Gene: Sopen11g001690
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen11g001690
- Transcript Identifier Sopen11g001690.2
- Gene Type Coding gene
- Location Spenn-ch11 : 617954-621963 : positive
Gene Family Information
- ID HOM05D002415
- #Genes/#Species 281/97
- Phylogenetic origin
- ID ORTHO05D002522
- #Genes/#Species 282/97
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen11g001690.2
Descriptions
- Description Encodes a SET-domain protein, a H3K27 monomethyltransferases required for chromatin structure and gene silencing. Regulates heterochromatic DNA replication. Contains a PCNA-binding domain. ATXR5 accumulates preferentially during the late G1 or S phase, suggesting that it plays a role in cell-cycle regulation or progression. A plant line expressing an RNAi construct directed against this gene has reduced agrobacterium-mediated tumor formation. | ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (ATXR5) | CONTAINS InterPro DOMAIN/s: SET domain , Zinc finger, PHD-type, conserved site , Zinc finger, PHD-type , Zinc finger, FYVE/PHD-type , Zinc finger, PHD-finger | BEST Arabidopsis thaliana protein match is: ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009294 | ISO | PLAZA Integrative Orthology | DNA mediated transformation | AT5G09790 |
| GO:0009555 | ISO | PLAZA Integrative Orthology | pollen development | AT5G09790 |
| GO:0006275 | ISO | PLAZA Integrative Orthology | regulation of DNA replication | AT5G09790 |
| GO:0051726 | ISO | PLAZA Integrative Orthology | regulation of cell cycle | AT5G09790 |
| GO:0070734 | ISO | PLAZA Integrative Orthology | histone H3-K27 methylation | AT5G09790 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0046976 | ISO | PLAZA Integrative Orthology | histone methyltransferase activity (H3-K27 specific) | AT5G09790 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G09790 |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT5G09790 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 12.3.3.5 | Chromatin organisation.post-translational histone modification.histone lysine methylation.class-IV histone methyltransferase (ATXR) |