Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p00150 Brassica napus
A02p40660 Brassica napus
A06p35160 Brassica napus
A10p27660 Brassica napus
Aa31LG11G3610 Aethionema arabicum
Aa31LG3G17320 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.4188 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.313 Anthoceros agrestis
Actinidia02449 Actinidia chinensis
Actinidia06649 Actinidia chinensis
Actinidia09830 Actinidia chinensis
Actinidia34239 Actinidia chinensis
Ah.01g009740 Amaranthus hybridus
Ah.02g121900 Amaranthus hybridus
Ah.03g146720 Amaranthus hybridus
Ah.07g205290 Amaranthus hybridus
Ah.13g070510 Amaranthus hybridus
AL6G20190 Arabidopsis lyrata
AL6G35850 Arabidopsis lyrata
Aqoxy6G00382 Aquilegia oxysepala
Aqoxy7G00046 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.29VWQI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.655WP4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LSW17J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TZQA37 Arachis hypogaea
AT5G09790 Arabidopsis thaliana
AT5G24330 Arabidopsis thaliana
ATR0757G102 Amborella trichopoda
Atru.chr12.2266 Acer truncatum
Atru.chr4.823 Acer truncatum
AUR62003607 Chenopodium quinoa
AUR62006060 Chenopodium quinoa
AUR62017918 Chenopodium quinoa
AUR62035566 Chenopodium quinoa
AUR62035568 Chenopodium quinoa
BcaB04g17751 Brassica carinata
BcaB05g21529 Brassica carinata
BcaB08g37166 Brassica carinata
BcaB08g37181 Brassica carinata
BcaB08g37183 Brassica carinata
BcaC03g13275 Brassica carinata
BcaC03g17983 Brassica carinata
BcaC03g17986 Brassica carinata
BcaNung01225 Brassica carinata
BcaNung01226 Brassica carinata
BolC2t06368H Brassica oleracea
BolC2t12094H Brassica oleracea
BolC7t44867H Brassica oleracea
BolC9t59534H Brassica oleracea
BolC9t59536H Brassica oleracea
BraA02t04999Z Brassica rapa
BraA02t09013Z Brassica rapa
BraA06t26436Z Brassica rapa
BraA10t44818Z Brassica rapa
C02p04060 Brassica napus
C02p60390 Brassica napus
C07p43400 Brassica napus
C09p67720 Brassica napus
CAN.G1100.3 Capsicum annuum
CAN.G1544.3 Capsicum annuum
CAN.G2122.4 Capsicum annuum
CAN.G371.50 Capsicum annuum
CAN.G481.41 Capsicum annuum
CAN.G51.5 Capsicum annuum
CAN.G853.47 Capsicum annuum
CAN.G981.32 Capsicum annuum
CANSAT21G0629 Cannabis sativa
CARHR189120 Cardamine hirsuta
CARHR203620 Cardamine hirsuta
Carub.0006s0820 Capsella rubella
Carub.0006s2215 Capsella rubella
Ca_12779_v3 Cicer arietinum L.
Ca_16928_v3 Cicer arietinum L.
CBR_g10858 Chara braunii
CBR_g54334 Chara braunii
Cc02_g01230 Coffea canephora
Cc07_g17980 Coffea canephora
CDE02G4793 Ceratophyllum demersum
CDE04G2616 Ceratophyllum demersum
CDE04G3247 Ceratophyllum demersum
CDE12G0363 Ceratophyllum demersum
Cfa016205 Carpinus fangiana
Ciclev10020975m.g Citrus clementina
Ciclev10025879m.g Citrus clementina
CiPaw.03G128200 Carya illinoinensis
CiPaw.05G199200 Carya illinoinensis
ClCG01G000280 Citrullus lanatus
ClCG02G000610 Citrullus lanatus
COL.COLO4_14015 Corchorus olitorius
COL.COLO4_16808 Corchorus olitorius
Cpa.g.sc3.113 Carica papaya
Cpa.g.sc42.115 Carica papaya
CsaV3_2G018160 Cucumis sativus L.
CsaV3_5G000290 Cucumis sativus L.
