Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p06820 Brassica napus
A08p34150 Brassica napus
A09p65160 Brassica napus
A10p30700 Brassica napus
Aa31LG11G6680 Aethionema arabicum
Aa31LG9G16040 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.1691 Anthoceros agrestis
Actinidia12191 Actinidia chinensis
Actinidia18726 Actinidia chinensis
Actinidia29702 Actinidia chinensis
Actinidia33924 Actinidia chinensis
Actinidia33925 Actinidia chinensis
Ah.07g206610 Amaranthus hybridus
Ah.10g031020 Amaranthus hybridus
Ah.13g069130 Amaranthus hybridus
Ah.16g103570 Amaranthus hybridus
AL1G20860 Arabidopsis lyrata
AL1G49270 Arabidopsis lyrata
AL6G15550 Arabidopsis lyrata
Aqoxy1G02870 Aquilegia oxysepala
Aqoxy3G02495 Aquilegia oxysepala
Aqoxy4G02552 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1Q70G5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DA4QY1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TQ1MU5 Arachis hypogaea
AT1G10170 Arabidopsis thaliana
AT5G05660 Arabidopsis thaliana
ATR0681G002 Amborella trichopoda
ATR0681G044 Amborella trichopoda
ATR0753G085 Amborella trichopoda
Atru.chr12.35 Acer truncatum
Atru.chr9.1637 Acer truncatum
AUR62012252 Chenopodium quinoa
AUR62021129 Chenopodium quinoa
AUR62021131 Chenopodium quinoa
AUR62022885 Chenopodium quinoa
AUR62031415 Chenopodium quinoa
BcaB08g37336 Brassica carinata
BcaC05g24802 Brassica carinata
BcaC05g24806 Brassica carinata
BcaC06g32271 Brassica carinata
BcaC07g38555 Brassica carinata
BcaC07g41825 Brassica carinata
BolC5t29581H Brassica oleracea
BolC8t48974H Brassica oleracea
BolC8t52442H Brassica oleracea
BolC9t59881H Brassica oleracea
BraA06t23896Z Brassica rapa
BraA08t35327Z Brassica rapa
BraA09t41859Z Brassica rapa
BraA10t45111Z Brassica rapa
C05p08310 Brassica napus
C08p13440 Brassica napus
C08p49100 Brassica napus
C09p71190 Brassica napus
CAN.G135.19 Capsicum annuum
CAN.G149.6 Capsicum annuum
CAN.G19.8 Capsicum annuum
CAN.G190.4 Capsicum annuum
CAN.G758.9 Capsicum annuum
CAN.G843.28 Capsicum annuum
CARHR010270 Cardamine hirsuta
CARHR030690 Cardamine hirsuta
CARHR207620 Cardamine hirsuta
Carub.0001s0958 Capsella rubella
Carub.0001s2961 Capsella rubella
Carub.0006s0455 Capsella rubella
Ca_15127_v3 Cicer arietinum L.
Ca_17175_v3 Cicer arietinum L.
Ca_25356_v3 Cicer arietinum L.
CBR_g19005 Chara braunii
CBR_g23063 Chara braunii
CBR_g24300 Chara braunii
CBR_g3071 Chara braunii
Cc00_g07980 Coffea canephora
Cc02_g06500 Coffea canephora
CDE02G0569 Ceratophyllum demersum
CDE04G1574 Ceratophyllum demersum
CDE11G0366 Ceratophyllum demersum
CDE11G0988 Ceratophyllum demersum
Cfa001317 Carpinus fangiana
Cfa020632 Carpinus fangiana
Cfa026744 Carpinus fangiana
Ciclev10018607m.g Citrus clementina
Ciclev10030684m.g Citrus clementina
CiPaw.01G298700 Carya illinoinensis
CiPaw.15G146400 Carya illinoinensis
ClCG04G010460 Citrullus lanatus
ClCG11G006140 Citrullus lanatus
COL.COLO4_25727 Corchorus olitorius
COL.COLO4_38532 Corchorus olitorius
Cpa.g.sc19.173 Carica papaya
Cpa.g.sc3.363 Carica papaya
Cre03.g163200 Chlamydomonas reinhardtii
CsaV3_1G007320 Cucumis sativus L.
