Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p06940 Brassica napus
A03p11540 Brassica napus
A06p04940 Brassica napus
A08p35440 Brassica napus
A10p16940 Brassica napus
Aa31sc23G240 Aethionema arabicum
Aa31sc23G250 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.3656 Anthoceros agrestis
Actinidia03771 Actinidia chinensis
Actinidia03772 Actinidia chinensis
Actinidia07080 Actinidia chinensis
Actinidia13167 Actinidia chinensis
Actinidia37262 Actinidia chinensis
Ah.07g205970 Amaranthus hybridus
Ah.13g069940 Amaranthus hybridus
Ah.13g069950 Amaranthus hybridus
AL1G17910 Arabidopsis lyrata
AL8G36230 Arabidopsis lyrata
Aqoxy3G00101 Aquilegia oxysepala
Aqoxy7G00419 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.046NE0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6E1CPJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.886X77 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B07III Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JBU5AC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K398AB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M1W65U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PG48DD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U9CPFL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z9KP0D Arachis hypogaea
AT1G07705 Arabidopsis thaliana
AT5G59710 Arabidopsis thaliana
ATR0124G018 Amborella trichopoda
ATR0582G060 Amborella trichopoda
Atru.chr3.3794 Acer truncatum
AUR62003514 Chenopodium quinoa
AUR62006142 Chenopodium quinoa
AUR62017826 Chenopodium quinoa
AUR62019346 Chenopodium quinoa
AUR62019347 Chenopodium quinoa
BcaB02g06718 Brassica carinata
BcaB03g13366 Brassica carinata
BcaB03g13369 Brassica carinata
BcaB05g22533 Brassica carinata
BcaB05g22541 Brassica carinata
BcaB05g22569 Brassica carinata
BcaC01g06500 Brassica carinata
BcaC03g13991 Brassica carinata
BcaC04g19619 Brassica carinata
BolC2t07327H Brassica oleracea
BolC3t13797H Brassica oleracea
BolC5t29351H Brassica oleracea
BolC8t47137H Brassica oleracea
BolC9t58085H Brassica oleracea
BraA02t05774Z Brassica rapa
BraA03t10467Z Brassica rapa
BraA06t23699Z Brassica rapa
BraA08t35450Z Brassica rapa
BraA10t43776Z Brassica rapa
C02p12240 Brassica napus
C03p13350 Brassica napus
C05p05850 Brassica napus
C08p03390 Brassica napus
CAN.G394.10 Capsicum annuum
CAN.G755.18 Capsicum annuum
CANSAT54G1787 Cannabis sativa
CARHR007480 Cardamine hirsuta
CARHR273280 Cardamine hirsuta
Carub.0001s0706 Capsella rubella
Carub.0008s2035 Capsella rubella
Ca_01358_v3 Cicer arietinum L.
Ca_19213_v3 Cicer arietinum L.
CBR_g32389 Chara braunii
Cc01_g12100 Coffea canephora
Cc08_g14100 Coffea canephora
CDE02G0524 Ceratophyllum demersum
CDE02G4592 Ceratophyllum demersum
CDE04G2661 Ceratophyllum demersum
CDE05G0505 Ceratophyllum demersum
Cfa011426 Carpinus fangiana
Cfa024756 Carpinus fangiana
Ciclev10027964m.g Citrus clementina
CiPaw.13G101900 Carya illinoinensis
CiPaw.14G074200 Carya illinoinensis
ClCG00G005110 Citrullus lanatus
ClCG02G012520 Citrullus lanatus
ClCG02G020610 Citrullus lanatus
COL.COLO4_18423 Corchorus olitorius
Cpa.g.sc252.5 Carica papaya
Cre06.g309050 Chlamydomonas reinhardtii
CsaV3_2G016650 Cucumis sativus L.
CsaV3_6G022060 Cucumis sativus L.
