanum lycopersicum
Solyc10g074610.3 Solanum lycopersicum
Solyc12g027700.1 Solanum lycopersicum
Sopen00g008760 Solanum pennellii
Sopen00g013380 Solanum pennellii
Sopen03g039390 Solanum pennellii
Sopen06g024840 Solanum pennellii
Sp5g35950 Schrenkiella parvula
Sp5g35960 Schrenkiella parvula
TAR624G0208 Trochodendron aralioides
TAR624G0662 Trochodendron aralioides
TAR626G0970 Trochodendron aralioides
TAR636G3411 Trochodendron aralioides
THA.LOC104813552 Tarenaya hassleriana
THA.LOC104813553 Tarenaya hassleriana
Thecc.06G094700 Theobroma cacao
Thecc.06G094800 Theobroma cacao
Thhalv10018845m.g Eutrema salsugineum
Thhalv10019037m.g Eutrema salsugineum
TPR.G14812 Trifolium pratense
TPR.G14821 Trifolium pratense
TWI12G0304 Tripterygium wilfordii
TWI18G0563 Tripterygium wilfordii
unitig_736.g22790 Utricularia gibba
vmacro16974 Vaccinium macrocarpon
vmacro18877 Vaccinium macrocarpon
VMungo0331G0294 Vigna mungo
VMungo0331G1893 Vigna mungo
Zm00001eb031430 Zea mays
Zm00001eb336080 Zea mays

User provided reference genes

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