CSS0015835 Camellia sinensis var. sinensis
CSS0023308 Camellia sinensis var. sinensis
CSS0037563 Camellia sinensis var. sinensis
DCAR_020342 Daucus carota
Dinv11311 Davidia involucrata
Dinv29252 Davidia involucrata
Dinv35355 Davidia involucrata
Duzib068G1258 Durio zibethinus
Duzib147G0942 Durio zibethinus
Duzib205G0596 Durio zibethinus
ECA234G3184 Erigeron canadensis
ECA238G2304 Erigeron canadensis
EL10Ac3g05242 Beta vulgaris
EL10Ac6g15270 Beta vulgaris
Eucgr.A01443 Eucalyptus grandis
Eucgr.H04938 Eucalyptus grandis
FAN19G2964 Fragaria x ananassa
FvH4_1g24041 Fragaria vesca
FvH4_7g32150 Fragaria vesca
Glyma.02G095600 Glycine max
Glyma.04G214600 Glycine max
Glyma.06G151500 Glycine max
Glyma.18G115400 Glycine max
Glyma.18G285900 Glycine max
Gohir.A03G048900 Gossypium hirsutum
Gohir.A11G222700 Gossypium hirsutum
Gohir.D03G115900 Gossypium hirsutum
Gohir.D11G229600 Gossypium hirsutum
Gorai.003G068200 Gossypium raimondii
Gorai.003G122100 Gossypium raimondii
GSVIVG01026529001 Vitis vinifera
GSVIVG01038589001 Vitis vinifera
HanXRQChr04g0100461 Helianthus annuus
HanXRQChr09g0268951 Helianthus annuus
HanXRQChr14g0446681 Helianthus annuus
Haze_00241 Corylus avellana
Haze_00244 Corylus avellana
Haze_25128 Corylus avellana
Hma1.2p1_0707F.1_g207050 Hydrangea macrophylla
Hma1.2p1_2856F.1_g329495 Hydrangea macrophylla
HPP92_007148 Vanilla planifolia
HPP92_009309 Vanilla planifolia
Hund21021 Selenicereus undatus
Lalb_Chr03g0038281 Lupinus albus
Lalb_Chr08g0238491 Lupinus albus
Lalb_Chr08g0238501 Lupinus albus
Lalb_Chr23g0272551 Lupinus albus
Lj1g0002313 Lotus japonicus
Lj1g0016737 Lotus japonicus
Lj3A899T68 Lonicera japonica
Lj4A849G56 Lonicera japonica
Lj6g0011498 Lotus japonicus
Lju4688A0T7 Lonicera japonica
Lsat_1_v5_gn_1_20220 Lactuca sativa
Lsat_1_v5_gn_2_135300 Lactuca sativa
Lsat_1_v5_gn_2_64521 Lactuca sativa
Lsat_1_v5_gn_6_112641 Lactuca sativa
Lsat_1_v5_gn_8_44941 Lactuca sativa
Manes.01G039300 Manihot esculenta
Manes.12G152800 Manihot esculenta
Manes.13G082300 Manihot esculenta
Mapoly0133s0013 Marchantia polymorpha
MBI12_g21747_MAGBIO Magnolia biondii
MBI12_g43642_MAGBIO Magnolia biondii
MBI17_g31490_MAGBIO Magnolia biondii
MD01G1012000 Malus domestica
MD01G1224300 Malus domestica
MD15G1338000 Malus domestica
Medtr1g007670 Medicago truncatula
Medtr1g007690 Medicago truncatula
Medtr1g007700 Medicago truncatula
Medtr3g027780 Medicago truncatula
Medtr3g027790 Medicago truncatula
Medtr3g027795 Medicago truncatula
Medtr3g095830 Medicago truncatula
Medtr3g095840 Medicago truncatula
Medtr8g051470 Medicago truncatula
Medtr8g051510 Medicago truncatula
MELO3C005903.2 Cucumis melo
MELO3C023256.2 Cucumis melo
Migut.F00189 Erythranthe guttata
Migut.H00744 Erythranthe guttata
Migut.L00704 Erythranthe guttata
Migut.L00705 Erythranthe guttata
Migut.L00706 Erythranthe guttata
Migut.L00707 Erythranthe guttata
Migut.L00708 Erythranthe guttata
Migut.L00709 Erythranthe guttata
Migut.L00710 Erythranthe guttata
Migut.L00711 Erythranthe guttata
Migut.L00712 Erythranthe guttata
Migut.L00713 Erythranthe guttata
Migut.L00715 Erythranthe guttata
Migut.L00716 Erythranthe guttata
Migut.L00717 Erythranthe guttata