CSS0000678 Camellia sinensis var. sinensis
CSS0004678 Camellia sinensis var. sinensis
CSS0033449 Camellia sinensis var. sinensis
DCAR_005297 Daucus carota
DCAR_006755 Daucus carota
Dinv26286 Davidia involucrata
Dinv32863 Davidia involucrata
Duzib150G0177 Durio zibethinus
Duzib168G1772 Durio zibethinus
Duzib170G0309 Durio zibethinus
ECA236G0810 Erigeron canadensis
ECA247G4039 Erigeron canadensis
EL10Ac3g05338 Beta vulgaris
Eucgr.J02100 Eucalyptus grandis
FAN11G3854 Fragaria x ananassa
FAN16G3650 Fragaria x ananassa
FAN21G0358 Fragaria x ananassa
FAN25G3681 Fragaria x ananassa
FvH4_3g34620 Fragaria vesca
Glyma.11G145854 Glycine max
Glyma.12G074700 Glycine max
Glyma.13G331400 Glycine max
Glyma.15G042700 Glycine max
Gohir.A05G098900 Gossypium hirsutum
Gohir.A08G000137 Gossypium hirsutum
Gohir.A13G229400 Gossypium hirsutum
Gohir.D05G098901 Gossypium hirsutum
Gohir.D08G010100 Gossypium hirsutum
Gohir.D13G235000 Gossypium hirsutum
Gorai.004G003300 Gossypium raimondii
Gorai.009G102700 Gossypium raimondii
Gorai.013G265700 Gossypium raimondii
GSVIVG01019820001 Vitis vinifera
GSVIVG01025059001 Vitis vinifera
GSVIVG01029659001 Vitis vinifera
HanXRQChr03g0088061 Helianthus annuus
HanXRQChr05g0134091 Helianthus annuus
HanXRQChr05g0134101 Helianthus annuus
HanXRQChr05g0134111 Helianthus annuus
HanXRQChr08g0228211 Helianthus annuus
HanXRQChr13g0416851 Helianthus annuus
Haze_24004 Corylus avellana
Hma1.2p1_0035F.1_g021830 Hydrangea macrophylla
Hma1.2p1_0746F.1_g212350 Hydrangea macrophylla
Hma1.2p1_0746F.1_g212355 Hydrangea macrophylla
Hma1.2p1_2771F.1_g328220 Hydrangea macrophylla
HPP92_015607 Vanilla planifolia
HPP92_015608 Vanilla planifolia
HPP92_017900 Vanilla planifolia
HPP92_017902 Vanilla planifolia
Hund11683 Selenicereus undatus
Hund27971 Selenicereus undatus
Hund27972 Selenicereus undatus
Hund29757 Selenicereus undatus
Hund29758 Selenicereus undatus
Lalb_Chr14g0374941 Lupinus albus
Lalb_Chr24g0394301 Lupinus albus
Lj2C1048T3 Lonicera japonica
Lj2C1048T4 Lonicera japonica
Lj3g0000216 Lotus japonicus
Lj3g0019780 Lotus japonicus
Lj8A237G26 Lonicera japonica
Lsat_1_v5_gn_6_87500 Lactuca sativa
Lsat_1_v5_gn_9_21580 Lactuca sativa
Manes.04G029100 Manihot esculenta
Manes.11G136600 Manihot esculenta
Mapoly0001s0449 Marchantia polymorpha
MBI10_g36212_MAGBIO Magnolia biondii
MCO09G125 Micromonas commoda
MD03G1103300 Malus domestica
MD11G1117100 Malus domestica
Medtr2g096180 Medicago truncatula
Medtr4g061843 Medicago truncatula
Medtr4g061960 Medicago truncatula
MELO3C013666.2 Cucumis melo
MELO3C020874.2 Cucumis melo
Migut.A00927 Erythranthe guttata
Migut.D02149 Erythranthe guttata
MSTRG.18609 Avicennia marina
Nitab4.5_0000182g0090 Nicotiana tabacum
Nitab4.5_0000270g0280 Nicotiana tabacum
Nitab4.5_0002684g0140 Nicotiana tabacum
Nitab4.5_0007030g0020 Nicotiana tabacum
Nn1g01380 Nelumbo nucifera
Nn2g10543 Nelumbo nucifera