CsaV3_6G001850 Cucumis sativus L.
CSS0037879 Camellia sinensis var. sinensis
CSS0040654 Camellia sinensis var. sinensis
CSS0046441 Camellia sinensis var. sinensis
CSS0048466 Camellia sinensis var. sinensis
DCAR_003534 Daucus carota
DCAR_024827 Daucus carota
Dinv02695 Davidia involucrata
Dinv17995 Davidia involucrata
Duzib128G0837 Durio zibethinus
Duzib205G1961 Durio zibethinus
ECA233G4261 Erigeron canadensis
ECA238G2639 Erigeron canadensis
EL10Ac2g04832 Beta vulgaris
EL10Ac3g05872 Beta vulgaris
Eucgr.H00552 Eucalyptus grandis
Eucgr.J00206 Eucalyptus grandis
Eucgr.K02284 Eucalyptus grandis
FAN01G0126 Fragaria x ananassa
FAN04G2427 Fragaria x ananassa
FAN08G0580 Fragaria x ananassa
FAN10G0420 Fragaria x ananassa
FAN13G2332 Fragaria x ananassa
FvH4_5g17660 Fragaria vesca
FvH4_7g24480 Fragaria vesca
Glyma.05G247466 Glycine max
Glyma.07G104700 Glycine max
Glyma.08G055900 Glycine max
Glyma.09G173000 Glycine max
Glyma.11G230200 Glycine max
Glyma.18G027000 Glycine max
Gohir.A06G163400 Gossypium hirsutum
Gohir.A09G049800 Gossypium hirsutum
Gohir.D06G169000 Gossypium hirsutum
Gohir.D09G051100 Gossypium hirsutum
Gorai.006G058600 Gossypium raimondii
Gorai.010G197800 Gossypium raimondii
GSVIVG01008482001 Vitis vinifera
GSVIVG01032817001 Vitis vinifera
HanXRQChr01g0030461 Helianthus annuus
HanXRQChr01g0030921 Helianthus annuus
HanXRQChr01g0030941 Helianthus annuus
HanXRQChr04g0108751 Helianthus annuus
HanXRQChr07g0202861 Helianthus annuus
HanXRQChr08g0227431 Helianthus annuus
Haze_17227 Corylus avellana
Haze_18906 Corylus avellana
Hma1.2p1_0471F.1_g159480 Hydrangea macrophylla
HPP92_013879 Vanilla planifolia
HPP92_013887 Vanilla planifolia
HPP92_020386 Vanilla planifolia
Hund11722 Selenicereus undatus
Hund13865 Selenicereus undatus
Lalb_Chr09g0330291 Lupinus albus
Lalb_Chr23g0276911 Lupinus albus
Lj1A955G80 Lonicera japonica
Lj2g0016045 Lotus japonicus
Lj4g0001149 Lotus japonicus
Lj5P161T22 Lonicera japonica
Lj6g0019077 Lotus japonicus
Lsat_1_v5_gn_2_123440 Lactuca sativa
Lsat_1_v5_gn_8_145600 Lactuca sativa
Manes.06G003200 Manihot esculenta
Manes.10G012200 Manihot esculenta
Mapoly0036s0109 Marchantia polymorpha
Mapoly0154s0047 Marchantia polymorpha
MBI03_g37290_MAGBIO Magnolia biondii
MBI19_g37992_MAGBIO Magnolia biondii
MD00G1166700 Malus domestica
MD06G1232100 Malus domestica
MD07G1222000 Malus domestica
MD14G1238900 Malus domestica
Medtr3g070780 Medicago truncatula
Medtr4g027040 Medicago truncatula
Medtr6g071140 Medicago truncatula
MELO3C002148.2 Cucumis melo
MELO3C008297.2 Cucumis melo
Migut.D01221 Erythranthe guttata
Migut.F00683 Erythranthe guttata
MSTRG.27331 Avicennia marina
Nitab4.5_0000666g0080 Nicotiana tabacum
Nitab4.5_0001032g0040 Nicotiana tabacum
Nitab4.5_0002450g0070 Nicotiana tabacum
Nn2g10843 Nelumbo nucifera
Nn3g16590 Nelumbo nucifera
Nn3g16592 Nelumbo nucifera
