Gene: AT3G27750

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G27750
  • Transcript Identifier AT3G27750.1
  • Gene Type Coding gene
  • Location Chr3 : 10284820-10285488 : positive

Gene Family Information

  • ID HOM05D002908
  • #Genes/#Species 238/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G27750.1
  • symbol EMB3123
  • Alias THA8,Thylakoid Assembly 8
  • full_name EMBRYO DEFECTIVE 3123
  • uniprot Q9LVW6

Descriptions

  • Description PPR containing protein
  • Computational description FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Vacuolar sorting protein 9 (VPS9) domain (TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0009658
IEA
GOA Databasechloroplast organization
GO:0009658
IMP
Gene Ontologychloroplast organization1
GO:0009658
IEA
InterProchloroplast organization
GO:0000373
IEA
GOA DatabaseGroup II intron splicing
GO:0000373
IMP
Gene OntologyGroup II intron splicing1
GO:0000373
IEA
InterProGroup II intron splicing
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0009793
IMP
Gene Ontologyembryo development ending in seed dormancy2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IDA
Gene OntologyRNA binding1
GO:0003723
IEA
InterProRNA binding
GO:0003727
ISS
Gene Ontologysingle-stranded RNA binding
GO:1990825
IDA
Gene Ontologysequence-specific mRNA binding3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009579
IEA
GOA Databasethylakoid
GO:0016020
IEA
GOA Databasemembrane
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
IDA, HDA
ISM
Gene Ontologychloroplast1 4
GO:0009536
IEA
GOA Databaseplastid
GO:0009535
IEA
GOA Databasechloroplast thylakoid membrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR044190 Protein THYLAKOID ASSEMBLY 8-like
IPR011990 Tetratricopeptide-like helical domain superfamily
Mapman id Description
35.1 not assigned.annotated