Nn2g12836 Nelumbo nucifera
Nn4g25385 Nelumbo nucifera
Nn6g34224 Nelumbo nucifera
Oeu012680.1 Olea europaea
Oeu017385.1 Olea europaea
Oeu048785.2 Olea europaea
Oeu059066.2 Olea europaea
Os02g0782200 Oryza sativa ssp. japonica
Os03g0736000 Oryza sativa ssp. japonica
Os05g0486300 Oryza sativa ssp. japonica
Peaxi162Scf00411g00719 Petunia axillaris
Peaxi162Scf00986g00114 Petunia axillaris
PGR102G1233 Punica granatum
PGR119G1579 Punica granatum
PGSC0003DMG400030306 Solanum tuberosum
PGSC0003DMG402015527 Solanum tuberosum
Phvul.005G106000 Phaseolus vulgaris
Phvul.011G069400 Phaseolus vulgaris
Phvul.L003389 Phaseolus vulgaris
Potri.001G349400 Populus trichocarpa
Potri.017G065900 Populus trichocarpa
Pp3c10_21550 Physcomitrium patens
Pp3c20_22090 Physcomitrium patens
Pp3c23_22450 Physcomitrium patens
PRCOL_00000555 Prasinoderma coloniale
Prupe.6G087300 Prunus persica
Psat1g033440 Pisum sativum
Psat4g011880 Pisum sativum
Psat4g011920 Pisum sativum
Psat4g128000 Pisum sativum
Psat5g282320 Pisum sativum
Psat7g220840 Pisum sativum
Psat7g220880 Pisum sativum
PSO339G0540 Papaver somniferum
PSO384G1352 Papaver somniferum
PSO478G4135 Papaver somniferum
PSO782G4018 Papaver somniferum
QL01p034369 Quercus lobata
RcHm_v2.0_Chr5g0062331 Rosa chinensis
Rhsim02G0013500 Rhododendron simsii
Rhsim02G0099900 Rhododendron simsii
Rhsim13G0088600 Rhododendron simsii
Sabra16G0228800 Salix brachista
Sabra17G0062900 Salix brachista
SalBow3G3367 Salvia bowleyana
SalBow6G4755 Salvia bowleyana
Sc01g0009890 Simmondsia chinensis
Sed0007799 Sechium edule
Sed0008508 Sechium edule
SEGI_06453 Sequoiadendron giganteum
SEGI_19635 Sequoiadendron giganteum
SEGI_33920 Sequoiadendron giganteum
SGA_v2.0_scaffold286G47086 Striga asiatica
SGA_v2.0_scaffold343G49465 Striga asiatica
SGA_v2.0_scaffold61G21236 Striga asiatica
SMO192G0001 Selaginella moellendorffii
SMO236G0029 Selaginella moellendorffii
Solyc06g075590.4 Solanum lycopersicum
Solyc11g072940.2 Solanum lycopersicum
Sopen06g031990 Solanum pennellii
Sopen11g030600 Solanum pennellii
Sp1g06500 Schrenkiella parvula
Sp6g21380 Schrenkiella parvula
TAR369G0172 Trochodendron aralioides
TAR374G0758 Trochodendron aralioides
TAR375G0436 Trochodendron aralioides
TAR629G2017 Trochodendron aralioides
THA.LOC104800634 Tarenaya hassleriana
THA.LOC104810794 Tarenaya hassleriana
THA.LOC104826337 Tarenaya hassleriana
Thecc.09G330500 Theobroma cacao
Thhalv10007092m.g Eutrema salsugineum
Thhalv10012986m.g Eutrema salsugineum
TPR.G11503 Trifolium pratense
TPR.G2973 Trifolium pratense
TWI75G1204 Tripterygium wilfordii
unitig_60.g25622 Utricularia gibba
unitig_699.g19809 Utricularia gibba
unitig_699.g19810 Utricularia gibba
vmacro15765 Vaccinium macrocarpon
VMungo1080G1722 Vigna mungo
VMungo1127G1223 Vigna mungo
Zm00001eb193030 Zea mays
Zm00001eb291100 Zea mays

User provided reference genes

Program Settings