Nn3g20157 Nelumbo nucifera
Nn4g22472 Nelumbo nucifera
Nn4g22473 Nelumbo nucifera
Oeu028342.1 Olea europaea
Oeu035881.1 Olea europaea
Os01g0158900 Oryza sativa ssp. japonica
Os06g0252300 Oryza sativa ssp. japonica
Peaxi162Scf00314g00047 Petunia axillaris
Peaxi162Scf00825g00235 Petunia axillaris
PGR044G2457 Punica granatum
PGSC0003DMG400014182 Solanum tuberosum
PGSC0003DMG400019018 Solanum tuberosum
Phvul.001G243400 Phaseolus vulgaris
Phvul.002G331600 Phaseolus vulgaris
Potri.008G068500 Populus trichocarpa
Potri.010G188700 Populus trichocarpa
Potri.012G043700 Populus trichocarpa
Potri.015G034500 Populus trichocarpa
Pp3c25_1050 Physcomitrium patens
Pp3c25_1058 Physcomitrium patens
Pp3c2_24250 Physcomitrium patens
Prupe.2G250200 Prunus persica
Prupe.5G236400 Prunus persica
Psat1g030040 Pisum sativum
Psat5g128320 Pisum sativum
Psat7g000840 Pisum sativum
PSO017G5700 Papaver somniferum
PSO339G0934 Papaver somniferum
PSO384G3900 Papaver somniferum
PSO478G3706 Papaver somniferum
QL08p063209 Quercus lobata
QL10p031431 Quercus lobata
RcHm_v2.0_Chr1g0370241 Rosa chinensis
RcHm_v2.0_Chr7g0178011 Rosa chinensis
Rhsim03G0143800 Rhododendron simsii
Rhsim05G0011000 Rhododendron simsii
Rhsim08G0127300 Rhododendron simsii
Sabra08G0050300 Salix brachista
Sabra10G0145400 Salix brachista
Sabra12G0030600 Salix brachista
SalBow3G3712 Salvia bowleyana
SalBow6G5788 Salvia bowleyana
Sc09g0000650 Simmondsia chinensis
Sc10g0002360 Simmondsia chinensis
Sed0014947 Sechium edule
Sed0021537 Sechium edule
SEGI_07791 Sequoiadendron giganteum
SEGI_24341 Sequoiadendron giganteum
SEGI_29365 Sequoiadendron giganteum
SEGI_36190 Sequoiadendron giganteum
SGA_v2.0_scaffold40G15642 Striga asiatica
SGA_v2.0_scaffold60G20999 Striga asiatica
SHI07444 Sapria himalayana
SMO118G0512 Selaginella moellendorffii
SMO230G0013 Selaginella moellendorffii
Solyc03g118420.4 Solanum lycopersicum
Solyc06g051570.4 Solanum lycopersicum
Sopen03g037310 Solanum pennellii
Sopen06g017550 Solanum pennellii
Sp1g08800 Schrenkiella parvula
Sp6g37233 Schrenkiella parvula
TAR636G1503 Trochodendron aralioides
TAR636G2646 Trochodendron aralioides
THA.LOC104798618 Tarenaya hassleriana
THA.LOC104814365 Tarenaya hassleriana
THA.LOC104816547 Tarenaya hassleriana
Thecc.03G042800 Theobroma cacao
Thecc.04G023100 Theobroma cacao
Thecc.10G016000 Theobroma cacao
Thhalv10006632m.g Eutrema salsugineum
Thhalv10006708m.g Eutrema salsugineum
Thhalv10012642m.g Eutrema salsugineum
TPR.G11205 Trifolium pratense
TPR.G22312 Trifolium pratense
TWI73G1175 Tripterygium wilfordii
unitig_62.g23809 Utricularia gibba
vmacro06970 Vaccinium macrocarpon
VMungo0251G0922 Vigna mungo
VMungo1127G1512 Vigna mungo
VMungo1383G0855 Vigna mungo
Zm00001eb280780 Zea mays
Zm00001eb336160 Zea mays
Zm00001eb371520 Zea mays

User provided reference genes

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