Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p42060 Brassica napus
A05p38980 Brassica napus
A06p13370 Brassica napus
A09p60370 Brassica napus
Aa31LG3G2610 Aethionema arabicum
Aa31LG4G2990 Aethionema arabicum
Aa31LG7G13880 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.4550 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_369.142 Anthoceros agrestis
Actinidia05442 Actinidia chinensis
Actinidia26030 Actinidia chinensis
Actinidia37365 Actinidia chinensis
Actinidia39082 Actinidia chinensis
Ah.06g188950 Amaranthus hybridus
Ah.08g210740 Amaranthus hybridus
AL1G29720 Arabidopsis lyrata
AL3G21400 Arabidopsis lyrata
Aqoxy1G00838 Aquilegia oxysepala
Aqoxy2G01262 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.FR3P05 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PV9J4A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T5SCHP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U78AI9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UN6F3P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X6IDHH Arachis hypogaea
AT1G17440 Arabidopsis thaliana
AT3G10070 Arabidopsis thaliana
ATR0559G035 Amborella trichopoda
ATR0820G218 Amborella trichopoda
Atru.chr1.3950 Acer truncatum
Atru.chr8.1574 Acer truncatum
AUR62000647 Chenopodium quinoa
AUR62028563 Chenopodium quinoa
AUR62033516 Chenopodium quinoa
BcaC09g48117 Brassica carinata
BcaNung06974 Brassica carinata
BolC1t05422H Brassica oleracea
BolC5t30289H Brassica oleracea
BolC5t34457H Brassica oleracea
BolC8t51935H Brassica oleracea
BraA01t04275Z Brassica rapa
BraA05t22689Z Brassica rapa
BraA06t24489Z Brassica rapa
BraA09t41409Z Brassica rapa
C04p16470 Brassica napus
C05p15830 Brassica napus
C05p58010 Brassica napus
C08p43860 Brassica napus
CAN.G397.34 Capsicum annuum
CAN.G825.10 Capsicum annuum
CAN.G825.8 Capsicum annuum
CAN.G825.9 Capsicum annuum
CAN.G862.29 Capsicum annuum
CANSAT56G2749 Cannabis sativa
CANSAT80G2428 Cannabis sativa
CANSAT80G2666 Cannabis sativa
CARHR018030 Cardamine hirsuta
CARHR084570 Cardamine hirsuta
Carub.0001s1720 Capsella rubella
Carub.0003s0917 Capsella rubella
Ca_22051_v3 Cicer arietinum L.
Ca_23371_v3 Cicer arietinum L.
CBR_g27956 Chara braunii
CBR_g70734 Chara braunii
Cc06_g05580 Coffea canephora
Cc11_g03670 Coffea canephora
CDE02G1135 Ceratophyllum demersum
CDE04G3259 Ceratophyllum demersum
CDE09G0028 Ceratophyllum demersum
Cfa016584 Carpinus fangiana
Ciclev10011440m.g Citrus clementina
Ciclev10025234m.g Citrus clementina
CiPaw.01G219200 Carya illinoinensis
CiPaw.10G008100 Carya illinoinensis
ClCG04G009960 Citrullus lanatus
ClCG09G000950 Citrullus lanatus
COL.COLO4_30763 Corchorus olitorius
Cpa.g.sc25.112 Carica papaya
Cpa.g.sc25.113 Carica papaya
Cre12.g530700 Chlamydomonas reinhardtii
CsaV3_6G040610 Cucumis sativus L.
CsaV3_7G034500 Cucumis sativus L.
