Gene: Sopen06g024840

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen06g024840
  • Transcript Identifier Sopen06g024840.1
  • Gene Type Coding gene
  • Location Spenn-ch06 : 52312099-52318387 : positive

Gene Family Information

  • ID HOM05D002908
  • #Genes/#Species 238/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen06g024840.1

Descriptions

  • Description Dominant suppressor of det1 phenotypes. Encodes a peroxisomal protein essential for Arabidopsis growth. Inserted directly from the cytosol into peroxisomes. | REVERSAL OF THE DET PHENOTYPE 3 (TED3) | FUNCTIONS IN: zinc ion binding | INVOLVED IN: protein import into peroxisome matrix, fatty acid beta-oxidation, peroxisome organization, photomorphogenesis | LOCATED IN: cytosol, peroxisome | EXPRESSED IN: 26 plant structures | EXPRESSED DURING: 16 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site , Pex, N-terminal , Zinc finger, RING-type , Zinc finger, C3HC4 RING-type
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016558
ISO
PLAZA Integrative Orthologyprotein import into peroxisome matrix AT1G79810
GO:0006635
ISO
PLAZA Integrative Orthologyfatty acid beta-oxidation AT1G79810
GO:0009640
ISO
PLAZA Integrative Orthologyphotomorphogenesis AT1G79810
GO:0007031
ISO
PLAZA Integrative Orthologyperoxisome organization AT1G79810
GO:0006513
ISO
PLAZA Integrative Orthologyprotein monoubiquitination AT1G79810

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046872
IEA
InterPrometal ion binding
GO:0004842
ISO
PLAZA Integrative Orthologyubiquitin-protein transferase activity AT1G79810
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G79810

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005777
ISO
PLAZA Integrative Orthologyperoxisome AT1G79810
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT1G79810
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G79810
GO:0005783
ISO
PLAZA Integrative Orthologyendoplasmic reticulum AT1G79810

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR018957 Zinc finger, C3HC4 RING-type
IPR001841 Zinc finger, RING-type
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR006845 Pex, N-terminal
Mapman id Description
23.4.1.4.1 Protein translocation.peroxisome.importomer translocation system.receptor polyubiquitination system.component Pex2