MSTRG.2668 Avicennia marina
MSTRG.8636 Avicennia marina
Nitab4.5_0000015g0250 Nicotiana tabacum
Nitab4.5_0002121g0020 Nicotiana tabacum
Nitab4.5_0002780g0070 Nicotiana tabacum
Nitab4.5_0004813g0030 Nicotiana tabacum
Nitab4.5_0005326g0040 Nicotiana tabacum
Nn3g18920 Nelumbo nucifera
Nn5g28665 Nelumbo nucifera
Oeu023667.1 Olea europaea
Oeu037796.1 Olea europaea
Oeu041073.1 Olea europaea
Oeu047677.1 Olea europaea
Os01g0965500 Oryza sativa ssp. japonica
Os02g0122700 Oryza sativa ssp. japonica
Peaxi162Scf00012g01926 Petunia axillaris
Peaxi162Scf00618g00224 Petunia axillaris
Peaxi162Scf00740g00247 Petunia axillaris
PGR042G1881 Punica granatum
PGR102G2508 Punica granatum
PGSC0003DMG400018520 Solanum tuberosum
PGSC0003DMG400028656 Solanum tuberosum
Phvul.008G015700 Phaseolus vulgaris
Phvul.009G148600 Phaseolus vulgaris
Potri.005G058000 Populus trichocarpa
Potri.007G109900 Populus trichocarpa
Potri.012G018300 Populus trichocarpa
Potri.015G009632 Populus trichocarpa
Pp3c24_14110 Physcomitrium patens
Pp3c8_18530 Physcomitrium patens
Pp3c8_18540 Physcomitrium patens
PRCOL_00000680 Prasinoderma coloniale
Prupe.2G314600 Prunus persica
Psat5g061040 Pisum sativum
Psat6g036000 Pisum sativum
PSO063G1257 Papaver somniferum
PSO170G0223 Papaver somniferum
QL06p029526 Quercus lobata
QL09p007788 Quercus lobata
RcHm_v2.0_Chr1g0381761 Rosa chinensis
RcHm_v2.0_Chr2g0120191 Rosa chinensis
RcHm_v2.0_Chr4g0408921 Rosa chinensis
Rhsim03G0211400 Rhododendron simsii
Rhsim10G0137200 Rhododendron simsii
Sabra05G0050000 Salix brachista
Sabra07G0089900 Salix brachista
Sabra12G0014200 Salix brachista
Sabra15G0007600 Salix brachista
Sc07g0001680 Simmondsia chinensis
Sc19g0000770 Simmondsia chinensis
Sed0008135 Sechium edule
Sed0014882 Sechium edule
Sed0025110 Sechium edule
SEGI_03136 Sequoiadendron giganteum
SEGI_04013 Sequoiadendron giganteum
SEGI_05064 Sequoiadendron giganteum
SEGI_34996 Sequoiadendron giganteum
SGA_v2.0_scaffold192G40518 Striga asiatica
SHI11444 Sapria himalayana
SMO119G0002 Selaginella moellendorffii
Solyc03g082860.3 Solanum lycopersicum
Solyc11g005730.3 Solanum lycopersicum
Sopen03g022670 Solanum pennellii
Sopen11g001690 Solanum pennellii
Sp2g22990 Schrenkiella parvula
Sp6g33610 Schrenkiella parvula
TAR374G1451 Trochodendron aralioides
TAR375G0494 Trochodendron aralioides
TAR381G0984 Trochodendron aralioides
THA.LOC104803335 Tarenaya hassleriana
THA.LOC104819316 Tarenaya hassleriana
Thecc.01G126800 Theobroma cacao
Thecc.03G202700 Theobroma cacao
Thhalv10004504m.g Eutrema salsugineum
Thhalv10013971m.g Eutrema salsugineum
Thhalv10014318m.g Eutrema salsugineum
TPR.G10025 Trifolium pratense
TPR.G10598 Trifolium pratense
TPR.G24489 Trifolium pratense
TPR.G27226 Trifolium pratense
TPR.G34640 Trifolium pratense
TWI31G1475 Tripterygium wilfordii
TWI39G0734 Tripterygium wilfordii
TWI79G0806 Tripterygium wilfordii
unitig_62.g23849 Utricularia gibba
unitig_62.g23850 Utricularia gibba
vmacro06401 Vaccinium macrocarpon
vmacro12858 Vaccinium macrocarpon
VMungo1309G0076 Vigna mungo
VMungo1383G1411 Vigna mungo
Zm00001eb230520 Zea mays
Zm00001eb362400 Zea mays

User provided reference genes

Program Settings