CSS0024290 Camellia sinensis var. sinensis
CSS0029074 Camellia sinensis var. sinensis
CSS0029798 Camellia sinensis var. sinensis
CSS0031655 Camellia sinensis var. sinensis
CSS0039181 Camellia sinensis var. sinensis
DCAR_016127 Daucus carota
Dinv20442 Davidia involucrata
Dinv30674 Davidia involucrata
Dinv31667 Davidia involucrata
Dinv34334 Davidia involucrata
Dinv37872 Davidia involucrata
Duzib093G0103 Durio zibethinus
Duzib128G0693 Durio zibethinus
Duzib192G0999 Durio zibethinus
Duzib235G0745 Durio zibethinus
ECA233G3368 Erigeron canadensis
ECA247G3107 Erigeron canadensis
EL10Ac4g09793 Beta vulgaris
EL10Ac5g11677 Beta vulgaris
Eucgr.F03174 Eucalyptus grandis
Eucgr.K02056 Eucalyptus grandis
FAN02G2657 Fragaria x ananassa
FAN05G0009 Fragaria x ananassa
FAN05G3504 Fragaria x ananassa
FAN05G3736 Fragaria x ananassa
FAN09G2440 Fragaria x ananassa
FAN09G3304 Fragaria x ananassa
FAN14G0943 Fragaria x ananassa
FAN14G2103 Fragaria x ananassa
FvH4_6g18380 Fragaria vesca
FvH4_6g34640 Fragaria vesca
Glyma.07G037600 Glycine max
Glyma.10G070700 Glycine max
Glyma.13G152882 Glycine max
Glyma.16G006966 Glycine max
Glyma.16G007032 Glycine max
Gohir.A01G138400 Gossypium hirsutum
Gohir.A06G193600 Gossypium hirsutum
Gohir.A10G053200 Gossypium hirsutum
Gohir.D01G128066 Gossypium hirsutum
Gohir.D01G128132 Gossypium hirsutum
Gohir.D06G201400 Gossypium hirsutum
Gohir.D10G055000 Gossypium hirsutum
Gorai.002G158700 Gossypium raimondii
Gorai.010G235100 Gossypium raimondii
Gorai.011G058700 Gossypium raimondii
GSVIVG01016770001 Vitis vinifera
GSVIVG01033805001 Vitis vinifera
HanXRQChr04g0094561 Helianthus annuus
HanXRQChr13g0401921 Helianthus annuus
Haze_16027 Corylus avellana
Haze_19584 Corylus avellana
Hma1.2p1_0291F.1_g115140 Hydrangea macrophylla
Hma1.2p1_0496F.1_g166220 Hydrangea macrophylla
HPP92_024388 Vanilla planifolia
HPP92_026973 Vanilla planifolia
Hund07159 Selenicereus undatus
Hund07160 Selenicereus undatus
Hund19953 Selenicereus undatus
Lalb_Chr01g0013581 Lupinus albus
Lalb_Chr04g0263441 Lupinus albus
Lalb_Chr08g0237861 Lupinus albus
Lj2A134T54 Lonicera japonica
Lj2A134T56 Lonicera japonica
Lj3g0023911 Lotus japonicus
Lj5A37T39 Lonicera japonica
Lj5C37T8 Lonicera japonica
Lj5g0026257 Lotus japonicus
Lj9A523T54 Lonicera japonica
Lj9A523T55 Lonicera japonica
Lj9P523T21 Lonicera japonica
Lsat_1_v5_gn_1_38060 Lactuca sativa
Lsat_1_v5_gn_2_105561 Lactuca sativa
Lsat_1_v5_gn_6_24321 Lactuca sativa
Lsat_1_v5_gn_8_136960 Lactuca sativa
Manes.04G144200 Manihot esculenta
Manes.09G056700 Manihot esculenta
Manes.11G020700 Manihot esculenta
Mapoly0047s0024 Marchantia polymorpha
MBI14_g32128_MAGBIO Magnolia biondii
MCO01G324 Micromonas commoda
MD09G1184100 Malus domestica
MD12G1023000 Malus domestica
MD14G1020000 Malus domestica
MD17G1168400 Malus domestica
Medtr1g060410 Medicago truncatula
Medtr8g020470 Medicago truncatula
Medtr8g020480 Medicago truncatula
MELO3C000238.2 Cucumis melo
MELO3C010016.2 Cucumis melo
MELO3C024357.2 Cucumis melo
MELO3C024537.2 Cucumis melo
Migut.I01070 Erythranthe guttata
Migut.J01057 Erythranthe guttata
MSTRG.14437 Avicennia marina
MSTRG.5828 Avicennia marina
Nitab4.5_0000794g0020 Nicotiana tabacum
Nitab4.5_0002072g0070 Nicotiana tabacum
Nitab4.5_0002400g0020 Nicotiana tabacum
Nitab4.5_0009182g0030 Nicotiana tabacum
Nitab4.5_0009241g0020 Nicotiana tabacum
Nitab4.5_0012529g0010 Nicotiana tabacum
Nn2g14104 Nelumbo nucifera
Oeu007562.1 Olea europaea
Oeu014905.2 Olea europaea
Oeu026825.1 Olea europaea
Os01g0846900 Oryza sativa ssp. japonica
Os01g0858500 Oryza sativa ssp. japonica
Peaxi162Scf00038g01936 Petunia axillaris
Peaxi162Scf00207g01425 Petunia axillaris
Peaxi162Scf01015g00113 Petunia axillaris
PGR119G0909 Punica granatum
PGR142G0490 Punica granatum
PGSC0003DMG400002568 Solanum tuberosum
PGSC0003DMG400008963 Solanum tuberosum
PGSC0003DMG402004858 Solanum tuberosum
Phvul.007G228800 Phaseolus vulgaris
Phvul.010G130700 Phaseolus vulgaris
Potri.001G169900 Populus trichocarpa
Potri.003G064100 Populus trichocarpa
Potri.006G083500 Populus trichocarpa
Pp3c19_6040 Physcomitrium patens
PRCOL_00004169 Prasinoderma coloniale
Prupe.3G042400 Prunus persica
Prupe.7G113600 Prunus persica
Psat4g182480 Pisum sativum
Psat6g081520 Pisum sativum
PSO339G1275 Papaver somniferum
PSO339G1709 Papaver somniferum
PSO384G1407 Papaver somniferum
PSO384G1420 Papaver somniferum
QL05p007807 Quercus lobata
QL07p039457 Quercus lobata
RcHm_v2.0_Chr2g0145171 Rosa chinensis
RcHm_v2.0_Chr3g0472861 Rosa chinensis
Rhsim03G0077100 Rhododendron simsii
Rhsim12G0209500 Rhododendron simsii
Rhsim12G0209700 Rhododendron simsii
Sabra01G0141500 Salix brachista
Sabra01G0141600 Salix brachista
Sabra03G0037700 Salix brachista
Sabra03G0037800 Salix brachista
Sabra03G0037900 Salix brachista
Sabra06G0063100 Salix brachista
SalBow3G2137 Salvia bowleyana
SalBow6G1630 Salvia bowleyana
SalBow6G2845 Salvia bowleyana
SalBow6G7152 Salvia bowleyana
SalBow6G7196 Salvia bowleyana
Sc12g0010550 Simmondsia chinensis
Sc20g0006210 Simmondsia chinensis
Sed0013523 Sechium edule
Sed0015077 Sechium edule
Sed0015742 Sechium edule
SEGI_25834 Sequoiadendron giganteum
SEGI_35401 Sequoiadendron giganteum
SGA_v2.0_scaffold13G06755 Striga asiatica
SGA_v2.0_scaffold71G23856 Striga asiatica
SHI32207 Sapria himalayana
SMO140G0017 Selaginella moellendorffii
Solyc03g122020.4 Solanum lycopersicum
Solyc06g062900.4 Solanum lycopersicum
Solyc09g009680.2 Solanum lycopersicum
Sopen03g040820 Solanum pennellii
Sopen06g022350 Solanum pennellii
Sopen09g004440 Solanum pennellii
Sp1g15580 Schrenkiella parvula
Sp3g08380 Schrenkiella parvula
TAR623G1132 Trochodendron aralioides
TAR633G2028 Trochodendron aralioides
TAR636G1942 Trochodendron aralioides
THA.LOC104808053 Tarenaya hassleriana
THA.LOC104813958 Tarenaya hassleriana
THA.LOC104816386 Tarenaya hassleriana
Thecc.05G086100 Theobroma cacao
Thecc.06G119300 Theobroma cacao
Thhalv10006997m.g Eutrema salsugineum
Thhalv10020482m.g Eutrema salsugineum
TPR.G32477 Trifolium pratense
TPR.G35430 Trifolium pratense
TWI53G1940 Tripterygium wilfordii
unitig_32.g11187 Utricularia gibba
unitig_578.g15755 Utricularia gibba
unitig_578.g15756 Utricularia gibba
vmacro07396 Vaccinium macrocarpon
vmacro22041 Vaccinium macrocarpon
VMungo0331G0210 Vigna mungo
VMungo0720G1109 Vigna mungo
Zm00001eb147320 Zea mays
Zm00001eb148060 Zea mays
Zm00001eb367790 Zea mays

User provided reference genes

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